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URL: https://deeptools.readthedocs.io/en/develop/
Proper Citation: Deeptools (RRID:SCR_016366)
Description: Python based tools to process, visualize and analyse high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq. Implemented within Galaxy framework. Used to perform complete bioinformatic workflows ranging from quality controls and normalizations of aligned reads to integrative analyses, including clustering and visualization approaches.
Resource Type: data analysis software, data processing software, data visualization software, software application, software resource, software toolkit
Defining Citation: PMID:27079975
Keywords: process, visualize, analysis, sequencing, data, ChIP-seq, RNA-seq, MNase-seq, quality, control, normalization, aligned, read, clustering, bioinformatic
Funding: German Epigenome Programme DEEP 01KU1216G; German Research Foundation SFB 992
Availability: Free, Available for download, Freely available
Resource Name: Deeptools
Resource ID: SCR_016366
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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