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 PMID:37934770  

Dominant negative variants in KIF5B cause osteogenesis imperfecta via down regulation of mTOR signaling.

Ronit Marom | Bo Zhang | Megan E Washington | I-Wen Song | Lindsay C Burrage | Vittoria C Rossi | Ava S Berrier | Anika Lindsey | Jacob Lesinski | Michael L Nonet | Jian Chen | Dustin Baldridge | Gary A Silverman | V Reid Sutton | Jill A Rosenfeld | Alyssa A Tran | M John Hicks | David R Murdock | Hongzheng Dai | MaryAnn Weis | Shalini N Jhangiani | Donna M Muzny | Richard A Gibbs | Richard Caswell | Carrie Pottinger | Deirdre Cilliers | Karen Stals | Undiagnosed Diseases Network | David Eyre | Deborah Krakow | Tim Schedl | Stephen C Pak | Brendan H Lee
PLoS genetics | 2023

Kinesin motor proteins transport intracellular cargo, including mRNA, proteins, and organelles. Pathogenic variants in kinesin-related genes have been implicated in neurodevelopmental disorders and skeletal dysplasias. We identified de novo, heterozygous variants in KIF5B, encoding a kinesin-1 subunit, in four individuals with osteogenesis imperfecta. The variants cluster within the highly conserved kinesin motor domain and are predicted to interfere with nucleotide binding, although the mechanistic consequences on cell signaling and function are unknown.

Pubmed ID: 37934770

Antibodies used in this publication

None found

Associated grants

  • Agency: NIGMS NIH HHS, United States
    Id: R01 GM100756
  • Agency: NINDS NIH HHS, United States
    Id: U54 NS108251
  • Agency: NHGRI NIH HHS, United States
    Id: U01 HG007709
  • Agency: NIDDK NIH HHS, United States
    Id: P30 DK056338
  • Agency: NIH HHS, United States
    Id: S10 OD030414
  • Agency: NHGRI NIH HHS, United States
    Id: U01 HG007703
  • Agency: NHGRI NIH HHS, United States
    Id: U01 HG007942
  • Agency: NICHD NIH HHS, United States
    Id: P50 HD103555
  • Agency: NIGMS NIH HHS, United States
    Id: T32 GM007526
  • Agency: NIH HHS, United States
    Id: P40 OD010440
  • Agency: NIEHS NIH HHS, United States
    Id: P30 ES030285
  • Agency: NCI NIH HHS, United States
    Id: P30 CA125123

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This is a list of tools and resources that we have found mentioned in this publication.


Addgene (tool)

RRID:SCR_002037

Non-profit plasmid repository dedicated to helping scientists around the world share high-quality plasmids. Facilitates archiving and distributing DNA-based research reagents and associated data to scientists worldwide. Repository contains over 65,000 plasmids, including special collections on CRISPR, fluorescent proteins, and ready-to-use viral preparations. There is no cost for scientists to deposit plasmids, which saves time and money associated with shipping plasmids themselves. All plasmids are fully sequenced for validation and sequencing data is openly available. We handle the appropriate Material Transfer Agreements (MTA) with institutions, facilitating open exchange and offering intellectual property and liability protection for depositing scientists. Furthermore, we curate free educational resources for the scientific community including a blog, eBooks, video protocols, and detailed molecular biology resources.

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STAR (tool)

RRID:SCR_004463

Software performing alignment of high-throughput RNA-seq data. Aligns RNA-seq reads to reference genome using uncompressed suffix arrays.

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FoldX (tool)

RRID:SCR_008522

A computer algorithm that provides a fast and quantitative estimation of the importance of the interactions contributing to the stability of proteins and protein complexes. The predictive power of FOLDEF has been tested on a very large set of point mutants (1088 mutants) spanning most of the structural environments found in proteins . FoldX uses a full atomic description of the structure of the proteins. The different energy terms taken into account in FoldX have been weighted using empirical data obtained from protein engineering experiments.

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Millipore (tool)

RRID:SCR_008983

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Abcam (tool)

RRID:SCR_012931

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Genome Aggregation Database (tool)

RRID:SCR_014964

Database that aggregates exome and genome sequencing data from large-scale sequencing projects. The gnomAD data set contains individuals sequenced using multiple exome capture methods and sequencing chemistries. Raw data from the projects have been reprocessed through the same pipeline, and jointly variant-called to increase consistency across projects.

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ThermoFisher Scientific EVOS M5000 Imaging System (tool)

RRID:SCR_023650

Microsoft system includes integrated digital inverted benchtop microscope for four-color fluorescence, transmitted-light, and color imaging. Provides interchangeable optics with autofocus, single-click multi-channel image acquisition.3.2 Megapixels, monochrome, CMOS camera. Offers software for acquisition, analysis, and automated cell counting.

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Caenorhabditis Genetics Center (tool)

RRID:SCR_007341

Center that acquires, maintains, and distributes genetic stocks and information about stocks of the small free-living nematode Caenorhabditis elegans for use by investigators initiating or continuing research on this genetic model organism. A searchable strain database, general information about C. elegans, and links to key Web sites of use to scientists, including WormBase, WormAtlas, and WormBook are available.

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jsIs609 [mec7p::mtGFP + lin-15(+)] lin-15(n765) X GFP-tagged mitochondria expressed in TRNs [2] (organism)

RRID:WB-STRAIN:WBStrain00058565

Caenorhabditis elegans with name jsIs609 [mec7p::mtGFP + lin-15(+)] lin-15(n765) X GFP-tagged mitochondria expressed in TRNs [2] from WB.

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unc-116(udn44)/qC1 [dpy-19(e1259) glp-1(q339)] nIs189 III (organism)

RRID:WB-STRAIN:WBStrain00059083

Caenorhabditis elegans with name unc-116(udn44)/qC1 [dpy-19(e1259) glp-1(q339)] nIs189 III from WB.

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unc-116(gk5722udn86)/qC1 [dpy-19(e1259) glp-1(q339)] nIs189 III. (organism)

RRID:WB-STRAIN:WBStrain00052059

Caenorhabditis elegans with name unc-116(gk5722udn86)/qC1 [dpy-19(e1259) glp-1(q339)] nIs189 III. from WB.

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jsSi1579 jsSi1606 [unc-116(+)] II; unc-116(udn42) III (organism)

RRID:WB-STRAIN:WBStrain00059085

Caenorhabditis elegans with name jsSi1579 jsSi1606 [unc-116(+)] II; unc-116(udn42) III from WB.

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jsSi1579 jsSi1606 [unc-116(+)] II; unc-116(udn45) III (organism)

RRID:WB-STRAIN:WBStrain00059086

Caenorhabditis elegans with name jsSi1579 jsSi1606 [unc-116(+)] II; unc-116(udn45) III from WB.

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OP50 (organism)

RRID:WB-STRAIN:WBStrain00041969

Escherichia coli with name E. coli. from WB.

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ijmSi3 [pJD342/pJD330; ChrI_5mex-5_cls-2reenc::GFP_3tbb-2; cb-unc-119(+)]I; unc-119(ed3) III? ; ltSi1[pOD809/pJE110; Pknl-1::KNL-1reencoded::RFP; cb-unc-119(+)]II; unc-119(ed3) III (organism)

RRID:WB-STRAIN:WBStrain00057996

Caenorhabditis elegans with name ijmSi3 [pJD342/pJD330; ChrI_5mex-5_cls-2reenc::GFP_3tbb-2; cb-unc-119(+)]I; unc-119(ed3) III? ; ltSi1[pOD809/pJE110; Pknl-1::KNL-1reencoded::RFP; cb-unc-119(+)]II; unc-119(ed3) III from WB.

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VC2010 (organism)

RRID:WB-STRAIN:WBStrain00000002

Caenorhabditis elegans with name Caenorhabditis elegans wild isolate. from WB.

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unc-116(udn42)/qC1 [dpy-19(e1259) glp-1(q339)] nIs189 III (organism)

RRID:WB-STRAIN:WBStrain00059084

Caenorhabditis elegans with name unc-116(udn42)/qC1 [dpy-19(e1259) glp-1(q339)] nIs189 III from WB.

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jsSi1579 jsSi1606 [unc-116(+)] II; unc-116(gk5722udn86) III (organism)

RRID:WB-STRAIN:WBStrain00059089

Caenorhabditis elegans with name jsSi1579 jsSi1606 [unc-116(+)] II; unc-116(gk5722udn86) III from WB.

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jsSi1579; wrdSi58 II. (organism)

RRID:WB-STRAIN:WBStrain00051716

Caenorhabditis elegans with name jsSi1579; wrdSi58 II. from WB.

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unc-116(udn45)/qC1 [dpy-19(e1259) glp-1(q339)] nIs189 III. (organism)

RRID:WB-STRAIN:WBStrain00052048

Caenorhabditis elegans with name unc-116(udn45)/qC1 [dpy-19(e1259) glp-1(q339)] nIs189 III. from WB.

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