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 PMID:29859091  

Spatial and temporal distribution of lumpy skin disease outbreaks in Uganda (2002-2016).

Sylvester Ochwo | Kimberly VanderWaal | Anna Munsey | Christian Ndekezi | Robert Mwebe | Anna Rose Ademun Okurut | Noelina Nantima | Frank Norbert Mwiine
BMC veterinary research | 2018

Lumpy skin disease (LSD) is a devastating transboundary viral disease of cattle which causes significant loss in production. Although this disease has been reported in Uganda and throughout East Africa, there is almost no information about its epidemiology, spatial or spatio-temporal distribution. We carried out a retrospective study on the epidemiology of LSD in Uganda between the years 2002 and 2016, using data on reported outbreaks collected monthly by the central government veterinary administration. Descriptive statistics were computed on frequency of outbreaks, number of cases, vaccinations and deaths. We evaluated differences in the number of reported outbreaks across different regions (agro-ecological zones), districts, months and years. Spatial, temporal and space-time scan statistics were used to identify possible epidemiological clusters of LSD outbreaks.

Pubmed ID: 29859091

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RRID:SCR_005071

A generic algorithm for scaffolding next-generation sequencing assemblies.

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