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 PMID:25474150  

RAN-binding protein 9 is involved in alternative splicing and is critical for male germ cell development and male fertility.

Jianqiang Bao | Chong Tang | Jiachen Li | Ying Zhang | Bhupal P Bhetwal | Huili Zheng | Wei Yan
PLoS genetics | 2014

As a member of the large Ran-binding protein family, Ran-binding protein 9 (RANBP9) has been suggested to play a critical role in diverse cellular functions in somatic cell lineages in vitro, and this is further supported by the neonatal lethality phenotype in Ranbp9 global knockout mice. However, the exact molecular actions of RANBP9 remain largely unknown. By inactivation of Ranbp9 specifically in testicular somatic and spermatogenic cells, we discovered that Ranbp9 was dispensable for Sertoli cell development and functions, but critical for male germ cell development and male fertility. RIP-Seq and proteomic analyses revealed that RANBP9 was associated with multiple key splicing factors and directly targeted >2,300 mRNAs in spermatocytes and round spermatids. Many of the RANBP9 target and non-target mRNAs either displayed aberrant splicing patterns or were dysregulated in the absence of Ranbp9. Our data uncovered a novel role of Ranbp9 in regulating alternative splicing in spermatogenic cells, which is critical for normal spermatogenesis and male fertility.

Pubmed ID: 25474150

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Associated grants

  • Agency: NIGMS NIH HHS, United States
    Id: 8P20GM10344011
  • Agency: NICHD NIH HHS, United States
    Id: R21 HD071736
  • Agency: NICHD NIH HHS, United States
    Id: HD060858
  • Agency: NICHD NIH HHS, United States
    Id: R03 HD074573
  • Agency: NICHD NIH HHS, United States
    Id: HD074573
  • Agency: NICHD NIH HHS, United States
    Id: HD071736
  • Agency: NICHD NIH HHS, United States
    Id: R01 HD060858
  • Agency: NCRR NIH HHS, United States
    Id: P20 RR018751
  • Agency: NCRR NIH HHS, United States
    Id: P20-RR18751

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Cufflinks (tool)

RRID:SCR_014597

Software tool for transcriptome assembly and differential expression analysis for RNA-Seq. Includes script called cuffmerge that can be used to merge together several Cufflinks assemblies. It also handles running Cuffcompare as well as automatically filtering a number of transfrags that are likely to be artifacts. If the researcher has a reference GTF file, the researcher can provide it to the script to more effectively merge novel isoforms and maximize overall assembly quality.

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C57BL/6J (tool)

RRID:IMSR_JAX:000664

Mus musculus with name C57BL/6J from IMSR.

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