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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Cancer3D Resource Report Resource Website 1+ mentions |
Cancer3D (RRID:SCR_013755) | data or information resource, database | Database that allows for the exploration of cancer on somatic missense mutations from the Cancer Genome Atlas and Cancer Cell Line Encyclopedia. The site maps proteins and mutations using 3D models and is an interface to the algorithms e-Driver and e-Drug allowing for the prediction of novel cancer drivers or drug biomarkers. | database, cancer, somatic missense mutations, e-Driver, e-Drug | is related to: The Cancer Genome Atlas | cancer | HFSP RGP0027/2011; NGMS GM101457 |
PMID:25392415 | free, public | SCR_013755 | SciCrunch Registry | 2026-10-24 12:51:08 | 7 | |||||||
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Jackson Laboratory Clinical Knowledgebase Resource Report Resource Website 10+ mentions |
Jackson Laboratory Clinical Knowledgebase (RRID:SCR_014965) | CKB | data or information resource, database | Semi-automated and manually curated database of gene/variant annotations, therapy knowledge, diagnostic/prognostic information, and oncology clinical trials. Users can search CKB via gene, gene variants, drug, drug class, indication, and clinical trials. | cancer, database, knowledgebase, clinical trial, clinical, gene, gene annotation, variant annotation, therapy, diagnosis | Cancer | PMID:26772741 | Available to the research community, For educational and research purposes only, Not intended to be used for medical advice/diagnosis or treatment | SCR_014965 | SciCrunch Registry | Jackson CKB | 2026-10-24 12:51:10 | 31 | |||||||
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Mouse Tumor Biology Database Resource Report Resource Website 1+ mentions |
Mouse Tumor Biology Database (RRID:SCR_006517) | MTB | data or information resource, database | Database supports use of mouse model system for human cancer by providing comprehensive resource for data and information on various tumor models. | endogenous, knock out mouse, hybrid, inbred mouse strain, induced, mouse, mutant, pathology, tumor, gene, organ, strain, genetics, pathology, image, gene expression |
is related to: Mouse Genome Informatics (MGI) has parent organization: Jackson Laboratory |
Cancer, Tumor, Hereditary cancer | NCI CA089713 | PMID:18432250 PMID:21282667 |
The community can contribute to this resource, Acknowledgement requested, For research and educational purposes, Non-commercial, Without the prior express written permission | nif-0000-03163, SCR_017516 | http://tumor.informatics.jax.org/mtbwi/index.do | SCR_006517 | SciCrunch Registry | MGI: MTB Database, Mouse Tumor Biology (MTB) Database, MTB Database, MTB: Mouse Tumor Biology Database | 2026-10-24 12:50:39 | 9 | |||
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HIstome: The Histone Infobase Resource Report Resource Website 1+ mentions |
HIstome: The Histone Infobase (RRID:SCR_006972) | HIstome | data or information resource, database | Database of human histone variants, sites of their post-translational modifications and various histone modifying enzymes. The database covers 5 types of histones, 8 types of their post-translational modifications and 13 classes of modifying enzymes. Many data fields are hyperlinked to other databases (e.g. UnprotKB/Swiss-Prot, HGNC, OMIM, Unigene etc.). Additionally, this database also provides sequences of promoter regions (-700 TSS +300) for all gene entries. These sequences were extracted from the UCSC genome browser. Sites of post-translational modifications of histones were manually searched from PubMed listed literature. Current version contains information for about ~50 histone proteins and ~150 histone modifying enzymes. HIstome is a combined effort of researchers from two institutions, Advanced Center for Treatment, Research and Education in Cancer (ACTREC), Navi Mumbai and Center of Excellence in Epigenetics (CoEE), Indian Institute of Science Education and Research (IISER), Pune. | histone, protein, enzyme, modifying enzyme, post-translational modification, variant, promoter region, gene, epigenetic regulation, india, bio.tools |
is listed by: re3data.org is listed by: Debian is listed by: bio.tools has parent organization: ACTREC - Advanced Centre for Treatment Research and Education in Cancer |
Cancer | ACTREuropean Union - Advanced Centre for Treatment Research and Education in Cancer ; Government of India |
PMID:22140112 | Free, Public, Acknowledgement requested | biotools:histome, r3d100010977, nlx_151419 | http://www.actrec.gov.in/histome/, https://bio.tools/histome, https://doi.org/10.17616/R3RD0R | http://www.histome.net/ | SCR_006972 | SciCrunch Registry | 2026-10-24 12:50:41 | 1 | |||
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NCI Breast and Colon Cancer Family Registries Resource Report Resource Website 1+ mentions |
NCI Breast and Colon Cancer Family Registries (RRID:SCR_006664) | Breast and Colon CFR | biomaterial supply resource, material resource, tissue bank | The Breast Cancer Family Registry (Breast CFR) and the Colon Cancer Family Registry (Colon CFR) were established by the National Cancer Institute (NCI) as a unique resource for investigators to use in conducting studies on the genetics and molecular epidemiology of breast and colon cancer. Known collectively as the CFRs, they share a central goal: the translation of research to the clinical and prevention settings for the benefit of Registry participants and the general public. The CFRs are particularly interested in: * Identifying and characterizing cancer susceptibility genes; * Defining gene-gene and gene-environment interactions in cancer etiology; and * Exploring the translational, preventive, and behavioral implications of research findings. The CFRs do not provide funding for studies; however, researchers can apply to access CFR data and biospecimens contributed by thousands of families from across the spectrum of risk for these cancers and from population-based or relative controls. Special features of the CFRs include: * Population-based and clinic-based ascertainment; * Systematic collection of validated family history; * Epidemiologic risk factor , clinical, and followup data; * Biospecimens (including tumor blocks and Epstein-Barr virus (EBV)-transformed cell lines); * Ongoing molecular characterization of the participating families; and * A combined informatics center. | breast, colon, breast cancer, colon cancer, biospecimen, tumor block, epstein-barr virus-transformed cell line, cell line, cancer, tumor |
is listed by: One Mind Biospecimen Bank Listing has parent organization: National Cancer Institute |
Breast cancer, Colon cancer, Cancer, Tumor | NCI | Public: Researchers can apply to access CFR data and biospecimens contributed by thousands of families from across the spectrum of risk for these cancers and from population-based or relative controls. | nlx_143711 | SCR_006664 | SciCrunch Registry | 2026-10-24 12:50:40 | 3 | ||||||
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ChimerDB Resource Report Resource Website 10+ mentions |
ChimerDB (RRID:SCR_007596) | data or information resource, database | Knowledgebase of fusion transcripts collected from various public resources such as the Sanger CGP, OMIM, PubMed, and Mitelman's database. It is an alignment viewer to facilitate examining reliability of fusion transcripts and inferring functional significance., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | knowledge base, fusion transcript, transcript alignment, alignment viewer | has parent organization: Ewha Womans University; Seoul; South Korea | Tumor, Cancer | Korean Ministry of Education Science and Technology ; Gwangju Institute of Science and Technology ; Korean Ministry of Science and Technology R01-2008-000-20818-0; Korean Ministry of Science and Technology 2007-03983; National Core Research Center R15-2006-020; Korean Rural Development Administration 20070401034010 |
PMID:19906715 PMID:16381848 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02659 | http://genome.ewha.ac.kr/ChimerDB/ | SCR_007596 | SciCrunch Registry | 2026-10-24 12:50:44 | 29 | |||||
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CTDatabase Resource Report Resource Website 100+ mentions |
CTDatabase (RRID:SCR_007614) | data or information resource, database | A database of information about each Cancer-Testis (CT) gene, its gene products and the immune response induced in cancer patients by these proteins. CT antigens are proteins normally expressed only in the human germ line but that are also present in a significant subset of malignant tumors. The practical importance of these proteins is that due to their restricted expression pattern they are frequently recognized by the immune system of cancer patients. Moreover, this antigenicity has raised the possibility of their being used as vaccines to actively stimulate immune responses in order to combat tumor growth. As a result worldwide research into many aspects of CT antigens is rapidly growing prompting the construction of this database as a resource for investigators involved in this area. | data set, FASEB list | is listed by: 3DVC | Cancer | nif-0000-02704 | SCR_007614 | SciCrunch Registry | CTDatabase | 2026-10-24 12:50:45 | 109 | ||||||||
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DriverDB Resource Report Resource Website 10+ mentions |
DriverDB (RRID:SCR_007736) | DriverDB | data or information resource, database | A database for cancer driver gene/mutation that incorporates a huge amount of exome-seq data, annotation databases (such as dbSNP, 1000 Genome and Cosmic), and published bioinformatics algorithms dedicated to driver gene/mutation identification. | gene, mutation |
is listed by: OMICtools has parent organization: National Yang-Ming University; Taipei; Taiwan |
Cancer | PMID:24214964 | OMICS_00268 | SCR_007736 | SciCrunch Registry | DriverDB: A database for cancer driver gene/mutation | 2026-10-24 12:50:47 | 25 | ||||||
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CanPredict Resource Report Resource Website 1+ mentions |
CanPredict (RRID:SCR_008216) | CanPredict | analysis service resource, data analysis service, production service resource, service resource | Web application that uses a combination of computational methods to identify those changes most likely to be cancer-associated. |
is listed by: OMICtools has parent organization: University of California at San Francisco; California; USA |
Cancer | OMICS_00142 | SCR_008216 | SciCrunch Registry | CanPredict: A computational tool for predicting Cancer-associated mutations | 2026-10-24 12:50:54 | 3 | ||||||||
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Richard M. Lucas Center for Imaging Resource Report Resource Website 1+ mentions |
Richard M. Lucas Center for Imaging (RRID:SCR_001406) | Lucas Center, CAMRT | biomedical technology research center, training resource | Biomedical technology research center that develops innovative technologies in five core research areas of magnetic resonance imaging and spectroscopy (MRI/MRS): # image reconstruction, fast imaging and radiofrequency (RF) pulse design methods, # R hardware development, # body imaging methods, # neuroimaging methods. # MR spectroscopy methods. In each of these areas, they capitalize on the long-standing, successful partnership and extensive experience in Stanford's Radiology and Electrical Engineering departments to improve and expand imaging technology for use in basic research and clinical care, and to provide cutting edge opportunities to the extramural community for biomedical research with MRI. Over its more than 18 years of existence, CAMRT has been motivated by and has served a wide base of extramurally sponsored collaborators and service users from leading medical and research institutions. Examples of collaborative projects are the development of real-time functional MRI biofeedback methods for neuroscience and clinical applications such as pain remediation, development of methods to mitigate metal artifacts in musculoskeletal imaging, development of novel RF pulses for many applications, and studies of breast cancer with efficient MRS methods. | magnetic resonance imaging, spectroscopy, x-ray imaging, ct imaging, imaging, neuroimaging | has parent organization: Stanford University School of Medicine; California; USA | Brain disorder, Cancer, Stroke, Heart disease | NIBIB | Free, Freely Available | nlx_152629 | http://med.stanford.edu/rsl/about/lucas.html | SCR_001406 | SciCrunch Registry | Lucas Center for Imaging, Center for Advanced Magnetic Resonance Technology | 2026-10-24 12:52:03 | 1 | ||||
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Southwestern NMR Center for In Vivo Metabolism Resource Report Resource Website 1+ mentions |
Southwestern NMR Center for In Vivo Metabolism (RRID:SCR_001429) | Southwestern NMR Center | biomedical technology research center, training resource | Biomedical technology research center that develops and applies new methods for analysis of metabolic networks in intact tissues, animals and human patients. The importance of understanding abnormal metabolism in common diseases such as cancer, diabetes and heart disease has long been appreciated. Because of constraints in technology, however, much of this research has been conducted in isolated systems where clinical relevance may be uncertain. Progress in magnetic resonance technology provides a foundation for major advances towards new ways of imaging metabolism in patients. These new techniques offer the advantage of imaging biochemical pathways without radiation. The focus of this Resource is to bring these technologies to a level where clinical research is feasible through the development of new MR contrast agents, NMR spectroscopy at high fields, and imaging of hyperpolarized 13C. | metabolic network, tissue, imaging, metabolism, nuclear magnetic resonance, magnetic resonance, nuclear magnetic resonance spectroscopy | has parent organization: University of Texas Southwestern Medical Center; Texas; USA | Cancer, Diabetes, Heart disease | NIBIB 5P41EB015908-28 | Free, Freely Available | nlx_152653 | SCR_001429 | SciCrunch Registry | Southwestern NMR Center for in vivo Metabolism - NIBIB | 2026-10-24 12:52:03 | 1 | |||||
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Biomedical Simulations Resource Resource Report Resource Website 1+ mentions |
Biomedical Simulations Resource (RRID:SCR_001952) | BMSR | biomedical technology resource center, training resource | Biomedical technology resource center dedicated to the advancement of the state-of-the-art in biomedical modeling and simulation through Core and Collaborative Research projects, as well as the dissemination of this knowledge and related software through Service, Training and Dissemination activities aimed at the biomedical community at large. The BMSR includes four core research projects: * Pharmacokinetic/Pharmacodynamic Systems Analysis * Nonlinear Modeling of Complex Biomedical Systems * Modeling of Autonomic, Metabolic and Vascular Control Interactions * Nonlinear Modeling of the Hippocampus Fifteen Collaborative Research Projects serve as challenging test grounds for the Resource's methodologies and expertise. | hippocampus, modeling, simulation, model, pharmacokinetic, pharmacodynamic, systems analysis, nonlinear modeling, complex biomedical system, autonomic, metabolic, vascular control, interaction, intracellular signalling, biomarker |
has parent organization: University of Southern California; Los Angeles; USA is parent organization of: BMSR Workshops is parent organization of: BMSR Short Courses is parent organization of: LYSIS is parent organization of: PNEUMA is parent organization of: TARGETgene is parent organization of: EONS is parent organization of: ADAPT |
Cancer, Alzheimer's disease, Metabolic syndrome | NIBIB P41-EB001978 | nif-0000-10530 | http://bmsr.usc.edu/index.html | SCR_001952 | SciCrunch Registry | Biomedical Simulations Resource (BMSR) | 2026-10-24 12:52:04 | 8 | |||||
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GSE27831 Resource Report Resource Website 10+ mentions |
GSE27831 (RRID:SCR_003646) | data or information resource, data set | Curated data set from gene expression profiles of 29 unique samples from uveal melanoma patients that were measured on Affymetrix microarray. In addition, expression of syntenin-1 was measured by RT-PCR and this data is also available in the study. | syntenin-1, gene expression profile, gene expression, eye, adult human |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Cancer, Uveal melanoma | Free, Public | nlx_157798 | SCR_003646 | SciCrunch Registry | 2026-10-24 12:52:06 | 13 | ||||||||
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GSE20194 Resource Report Resource Website 50+ mentions |
GSE20194 (RRID:SCR_003645) | GSE20194 | data or information resource, data set | Curated data set of gene expression data from 230 stage I-III breast cancers that were generated from fine needle aspiration specimens of newly diagnosed breast cancers before any therapy. The biopsy specimens were collected sequentially during a prospective pharmacogenomic marker discovery study between 2000 and 2008. These specimens represent 70-90% pure neoplastic cells with minimal stromal contamination. In the study, patients received 6 months of preoperative (neoadjuvant) chemotherapy including paclitaxel, 5-fluorouracil, cyclophosphamide and doxorubicin followed by surgical resection of the cancer. | gene expression, chemotherapy, paclitaxel, 5-fluorouracil, cyclophosphamide, doxorubicin, adult human |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Cancer, Breast cancer | Free, Public | nlx_157797 | SCR_003645 | SciCrunch Registry | 2026-10-24 12:52:06 | 70 | |||||||
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GSE4698 Resource Report Resource Website 1+ mentions |
GSE4698 (RRID:SCR_003644) | GSE4698 | data or information resource, data set | Curated data set where gene expression profiling was performed on 60 prospectively collected samples of children with first relapse of acute lymphoblastic leukemia enrolled on the relapse trial ALL-REZ BFM 2002 of the Berlin-Frankfurt-Muenster study group. | young human, gene expression, relapse, male, female, gene expression profile, child |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Cancer, Acute lymphoblastic leukemia | Free, Public | nlx_157795 | SCR_003644 | SciCrunch Registry | 2026-10-24 12:52:07 | 4 | |||||||
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GSE4271 Resource Report Resource Website 50+ mentions |
GSE4271 (RRID:SCR_003643) | GSE4271 | data or information resource, data set | Curated data set from a study that investigated 77 primary high-grade astrocytomas and 23 matched recurrences so that changes in gene expression related to both survival and disease progression can be identified. Samples in the study include WHO grade III and IV astrocytomas with a wide range of survival times. | adult human, brain, gene expression |
is related to: Gene Expression Omnibus has parent organization: RanchoBiosciences |
Cancer, Astrocytoma | Free, Public | nlx_157794 | SCR_003643 | SciCrunch Registry | 2026-10-24 12:52:06 | 62 | |||||||
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Circulating Cell-free Genome Atlas project Resource Report Resource Website |
Circulating Cell-free Genome Atlas project (RRID:SCR_023878) | CCGA | data or information resource, portal, project portal, software resource, source code | Prospective, observational, longitudinal, study designed to characterize landscape of genomic cancer signals in blood of people with and without cancer. Sudy includes people in the USA and Canada who had cancer at the time of enrollment, newly diagnosed, and not yet received treatment, and people who did not have known cancer diagnosis. | genomic cancer signals, blood, genomic cancer, cancer | cancer | PMID:36400018 | Free, Freely available | https://github.com/grailbio-publications/Jamshidi_CCGA1LOD_2022 | SCR_023878 | SciCrunch Registry | Circulating Cell-free Genome Atlas (CCGA) | 2026-10-24 12:49:36 | 0 | ||||||
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National Cancer Institute Cancer Statistics Cancer Stat Facts Resource Report Resource Website 1+ mentions |
National Cancer Institute Cancer Statistics Cancer Stat Facts (RRID:SCR_024437) | data or information resource | Collection of statistical summaries for number of common cancer types. They were developed to provide quick overview of frequently requested cancer statistics. Available statistics may include incidence, mortality, survival, stage, prevalence, and lifetime risk. Links to additional resources from NCI including risk factors, treatment, and clinical trials are also provided. The statistics will be updated annually to coincide with the SEER data release. | NCI, statistical summaries collection, cancer statistics, incidence, mortality, survival, stage, prevalence, lifetime risk, risk factors, treatment, clinical trials links, | cancer | Free, Available for download, Freely available | SCR_024437 | SciCrunch Registry | 2026-10-24 12:49:41 | 8 | ||||||||||
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NCI Site Recode ICD-O-3/WHO 2008 Definition Resource Report Resource Website 1+ mentions |
NCI Site Recode ICD-O-3/WHO 2008 Definition (RRID:SCR_024687) | data or information resource, disease-related portal, portal, topical portal | Website describing International Classification of Diseases-Oncology codes that corresponds to different cancer sites in the Surveillance, Epidemiology, and End Results (SEER) registry. | NIH, International Classification of Diseases-Oncology codes, different cancer sites, Surveillance, Epidemiology, and End Results registry, SEER registry, | cancer | NCI | Free, Freely available | SCR_024687 | SciCrunch Registry | , National Cancer Institute Site Recode ICD-O-3/WHO 2008 Definition | 2026-10-24 12:49:45 | 5 | ||||||||
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MEDINA Foundation Resource Report Resource Website 1+ mentions |
MEDINA Foundation (RRID:SCR_004079) | MEDINA | data or information resource, organization portal, portal, service resource | A non-profit research center established through a public-private alliance between the Regional government of Andalusia, the pharmaceutical company Merck Sharp & Dohme Spain S.A. (MSD), and the University of Granada, that is focused on: # Discovery of new compounds and therapies as new leads for drug development # Contract Research Services: High throughput screening services for lead discovery, ADME/TOX, bioanalysis and metabolomics MEDINA offers 1) natural products screening services for lead discovery on therapeutic targets developed by the customers and 2) compound profiling services for their drug candidates, using a counterscreening panel designed to determine potential risks in cardiovascular safety and drug-drug interactions. | high throughput screening, bioanalysis, metabolomics, medicine, drug candidate, drug, drug discovery, natural product, oncology, neurodegeneration |
is related to: European Gram Negative AntiBacterial Engine has parent organization: Merck has parent organization: University of Granada; Granada; Spain |
Infectious disease, Parasitic disease, Cancer | nlx_158529 | SCR_004079 | SciCrunch Registry | Fundaci��n MEDINA (Centro de Excelencia en Investigaci��n de Medicamentos Innovadores en Andalucia), Fundacion MEDINA, Fundaci��n Centro de Excelencia en Investigaci��n de Medicamentos Innovadores en Andaluc��a Medina, Fundaci��n MEDINA | 2026-10-24 12:49:50 | 6 |
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