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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
| Organism Name | Proper Citation | Species | Synonyms |
Notes |
Phenotype | Affected Gene | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
SHRSP.WKY-(D3Mgh16-rs197649383)/Gcrc Resource Report Resource Website |
RRID:RGD_13432203 | Rattus norvegicus | Congenic sub-strains were generated by backcrossing male SHRSP.WKY-(D3Mgh16-D3Rat114)/Gcrc rats to SHRSP females. Progeny generated from this backcross were heterozygous throughout the original congenic interval. Brother X sister mating was carried out to generate sub-strains containing smaller congenic intervals. | 13432203 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 13432203 | 2026-08-15 12:07:13 | 0 | |||||
|
SS.BN-(D13Rat115-D13Got22)/Mcwi Resource Report Resource Website |
RRID:RGD_12798530 | Rattus norvegicus | SS/JrHsdMcwi were crossed with SS.BN-(D13Rat111-D13Got22)/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain | 12798530 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 12798530 | 2026-08-15 12:07:13 | 0 | |||||
|
SS.BN-(D13Hmgc5885-D13Rat32)/Mcwi Resource Report Resource Website |
RRID:RGD_12792951 | Rattus norvegicus | SS/JrHsdMcwi were crossed with SS.BN-(D13Rat151-D13Rat197)/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain | 12792951 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 12792951 | 2026-08-15 12:07:13 | 0 | |||||
|
SS.BN-(D13Mit5-D13Rat32)/Mcwi Resource Report Resource Website |
RRID:RGD_12792950 | Rattus norvegicus | SS/JrHsdMcwi were crossed with SS.BN-(D13Rat151-D13Rat197)/Mcwi, rats from F1 were intercrossed and genotyped to get the congenic strain | 12792950 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 12792950 | 2026-08-15 12:07:13 | 0 | |||||
|
SS.ZUC-Leprfa+/+/Slc Resource Report Resource Website |
RRID:RGD_13432151 | Rattus norvegicus | SS.ZUC-Leprfa/Slc rats were generated as the result of an initial mating of a male Zucker rat (Japan SLC) heterozygous for the fa allele of Lepr with a female DahlS/JrSeac rat (Seac, Japan), followed by multiple rounds of backcrossing of the resulting progeny to the SS strain. | 13432151 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 13432151 | 2026-08-15 12:07:14 | 0 | |||||
|
LE.W-Tg(Slc32a1-YFP*)1Yyan/Vip Resource Report Resource Website 1+ mentions |
RRID:RGD_13464326 | Rattus norvegicus | The original strain, W-Tg(Slc32a1-YFP*)1Yyan (NBRP No.0554 rat), was established at National Institute for Physiological Sciences in 2004, thereafter introduced to Gunma University in 2006 （Uematsu et al. Cerebral Cortex (2008). This original strain rats were was crossed with Long-Evans rat (Iar:Long-Evans) for 10 generations to establish the congenic strain. National BioResource Project for the Rat in Japan | 13464326 | congenic | Rat Genome Database (RGD) | RGD | Cryopreserved Embryo (as of 2018-01-03) | 13464326 | 2026-08-15 12:07:14 | 1 | |||||
|
SS.LEW-(D10M11Mit119-D10Rat27)/Ayd Resource Report Resource Website |
RRID:RGD_12902614 | Rattus norvegicus | A segment of chromosome 10 was transferred from LEW into the SS background. Two congenic strains, designated S.L4 and S.L5, that were previously shown to have trapped 2 BP QTLs, were used to derive congenic substrains. The F2 rats were genotyped for markers that resided in a region of interest. Each rat was then backcrossed to an SS rat to duplicate the fragment. | 12902614 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 12902614 | 2026-08-15 12:07:14 | 0 | |||||
|
ACI.FHH-(rs105487995-rs105373896)/Mcwi Resource Report Resource Website |
RRID:RGD_14975242 | Rattus norvegicus | This congenic line was produced by backcrossing ACI.FHH-[D1Rat74-D1Rat90] (also named Rf-1A, RGD:5143940) congenic rats to ACI rats to initiate the generation of Rf-1 congenic sublines. Offspring that had inherited a desirable recombination within the Rf-1 region were selected. These selected offspring were backcrossed and intercrossed to produce homozygous congenic sublines used for phenotyping. | 14975242 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 14975242 | 2026-08-15 12:07:16 | 0 | |||||
|
ACI.FHH-(rgdv393055223-rs198922144)/Mcwi Resource Report Resource Website |
RRID:RGD_14975245 | Rattus norvegicus | This congenic line was produced by backcrossing ACI.FHH-[D1Rat74-D1Rat90] (also named Rf-1A, RGD:5143940) congenic rats to ACI rats to initiate the generation of Rf-1 congenic sublines. Offspring that had inherited a desirable recombination within the Rf-1 region were selected. These selected offspring were backcrossed and intercrossed to produce homozygous congenic sublines used for phenotyping. | 14975245 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 14975245 | 2026-08-15 12:07:16 | 0 | |||||
|
ACI.FHH-(rs198076037-rs105278863)/Mcwi Resource Report Resource Website |
RRID:RGD_14975248 | Rattus norvegicus | This congenic line was produced by backcrossing ACI.FHH-[D1Rat74-D1Rat90] (also named Rf-1A, RGD:5143940) congenic rats to ACI rats to initiate the generation of Rf-1 congenic sublines. Offspring that had inherited a desirable recombination within the Rf-1 region were selected. These selected offspring were backcrossed and intercrossed to produce homozygous congenic sublines used for phenotyping. | 14975248 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 14975248 | 2026-08-15 12:07:16 | 0 | |||||
|
MWF.SHR-(D6Rat1-D6Mit8)/Rkb Resource Report Resource Website |
RRID:RGD_150429603 | Rattus norvegicus | The congenic MWF.SHR-(D6Rat1-D6Mit8)/Rkb was generated by transfer of different nested SHR/FubRkb segments onto the MWF/FubRkb background. For this procedure, male and female rats of the MWF-6SHR (RGD:1641831) breeding, that were homozygous for all MWF chromosomes except RNO6 and heterozygous for RNO6, were intercrossed. Eight congenics were generated. | 150429603 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 150429603 | 2026-08-15 12:07:15 | 0 | |||||
|
SS.SHR-(D2Rat46- D2Mco48)/Mco Resource Report Resource Website |
RRID:RGD_150517549 | Rattus norvegicus | This SS congenic carries the chromosomal fragment from the spontaneously hypertensive rat (SHR). Recombinant Progeny Testing (RPT) was used to fine-map the proteinuria locus. The congenic was developed from the recombinant families by fixing the transferred genomic interval (D2Rat46- D2Mco48) in the homozygous SHR/SHR state | 150517549 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 150517549 | 2026-08-15 12:07:18 | 0 | |||||
|
SHRSP.SHR-(rs197197017 -rs198445122)/Utx Resource Report Resource Website |
RRID:RGD_150340617 | Rattus norvegicus | A congenic strain made by introducing B2 fragment (a segment of chromosome 1, 154.7 Mb - 203 Mb) from SHR/Utx into SHRSP/BbbUtx.The B2 fragment contains wild-type Stim1 as confirmed by sequencing. | 150340617 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 150340617 | 2026-08-15 12:07:17 | 0 | |||||
|
F344.LEA-Ugl/Okt Resource Report Resource Website |
RRID:RGD_149735558 | Rattus norvegicus | A congenic strain in which the ugl locus of LEA/Tohm rats was introduced into F344/NSlc rats. "This strain is homozygous for the ugl locus, which contains a 13 bp deletion in the Ctns gene.Cystinosis model rat. National BioResource Project for the Rat in Japan | 149735558 | congenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2021-07-22) | 149735558 | 2026-08-15 12:07:17 | 0 | |||||
|
F344-Cacna1agry/Okym Resource Report Resource Website |
RRID:RGD_149735897 | Rattus norvegicus | This strain is derived from GRY/Idr (GRY/Idr has the M251K mutation in the Cacna1a gene) provided from NBRP-Rat. GRY/Idr was backcrossed to F344/NSlc. National BioResource Project for the Rat in Japan | 149735897 | congenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2021-07-29) | 149735897 | 2026-08-15 12:07:18 | 0 | |||||
|
BBDR.BBDP-(D4Mit6-D4Mit24)/RhwMcwi Resource Report Resource Website |
RRID:RGD_41412172 | Rattus norvegicus | The lymphopenia locus from diabetic proned BBDP rat was transferred onto the genome of diabetic-resistant BB rat by marker-assisted selection in nine cycles of cross-intercross breeding. This congenic strain from Ake Lernmark, Laboratory, University of Washington, Seattle, Washington to Medical College of Wisconsin. | 41412172 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 41412172 | 2026-08-15 12:07:18 | 0 | |||||
|
BDIX.BDIV-D6Rat132-D6Rat229/Zte Resource Report Resource Website |
RRID:RGD_32716420 | Rattus norvegicus | The BDIX.BDIV-D6Rat132-D6Rat229/Zte congenic strain was produced by crossing BDIX (tumor-susceptible) and BDIV (tumor resistant) and then selecting for strains carrying homozygous segments of the BDIV chromosome on a BDIX background. | 32716420 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 32716420 | 2026-08-15 12:07:18 | 0 | |||||
|
SHRSP.SHR-(D1Rat23-D1Rat213)(D18Rat73-D18Rat11)/Izm Resource Report Resource Website |
RRID:RGD_38599188 | Rattus norvegicus | A double congenic strain made by introducing a segments of chromosome 1 and 18 from SHR/Izm into SHRSP/Izm. Developed by Dr. Tohru Nabika from Shimane University. National BioResource Project for the Rat in Japan, Department of Functional Pathology, Shimane University Faculty of Medicine, Izumo, Japan. | 38599188 | congenic | Rat Genome Database (RGD) | RGD | Cryopreserved Sperm (as of 2020-09-14) | 38599188 | 2026-08-15 12:07:19 | 0 | |||||
|
DA.W-Ncf1W/Rhd Resource Report Resource Website |
RRID:RGD_41404723 | Rattus norvegicus | The Wistar Ncf1 (Ncf1W) allele was backcrossed to the DA background for 10 generations | 41404723 | congenic | Rat Genome Database (RGD) | RGD | Unknown | 41404723 | 2026-08-15 12:07:20 | 0 | |||||
|
SDT.Cg-Leprfa/JttJcl Resource Report Resource Website |
RRID:RGD_126848740 | Rattus norvegicus | Leprfa allele from ZDF was introgressed into SDT rats using the speed congenic method. The newly establised congenic strain of a SDT rat for Leprfa was maintained by intercross between fa-heterozygous littermates in Japan CLEA Inc. CLEA Japan, Inc | 126848740 | congenic | Rat Genome Database (RGD) | RGD | Live Animals (as of 2021-05-06) | 126848740 | 2026-08-15 12:07:19 | 0 |
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