Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
| Organism Name | Proper Citation | Species | Synonyms |
Notes |
Phenotype | Affected Gene | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cdh-9(ot1095[cdh-9::T2A::GFP::H2B]) X. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062817 | Caenorhabditis elegans | cdh-9(ot1095[cdh-9::T2A::GFP::H2B]) X. | Made_by: SUNY Biotech|"SL2::GFP::H2B tag inserted at C-terminus of endogenous cdh-9 locus." | WBGene00000401(cdh-9) | WBGene00000401(cdh-9) | WB-STRAIN:WBStrain00062817 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:08 | 0 | ||||
|
vps-50(n4022) III. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062770 | Caenorhabditis elegans | vps-50(n4022) III. | Made_by: Nick Paquin|"vps-50 mutants are abnormal in locomotion and egg laying. n4022 is a strong loss-of-function allele; unknown if null. Reference: Paquin N, et al. Curr Biol. 2016 Apr 4;26(7):862-71. doi: 10.1016/j.cub.2016.01.049. PMID: 26948874." | WBGene00008078(vps-50) | WBGene00008078(vps-50) | WB-STRAIN:WBStrain00062770 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||
|
irk-1(n4895) X. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062771 | Caenorhabditis elegans | irk-1(n4895) X. | Egl-c. Suppresses egg-laying defect of egl-6(gf). Reference: Emtage L, et al. J Neurosci. 2012 Nov 14;32(46):16285-95. doi: 10.1523/JNEUROSCI.2667-12.2012. PMID: 23152612.|"Made_by: Niels Ringstad/Bob Horvitz" | WBGene00002149(irk-1) | WBGene00002149(irk-1) | WB-STRAIN:WBStrain00062771 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||
|
ufIs26 II; vsIs13 IV. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062774 | Caenorhabditis elegans | ufIs26 II; vsIs13 IV. | Made_by: Seth Taylor|"ufIs26 [unc-4p::mCherry + lin-15(+)] II. vsIs13 [lin-11::pes-10::GFP + lin-15(+)] IV. GFP expression in six VC neurons and posterior intestine. VC neurons are labeled with both GFP and mCherry; co-labeling in VCs1-5 is brightest during L4 stage. Derived by crossing parental strains NC2957 and LX959. Can be used to isolate VC neurons by FACS. Used by CeNGEN project for RNA-Seq (https:" | WB-STRAIN:WBStrain00062774 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||||
|
ynIs37 III; juIs223 IV. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062773 | Caenorhabditis elegans | ynIs37 III; juIs223 IV. | ynIs37 [flp-13::GFP] III. juIs223 [ttr-39p::mCherry + ttx-3p::GFP] IV. ttr-39::mCherry alone marks VD and DD neurons. ttx-3::GFP marks AIY neurons. Combined ttr-39::mCherry and flp-13::GFP co-expression marks DD neurons in the L2 (only a few mCherry+/GFP+ DD neurons will show up briefly in the L2 stage and gene silencing apparently dims the GFP marker over time). VD neurons can be identified by mCherry alone, no GFP. Derived by crossing parental strains CZ8332 and NY2037. Can be used to isolate VB neurons by FACS. Used by CeNGEN project for RNA-Seq (https: | WB-STRAIN:WBStrain00062773 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||||
|
casy-1(ot1082) II. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062811 | Caenorhabditis elegans | casy-1(ot1082) II. | CRISPR/Cas9 engineered deletion of full casy-1 locus.|"Made_by: Maryam Majeed" | WBGene00000403(casy-1) | WBGene00000403(casy-1) | WB-STRAIN:WBStrain00062811 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:08 | 0 | ||||
|
Caenorhabditis tropicalis wild isolate. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062779 | Caenorhabditis tropicalis | Caenorhabditis tropicalis wild isolate. | Caenorhabditis tropicalis wild isolate. Reference: Toker IA, et al. bioRxiv 2024.11.23.624988; doi: https: | WB-STRAIN:WBStrain00062779 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||||
|
myls13; oyIs51. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062776 | Caenorhabditis elegans | myls13; oyIs51. | Made_by: Abby Poff|"myls13 [klp-6p::GFP]. oyIs51 [srh-142::RFP]. IL2 neurons are marked with GFP. ADF neurons are marked with RFP. Derived from parental line PY3470. Can be used to isolate IL2 neurons (GFP) and ADF neurons (RFP) by FACS. Used by CeNGEN project for RNA-Seq (https:" | WB-STRAIN:WBStrain00062776 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||||
|
him-5(e1490) V; otEx7231. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062803 | Caenorhabditis elegans | him-5(e1490) V; otEx7231. | Made_by: Maryam Majeed|"otEx7231 [srg-8p::rab-3::GFP + srg-8p::mCherry]. Pick animals with mCherry expression to maintain. Presynaptic RAB-3::GFP reporter for ASK neurons with cytoplasmic ASKp::mCherry in the background. Reference: Majeed M, et al. Elife. 2024 Jan 15:12:RP91775. doi: 10.7554/eLife.91775. PMID: 38224479." | WBGene00001864(him-5) | WBGene00001864(him-5) | WB-STRAIN:WBStrain00062803 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:08 | 0 | ||||
|
cdh-1(ot1034) III. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062809 | Caenorhabditis elegans | cdh-1(ot1034) III. | CRISPR/Cas9 engineered deletion of full cdh-1 locus.|"Made_by: Maryam Majeed" | WBGene00019994(cdh-1) | WBGene00019994(cdh-1) | WB-STRAIN:WBStrain00062809 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:08 | 0 | ||||
|
otEx7501. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062806 | Caenorhabditis elegans | otEx7501. | Made_by: Steven J Cook|"otEx7501 [pdfr-1::GFP::cla-1 + pdfr-1::tagRFP + rol-6(su1006)]. Pick Rollers to maintain. Presynaptic GFP::cla-1 reporter for pharyngeal I1 neurons. Reference: Cook SJ, et al. J Comp Neural. 2020 Nov 1;528(16):2767-2784. doi: 10.1002/cne.24932. PMID: 32352566." | WB-STRAIN:WBStrain00062806 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:08 | 0 | ||||||
|
mirSi16 II; eat-4(mir12[loxP 5'UTR] mir17[loxP intron2]) III; mirIs47. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062763 | Caenorhabditis elegans | mirSi16 II; eat-4(mir12[loxP 5'UTR] mir17[loxP intron2]) III; mirIs47. | mirSi16 [flp-18p::lox2272::BFP::tbb-2 3'UTR::lox2272::ChR2-HRDC::SL2::jRGECO1a::unc-54 3'UTR + Cbr-unc-119(+)] II. mirIs47 [sra-6p::TeNL + npr-9p::ChR2-HRDC::YFP::jRGECO1a + unc-119(+) + gpa:14p::CRE]. Blue fluorescence in flp-18 expressing neurons. loxP sites before first (eat-4(mir12[loxP 5'UTR])) and after second exon (eat-4(mir17[loxP intron2])) of eat-4 gene. Lite. Calcium sensitive (Kd 250 nM) teal nanolantern (TeNL) in ASH and PVQ, ChR2-HRDC::YFP and jRGECO1a expression in AIB. Conditional eat-4 KO in ASH (NOT defective) and ChR2-HRDC and jRGECO1a expression in AVA (instead of BFP). Reference: Porta-de-la-Riva M, et al. Nat Methods. 2023 May;20(5):761-769. doi: 10.1038/s41592-023-01836-9. PMID: 37024651. | WBGene00001135(eat-4) | WBGene00001135(eat-4) | WB-STRAIN:WBStrain00062763 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||
|
eat-4(mir12[loxP 5'UTR] mir17[loxP intron2]) III; lite-1 (ce314) X. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062764 | Caenorhabditis elegans | eat-4(mir12[loxP 5'UTR] mir17[loxP intron2]) III; lite-1 (ce314) X. | loxP sites inserted before first (eat-4(mir12[loxP 5'UTR])) and after second (eat-4(mir17[loxP intron2])) exon of eat-4 gene. Lite. Reference: Porta-de-la-Riva M, et al. Nat Methods. 2023 May;20(5):761-769. doi: 10.1038/s41592-023-01836-9. PMID: 37024651. | WBGene00001135(eat-4)|WBGene00001803(lite-1) | WBGene00001135(eat-4), WBGene00001803(lite-1) | WB-STRAIN:WBStrain00062764 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||
|
bus-17(br2) X; mirEx123. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062762 | Caenorhabditis elegans | bus-17(br2) X; mirEx123. | mirEx123 [myo-3p::TeNL::unc-54 3' UTR]. Maintain strain by picking animals with blue fluorescence. bus-17(br2) has mutant defective response to short wavelength light; response strongly reduced but not eliminated. Altered surface properties; somewhat skiddy movement; drug-sensitive, bleach-sensitive. Resistant to some bacterial pathogens (hence Bus, Bah phenotypes) and hypersensitive to others. Calcium sensitive (Kd 250 nM) teal nanolantern (TeNL) in muscles. Reference: Morales-Curiel LF, et al. Commun Biol. 2022 Dec 3;5(1):1330. doi: 10.1038/s42003-022-04292-x. PMID: 36463346. | WBGene00044630(bus-17) | WBGene00044630(bus-17) | WB-STRAIN:WBStrain00062762 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||
|
mirSi29 II; unc-119(ed3) III. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062767 | Caenorhabditis elegans | mirSi29 II; unc-119(ed3) III. | Made_by: Neus Sanfeliu Cerdan|"mirSi29 [flp-18p::lox2272::mtagBFP2::tbb-2 3'UTR::lox2272::ACR1::SL2::jRGECO1a::let-858 3'UTR + Cbr-unc-119(+)] II. Blue fluorescence in flp-18 expressing neurons. Combine with CRE driven by a promoter co-expressed in flp-18 expressing cells to switch from blue expression to ACR1 and jRGECO1a expression. Reference: Porta-de-la-Riva M, et al. Nat Methods. 2023 May;20(5):761-769. doi: 10.1038/s41592-023-01836-9. PMID: 37024651." | WBGene00006843(unc-119) | WBGene00006843(unc-119) | WB-STRAIN:WBStrain00062767 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||
|
daf-2(e1370) III; isp-1(qm150) IV/nT1[qIs51] (IV;V). Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062800 | Caenorhabditis elegans | daf-2(e1370) III; isp-1(qm150) IV/nT1[qIs51] (IV;V). | Maintain at 15-20C: will form dauers at higher temps. Slow growing. Pick GFP+ to maintain. Heterozygotes are GFP+ and segregate WT GFP+ hets, arrested nT1[qIs51] aneuploids, and non-GFP daf-2(e1370); isp-1(qm150) homozygotes (sterile). Homozygous nT1[qIs51] inviable. Pick WT GFP and check for correct segregation of progeny to maintain. [NOTE: Originally published daf-2(e1370); isp-1(qm150) strain MQ876 was found to not actually contain the daf-2(e1370) mutation. This strain was made to study the double mutant and revealed that daf-2(e1370); isp-1(qm150) homozygotes are inviable/sterile.] Reference: Cooper et al. In preparation. | WBGene00000898(daf-2)|WBGene00002162(isp-1) | WBGene00000898(daf-2), WBGene00002162(isp-1) | WB-STRAIN:WBStrain00062800 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:08 | 0 | ||||
|
mirSi34 II; unc-119(ed3) III. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062768 | Caenorhabditis elegans | mirSi34 II; unc-119(ed3) III. | Made_by: Neus Sanfeliu Cerdan|"mirSi34 [myo-3p::lox2272::mtagBFP2::tbb-2 3'UTR::lox2272::ChR2-HRDC::SL2::jRGECO1a::let-858 3'UTR + Cbr-unc-119(+)] II. Blue fluorescence in body wall muscles. Combine with CRE driven by a promoter expressed in desired muscle cells to switch from blue expression to ChR2-HRDC and jRGECO1a expression. Reference: Porta-de-la-Riva M, et al. Nat Methods. 2023 May;20(5):761-769. doi: 10.1038/s41592-023-01836-9. PMID: 37024651." | WBGene00006843(unc-119) | WBGene00006843(unc-119) | WB-STRAIN:WBStrain00062768 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||
|
mirSi16 II; mirIs76; mirEx69. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062765 | Caenorhabditis elegans | mirSi16 II; mirIs76; mirEx69. | mirSi16 [flp-18p::lox2272::BFP::tbb-2 3'UTR::lox2272::ChR2-HRDC::SL2::jRGECO1a::unc-54 3'UTR + Cbr-unc-119(+)] II. mirIs76 [sra-6p::ChRmine::wrmScarlet::let-858 3UTR + sra-6p::TeNL]. mirEx69 [gpa:14p::CRE + unc-122p::mCherry]. Mantain by picking animals with mCherry+ coelomycetes. Blue in flp-18 expressing neurons. Expression of ChRmine, wrmScarlet and calcium sensitive (Kd 250 nM) teal nanolantern (TeNL) in ASH and PVQ. Expression of ChR2-HRDC and jRGECO1a expression in AVA (instead of BFP). Reference: Porta-de-la-Riva M, et al. Nat Methods. 2023 May;20(5):761-769. doi: 10.1038/s41592-023-01836-9. PMID: 37024651. | WB-STRAIN:WBStrain00062765 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||||
|
mirSi16 II; unc-119(ed3) III; mirIs110 V; mirIs107. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062758 | Caenorhabditis elegans | mirSi16 II; unc-119(ed3) III; mirIs110 V; mirIs107. | mirSi16 [flp-18p::lox2272::BFP::tbb-2 3'UTR::lox2272::ChR2-HRDC::SL2::jRGECO1a::unc-54 3'UTR + Cbr-unc-119(+)] II. mirIs110 [odr-7p::TeNL + unc-122p::GFP *oxTi553 [eft-3p::tdTomato::H2B::unc-54 3'UTR + Cbr-unc-119(+)]] V. mirIs107 [gpa:14p::CRE + npr-9p::ChR-HRDC::YFP::SL2::jRGECO1a + rps-0p::hygroR]. Blue fluorescence in flp-18 expressing neurons. Green coelomycetes segregates with calcium sensitive (Kd 250 nM) teal nanolantern (TeNL) in AWA. ChR2-HRDC and jRGECO1a in AVA (instead of BFP) and ChR2-HRDC::YFP and jRGECO1a in AIB. HygroR. Reference: Porta-de-la-Riva M, et al. Nat Methods. 2023 May;20(5):761-769. doi: 10.1038/s41592-023-01836-9. PMID: 37024651. | WBGene00006843(unc-119) | WBGene00006843(unc-119) | WB-STRAIN:WBStrain00062758 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 | ||||
|
mirSi16 II; unc-119(ed3) III. Resource Report Resource Website |
RRID:WB-STRAIN:WBStrain00062759 | Caenorhabditis elegans | mirSi16 II; unc-119(ed3) III. | mirSi16 [flp-18p::lox2272::BFP::tbb-2 3'UTR::lox2272::ChR2-HRDC::SL2::jRGECO1a::unc-54 3'UTR + Cbr-unc-119(+)] II. Blue fluorescence in flp-18 expressing neurons. Combine with CRE driven by a promoter co-expressed in flp-18 expressing cells to switch from blue expression to ChR2-HRDC and jRGECO1a expression. Reference: Porta-de-la-Riva M, et al. Nat Methods. 2023 May;20(5):761-769. doi: 10.1038/s41592-023-01836-9. PMID: 37024651. | WBGene00006843(unc-119) | WBGene00006843(unc-119) | WB-STRAIN:WBStrain00062759 | WormBase (WB) | WB | unknown | 2026-08-29 09:31:07 | 0 |
Can't find your Organism?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. If you want to find a specific organism, it's easier to enter an RRID or a Catalog Number to search. You can refine the search results using Facets on the left side of the search results page. If you are on the table view, you can also search in a specific column by clicking the column title and enter the keywords.
If you still could not find your organism in the search results, please help us by registering it into the system — it's easy. Organisms identifiers are registered through multiple sources depending on the species:
Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
