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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
| Organism Name | Proper Citation | Species | Synonyms |
Notes |
Phenotype | Affected Gene | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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hpIs636; hpEx4479. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055716 | Caenorhabditis elegans | hpIs636; hpEx4479. | hpIs636 [rig-3p::HisCl1::SL2::mCherry]. hpEx4479 [npr-4p::snb-1::pHluorin + lin-15(+)]. Pick animals with green fluorescence in VNC to maintain. Synapse exocytosis marker in AVA. Transgenic animals exhibit punctate green fluorescent signals along AVA neurites in the ventral cord, with stronger expression than in a wild-type background. mCherry and HisCl1 expression in AVA soma and neurites. In the presence of histamine, the SNB-1::pHluorin intensity will decrease in neurites. | WB-STRAIN:WBStrain00055716 | WormBase (WB) | WB | unknown | PMID:38598630 | 2026-08-01 10:24:47 | 0 | |||||
|
pha-1(e2123) III; wpEx505. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055678 | Caenorhabditis elegans | pha-1(e2123) III; wpEx505. | Made_by: Manasa Basavaraju (Hammarlund Lab)|"wpEx505 [ocr-3p::mEGFP + pha-1(+)]. Maintain at 23-25C to select for array. PVP neurons are marked with mEGFP. Can be used to isolate PVP by FACS. Used by CeNGEN project for RNA-Seq (https:" | WBGene00004010(pha-1) | WBGene00004010(pha-1) | WB-STRAIN:WBStrain00055678 | WormBase (WB) | WB | unknown | 2026-08-01 10:24:48 | 0 | ||||
|
hpIs860. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055711 | Caenorhabditis elegans | hpIs860. | hpIs860 [twk-40p(short)::eGFP + myo-2p::wCherry]. Cytosolic GFP expression in AVA, AVE & AVB in the head, with the strongest signal in AVA. Additional fluorescent signal in RVG (SAB) and tail (DVA). | WB-STRAIN:WBStrain00055711 | WormBase (WB) | WB | unknown | PMID:38598630 | 2026-08-01 10:24:49 | 0 | |||||
|
mtx-2(wy50266) III; miro-1(wy50180) IV; oyIs14 V. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055677 | Caenorhabditis elegans | mtx-2(wy50266) III; miro-1(wy50180) IV; oyIs14 V. | oyIs14 [sra-6p::GFP + lin-15(+)]. Disrupted mitochondrial trafficking. Reference: Ding C, et al. Elife. 2022 Mar 14;11:e73557. PMID: 35285800. | WBGene00019544(miro-1)|WBGene00022516(mtx-2) | WBGene00019544(miro-1), WBGene00022516(mtx-2) | WB-STRAIN:WBStrain00055677 | WormBase (WB) | WB | unknown | 2026-08-01 10:24:46 | 0 | ||||
|
hpIs758; hpIs814. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055710 | Caenorhabditis elegans | hpIs758; hpIs814. | hpIs758 [rig-3p::LoxP::eBFP::LoxP::Chrimson::wCherry + twk-40p(short)::Cre + myo-2p::wCherry]. hpIs814 [flp-18p::LoxP::eBFP::Stop::LoxP::TeTx::wCherry + twk-40p(short)::Cre]. RFP positive in AVA soma and neurite along the VNC. Weak pharyngeal RFP. Flat and slow movement without ATR or LED stimulation. Chrimson activation induces loopy reversal but not loopy forward after 5min. | WB-STRAIN:WBStrain00055710 | WormBase (WB) | WB | unknown | PMID:38598630 | 2026-08-01 10:24:47 | 0 | |||||
|
twk-40(hp834) III; hpIs860. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055713 | Caenorhabditis elegans | twk-40(hp834) III; hpIs860. | hpIs860 [twk-40p(short)::eGFP + myo-2p::wCherry]. Loopy movement with increased reversals. Cytosolic GFP expression in AVA, AVE & AVB in the head, with the strongest signal in AVA. Additional fluorescent signal in RVG (SAB) and tail (DVA). | WBGene00006691(twk-40) | WBGene00006691(twk-40) | WB-STRAIN:WBStrain00055713 | WormBase (WB) | WB | unknown | PMID:38598630 | 2026-08-01 10:24:47 | 0 | |||
|
pha-1(e2123) III; wpEx517. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055679 | Caenorhabditis elegans | pha-1(e2123) III; wpEx517. | Made_by: Manasa Basavaraju in the Hammarlund lab|"wpEx517 [srab-20p::Neptune2.5 + pha-1(+)]. Maintain at 25C to select for animals carrying the array. Neptune2.5 expression in PHB neuron can be used to isolate PHB by FACS. Used by CeNGEN project for RNA-Seq (https:" | WBGene00004010(pha-1) | WBGene00004010(pha-1) | WB-STRAIN:WBStrain00055679 | WormBase (WB) | WB | unknown | 2026-08-01 10:24:47 | 0 | ||||
|
twk-40(bln336) III; hpIs860. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055712 | Caenorhabditis elegans | twk-40(bln336) III; hpIs860. | hpIs860 [twk-40p(short)::eGFP + myo-2p::wCherry]. twk-40 gain-of-function allele. Paralyzed, no backward movement upon head touch. Cytosolic GFP expression in AVA, AVE & AVB in the head, with the strongest signal in AVA. Additional fluorescent signal in RVG (SAB) and tail (DVA). | WBGene00006691(twk-40) | WBGene00006691(twk-40) | WB-STRAIN:WBStrain00055712 | WormBase (WB) | WB | unknown | PMID:38598630 | 2026-08-01 10:24:48 | 0 | |||
|
hbs-1(srf730) I. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055663 | Caenorhabditis elegans | hbs-1(srf730) I. | Made_by: Parissa Monem|"srf730 is a 900bp deletion within hbs-1. Reference: Monem PC et al. PLOS Genet. 2023 Jan 10;19(1):e1010577. doi: 10.1371/journal.pgen.1010577. PMID: 36626369" | WBGene00010622(hbs-1) | WBGene00010622(hbs-1) | WB-STRAIN:WBStrain00055663 | WormBase (WB) | WB | unknown | 2026-08-01 10:24:48 | 0 | ||||
|
znf-598(srf2119) II. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055662 | Caenorhabditis elegans | znf-598(srf2119) II. | Made_by: Parissa Monem|"srf2119 is a 965bp deletion within znf-598. Reference: Monem PC et al. PLOS Genet. 2023 Jan 10;19(1):e1010577. doi: 10.1371/journal.pgen.1010577. PMID: 36626369" | WBGene00016888(znf-598) | WBGene00016888(znf-598) | WB-STRAIN:WBStrain00055662 | WormBase (WB) | WB | unknown | 2026-08-01 10:24:46 | 0 | ||||
|
rps-10(srf0825[K125R]) rps-20(srf1046[K6R+K9R]) unc-54(srf1004[unc-54::T2A::FLAG::rareArg12::GFP]) I. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055660 | Caenorhabditis elegans | rps-10(srf0825[K125R]) rps-20(srf1046[K6R+K9R]) unc-54(srf1004[unc-54::T2A::FLAG::rareArg12::GFP]) I. | Made_by: Parissa Monem|"Nuclear body wall muscle GFP+." | WBGene00004479(rps-10)|WBGene00004489(rps-20)|WBGene00006789(unc-54) | WBGene00004479(rps-10), WBGene00004489(rps-20), WBGene00006789(unc-54) | WB-STRAIN:WBStrain00055660 | WormBase (WB) | WB | unknown | 2026-08-01 10:24:48 | 0 | ||||
|
hpIs819; hpIs810. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055704 | Caenorhabditis elegans | hpIs819; hpIs810. | hpIs819 [twk-40p(short)::GCaMP::T2A::NLS::mNeptune + lin-15(+)]. hpIs810 [flp-18p::LoxP::eBFP::Stop::LoxP::TeTx::wCherry + twk-40p(short)::Cre]. Transgenic animals exhibit strong RFP signals in AVA soma and neurites; cytoplasmic GFP and RFP in AVA, AVE, AVB and some neurons in RVG and tail (DVA). | WB-STRAIN:WBStrain00055704 | WormBase (WB) | WB | unknown | PMID:38598630 | 2026-08-01 10:24:47 | 0 | |||||
|
twk-40(hp834) III; hpIs814. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055706 | Caenorhabditis elegans | twk-40(hp834) III; hpIs814. | hpIs814 [flp-18p::LoxP::eBFP::Stop::LoxP::TeTx::wCherry + twk-40p(short)::Cre]. Red fluorescence in AVA. twk-40(hp834) is a loss-of-function allele. twk-40(hp834) itself is highly loopy and a weak backward coiler. The presence of hpIs814 in the background reduces body bending and speed compared to twk-40(hp834) alone. | WBGene00006691(twk-40) | WBGene00006691(twk-40) | WB-STRAIN:WBStrain00055706 | WormBase (WB) | WB | unknown | PMID:38598630 | 2026-08-01 10:24:48 | 0 | |||
|
viro-2(vir10) III; rde-1(ne219) V; jyIs8. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055666 | Caenorhabditis elegans | viro-2(vir10) III; rde-1(ne219) V; jyIs8. | jyIs8 [pals-5p::GFP + myo-2p::mCherry]. Orsay virus infection defect. Reference: Jiang H, et al. mBio. 2017 Sep 5;8(5):e00940-17. doi: 10.1128/mBio.00940-17. PMID: 28874467. | WBGene00004323(rde-1)|WBGene00015107(viro-2) | WBGene00004323(rde-1), WBGene00015107(viro-2) | WB-STRAIN:WBStrain00055666 | WormBase (WB) | WB | unknown | 2026-08-01 10:24:48 | 0 | ||||
|
ljIs131; hpEx4340. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055702 | Caenorhabditis elegans | ljIs131; hpEx4340. | ljIs131 [myo-3p::GCaMP3::UrSL2::tagRFP-T]. hpEx4340 [nmr-1p::TeTx::wCherry + sra-11p::TeTx::wCherry + HygromycinR]. Animals carrying the array show additional red fluorescence in the head compared to those that have lost the array. Transgenic animals are severely Unc. RFP positive head neuron soma can be observed under V16 in older animals. Hygromycin can be used to select for hpEx4340 transgenic animals. Reference: Lu Y, et al. Curr Biol. 2022 Nov 7;32(21):4631-4644.e5. doi: 10.1016/j.cub.2022.09.002. PMID: 36182701. | WB-STRAIN:WBStrain00055702 | WormBase (WB) | WB | unknown | 2026-08-01 10:24:49 | 0 | ||||||
|
lin-15B&lin-15A(n765) X; hpIs774; hpEx4292. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055701 | Caenorhabditis elegans | lin-15B&lin-15A(n765) X; hpIs774; hpEx4292. | hpIs774 [twk-40p(short)::GCaMP6s::mNeptune]. hpEx4292 [pdf-1p::LoxP::eBFP::LoxP::gtACR2::Cherry + twk-40p(short)::Cre + lin-15(+)]. Pick non-Muv to maintain. Red and green fluorescence in multiple head neurons. Activation of gtACR2 reduces AVB signals but does not generate specific changes in AVA. | WBGene00023497(lin-15B)|WBGene00023498(lin-15A) | WBGene00023497(lin-15B), WBGene00023498(lin-15A) | WB-STRAIN:WBStrain00055701 | WormBase (WB) | WB | unknown | PMID:38598630 | 2026-08-01 10:24:47 | 0 | |||
|
hpEx4362. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055709 | Caenorhabditis elegans | hpEx4362. | hpEx4362 [flp-18p::cha-1(sense) + twk-40p::cha-1(antisense) + ttx-3p::GFP]. Pick animals with GFP expression in AIY to maintain. Transgenic animals exhibit reduced forward speed and body bending; this phenotype is not fully penetrate. | WB-STRAIN:WBStrain00055709 | WormBase (WB) | WB | unknown | PMID:38598630 | 2026-08-01 10:24:48 | 0 | |||||
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hda-1(cw2) II. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055652 | Caenorhabditis elegans | hda-1(cw2) II. | hda-1(cw2) mutants are viable as homozygotes, although many die as embryos or larvae. Severely uncoordinated with defective vulval development and reduced fertility. Reference: Zinovyeva AY, et al. Dev Biol. 2006 Jan 1;289(1):229-42. PMID: 16313898 | WBGene00001834(hda-1) | WBGene00001834(hda-1) | WB-STRAIN:WBStrain00055652 | WormBase (WB) | WB | unknown | 2026-08-01 10:24:46 | 0 | ||||
|
yfSi1 II. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055651 | Caenorhabditis elegans | yfSi1 II. | Made_by: Katja R Kasimatis|"yfSi1 [nspf-1p::nspf-1::6xHis::tbb-2 3' UTR + loxP, II:8420157]. C-terminal 6xHis-tagged NSPF-1 allows visualization of NSPF seminal fluid protein localization in males and hermaphrodites. Transgene inserted into ttTi5650 MosSCI site (II:8420157) using CRISPR/Cas9. Reference: Kasimatis KR, et al. (2022) No evidence of sexual conflict for a novel sperm-derived seminal fluid protein in Caenorhabditis nematodes. bioRxiv doi: https:" | WB-STRAIN:WBStrain00055651 | WormBase (WB) | WB | unknown | 2026-08-01 10:24:48 | 0 | ||||||
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lin-46(ma398[lin-46::mCherry]) V. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00055650 | Caenorhabditis elegans | lin-46(ma398[lin-46::mCherry]) V. | mCherry reporter inserted into C-terminus of endogenous lin-46 locus. Superficially wild-type. Fluorescent signal is very dim and bleaches very quickly. Reference: Ilbay O, et al. C. elegans LIN-28 controls temporal cell-fate progression by regulating LIN-46 expression via the 5UTR of lin-46 mRNA. bioRxiv 697490; doi: https: | WBGene00003031(lin-46) | WBGene00003031(lin-46) | WB-STRAIN:WBStrain00055650 | WormBase (WB) | WB | unknown | 2026-08-01 10:24:46 | 0 |
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