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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), European Xenopus Resource Center (frog), The National Xenopus Resource (frog), Xenopus Express (frog), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish). Note, the IMSR data is linked, but users may need to re-execute the search if the top mouse is not returned properly.
Note: BCBC is no longer in service, so the links may not be functional.
http://www.wormbase.org/db/get?name=WBStrain00030264
Source Database: WormBase (WB)
Affected Genes: WBGene00006843(unc-119)
Genomic Alteration: WBGene00006843(unc-119)
Availability: unknown
Source References: EMPTY
Synonyms: unc-119(tm4063) III; wgIs482.
Alternate IDs: WB-STRAIN:OP482
Notes: Made_by: DKV/RJT/PW|"Modern strain"|"no longer available from the CGC."|"wgIs482 [nhr-47::TY1::EGFP::3xFLAG(92C12) + unc-119(+)]. Maintain at 20 degrees. TY1::EGFP::3xFLAG tag inserted in frame at C-terminus of coding sequence by recombineering. Expression of transgene confirmed by GFP. References: Sarov, M, et al. Nat Methods (2006) 10:839-44. Zhong, M, et al. PLoS Genet (2010) 6(2):e1000848. Strain was constructed as part of the Regulatory Element Project, part of modENCODE (URL: www.modencode.org)"
Proper citation: RRID:WB-STRAIN:WBStrain00030264 Copy
http://www.wormbase.org/db/get?name=WBStrain00030244
Source Database: WormBase (WB)
Affected Genes: WBGene00003670(nhr-80)
Genomic Alteration: WBGene00003670(nhr-80)
Availability: unknown
Source References: EMPTY
Synonyms: unc-119(tm4063);wgls461[WRM066C_C11(pRedFlp-Hgr)(nhr-80[19605]::S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFlag)dFRT::unc-119-Nat]
Alternate IDs: WB-STRAIN:OP461
Notes: Imported directly from the transgeneOme database.|"Modern strain"
Proper citation: RRID:WB-STRAIN:WBStrain00030244 Copy
http://www.wormbase.org/db/get?name=WBStrain00030242
Source Database: WormBase (WB)
Affected Genes: WBGene00008208(nhr-167)
Genomic Alteration: WBGene00008208(nhr-167)
Availability: unknown
Source References: EMPTY
Synonyms: unc-119(tm4063);wgIs459[WRM063A_G06(pRedFlp-Hgr)(nhr-167[24404]::S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFlag)dFRT::unc-119-Nat]
Alternate IDs: WB-STRAIN:OP459
Notes: Imported directly from the transgeneOme database.
Proper citation: RRID:WB-STRAIN:WBStrain00030242 Copy
http://www.wormbase.org/db/get?name=WBStrain00030292
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:OP514
Notes: EMPTY
Proper citation: RRID:WB-STRAIN:WBStrain00030292 Copy
http://www.wormbase.org/db/get?name=WBStrain00030227
Source Database: WormBase (WB)
Affected Genes: WBGene00003692(nhr-102)
Genomic Alteration: WBGene00003692(nhr-102)
Availability: unknown
Source References: EMPTY
Synonyms: unc-119(tm4063);wgls440[WRM0620A_C06(pRedFlp-Hgr)(nhr-102[31966]::S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFlag)dFRT::unc-119-Nat]
Alternate IDs: WB-STRAIN:OP440
Notes: Imported directly from the transgeneOme database.|"Modern strain"
Proper citation: RRID:WB-STRAIN:WBStrain00030227 Copy
http://www.wormbase.org/db/get?name=WBStrain00030225
Source Database: WormBase (WB)
Affected Genes: WBGene00015355(C02F12.5)
Genomic Alteration: WBGene00015355(C02F12.5)
Availability: unknown
Source References: EMPTY
Synonyms: unc-119(tm4063);wgIs438[WRM0622C_F02(pRedFlp-Hgr)(C02F12.5[17335]::S0001_pR6K_Amp_2xTY1ce_EGFP_FRT_rpsl_neo_FRT_3xFlag)dFRT::unc-119-Nat]
Alternate IDs: WB-STRAIN:OP438
Notes: Imported directly from the transgeneOme database.|"Modern strain"
Proper citation: RRID:WB-STRAIN:WBStrain00030225 Copy
http://www.wormbase.org/db/get?name=WBStrain00030223
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:OP436
Notes: Modern strain
Proper citation: RRID:WB-STRAIN:WBStrain00030223 Copy
http://www.wormbase.org/db/get?name=WBStrain00030450
Source Database: WormBase (WB)
Affected Genes: WBGene00006843(unc-119)
Genomic Alteration: WBGene00006843(unc-119)
Availability: unknown
Source References: EMPTY
Synonyms: unc-119(tm4063) III; wgIs716.
Alternate IDs: WB-STRAIN:OP716
Notes: Made_by: DKV/RJT/PW|"Modern strain"|"wgIs716 [F26F4.8::TY1::EGFP::3xFLAG + unc-119(+)]. TY1::EGFP::3xFLAG tag inserted in frame at C-terminus of coding sequence by recombineering. Expression of transgene confirmed by GFP. References: Sarov M, et al. Nat Methods (2006) 10:839-44. Zhong, M, et al. PLoS Genet (2010) 6(2):e1000848. Strain was constructed as part of the Regulatory Element Project, part of modENCODE (URL: www.modencode.org)."
Proper citation: RRID:WB-STRAIN:WBStrain00030450 Copy
http://www.wormbase.org/db/get?name=WBStrain00030553
Source Database: WormBase (WB)
Availability: unknown
Source References: PMID:33313486, PMID:33458604, PMID:33693840, PMID:34156835, PMID:37008729, PMID:36595469, PMID:37170380, PMID:37590248, PMID:37777524, PMID:38596360, PMID:38488606, PMID:38771761, PMID:39712935
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:PD1074
Notes: A defined and recently cloned population of animals derived from the original Bristol variant of C. elegans originally obtained by Brenner from E. Dougherty with no known history of mutagenesis. Brenners original population, called N2, was used as the basis for the vast majority of laboratory strains in use currently. No early frozen stock of the unmutagenized N2 population currently exists, but later stocks were available from several laboratories. PD1074 is a clonal population founded by picking a single worm of one such stock, VC3510. VC3510 in turn derives from a subpopulation of N2 described in the literature as VC2010. PD1074 is intended to be used as a wild type reference strain with the closely matched genome assembly of Yoshimura et al (ref) available on Wormbase as VC2010-1.0. (ENA study accession PRJEB28388; assembly accession GCA_900538205). We note that PD1074 is expected to be largely similar to most lab N2 strains, but that as a clonal isolate derived from N2, there will be some loci that will vary compared to any other particular N2 isolate. One such example is a partial deletion of the alh-2 locus in PD1074. Additional loci that were found to vary between the prior N2 reference genome (WormBase release WS264) and the VC2010-1.0 assembly are detailed in supplemental table 8 in Yoshimura et al (ref).|"A defined and recently cloned population of animals derived from the original Bristol variant of C. elegans originally obtained by Brenner from E. Dougherty with no known history of mutagenesis. Brenners original population, called N2, was used as the basis for the vast majority of laboratory strains in use currently. No early frozen stock of the unmutagenized N2 population currently exists, but later stocks were available from several laboratories. PD1074 is a clonal population founded by picking a single worm of one such stock, VC3510. VC3510 in turn derives from a subpopulation of N2 described in the literature as VC2010. PD1074 is intended to be used as a wild type reference strain with the closely matched genome assembly of Yoshimura, et al. (Genome Res. 2019 Jun;29(6):1009-1022) available on Wormbase as VC2010-1.0. (ENA study accession PRJEB28388; assembly accession GCA_900538205). We note that PD1074 is expected to be largely similar to most lab N2 strains, but that as a clonal isolate derived from N2, there will be some loci that will vary compared to any other particular N2 isolate. One such example is a partial deletion of the alh-2 locus in PD1074. Additional loci that were found to vary between the prior N2 reference genome (WormBase release WS264) and the VC2010-1.0 assembly are detailed in supplemental table 8 in Yoshimura, et al, (2019)."|"Added Wild_Isolate tag as genotype info suggesting that they were sampled from the wild."|"Made_by: Karen Artiles & Mark Edgley"|"no longer available from the CGC."|"Supplementary_genotype"|"WBStrain provided so WBPaper00061243 paper added based on AFP_Strain data."|"WBStrain provided so WBPaper00061573 paper added based on AFP_Strain data."
Proper citation: RRID:WB-STRAIN:WBStrain00030553 Copy
http://www.wormbase.org/db/get?name=WBStrain00030568
Source Database: WormBase (WB)
Affected Genes: WBGene00004010(pha-1)|WBGene00006789(unc-54)
Genomic Alteration: WBGene00004010(pha-1), WBGene00006789(unc-54)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:PD3852
Notes: EMPTY
Proper citation: RRID:WB-STRAIN:WBStrain00030568 Copy
http://www.wormbase.org/db/get?name=WBStrain00030566
Source Database: WormBase (WB)
Availability: unknown
Source References: PMID:21177965
Synonyms: rrf-3(pk1426);him-8(e1489)
Alternate IDs: WB-STRAIN:PD3330
Notes: EMPTY
Proper citation: RRID:WB-STRAIN:WBStrain00030566 Copy
http://www.wormbase.org/db/get?name=WBStrain00030525
Source Database: WormBase (WB)
Affected Genes: WBGene00002344(let-70)
Genomic Alteration: WBGene00002344(let-70)
Availability: unknown
Source References: EMPTY
Synonyms: let-70(ns770) IV.
Alternate IDs: WB-STRAIN:OS10523
Notes: Exhibits sterility and inappropriate linker cell survival in males. Occasionally exhibits lack of distal tip cell migration in hermaphrodites. Reference: Kinet MJ, et al. Elife. 2016 Mar 8;5. pii: e12821.|"Made_by: J. Zuckerman Malin"
Proper citation: RRID:WB-STRAIN:WBStrain00030525 Copy
http://www.wormbase.org/db/get?name=WBStrain00030571
Source Database: WormBase (WB)
Affected Genes: WBGene00004010(pha-1)|WBGene00006789(unc-54)
Genomic Alteration: WBGene00004010(pha-1), WBGene00006789(unc-54)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:PD3866
Notes: EMPTY
Proper citation: RRID:WB-STRAIN:WBStrain00030571 Copy
http://www.wormbase.org/db/get?name=WBStrain00030572
Source Database: WormBase (WB)
Affected Genes: WBGene00004010(pha-1)|WBGene00006789(unc-54)
Genomic Alteration: WBGene00004010(pha-1), WBGene00006789(unc-54)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:PD3872
Notes: EMPTY
Proper citation: RRID:WB-STRAIN:WBStrain00030572 Copy
http://www.wormbase.org/db/get?name=WBStrain00030578
Source Database: WormBase (WB)
Affected Genes: WBGene00000185(arg-1)
Genomic Alteration: WBGene00000185(arg-1)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:PD4444
Notes: EMPTY
Proper citation: RRID:WB-STRAIN:WBStrain00030578 Copy
http://www.wormbase.org/db/get?name=WBStrain00030586
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:PD4656
Notes: EMPTY
Proper citation: RRID:WB-STRAIN:WBStrain00030586 Copy
http://www.wormbase.org/db/get?name=WBStrain00030604
Source Database: WormBase (WB)
Affected Genes: WBGene00001948(hlh-1)
Genomic Alteration: WBGene00001948(hlh-1)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:PD7963
Notes: EMPTY
Proper citation: RRID:WB-STRAIN:WBStrain00030604 Copy
http://www.wormbase.org/db/get?name=WBStrain00030651
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:PF207
Notes: EMPTY
Proper citation: RRID:WB-STRAIN:WBStrain00030651 Copy
http://www.wormbase.org/db/get?name=WBStrain00030658
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:PF214
Notes: EMPTY
Proper citation: RRID:WB-STRAIN:WBStrain00030658 Copy
http://www.wormbase.org/db/get?name=WBStrain00030656
Source Database: WormBase (WB)
Availability: unknown
Source References: EMPTY
Synonyms: EMPTY
Alternate IDs: WB-STRAIN:PF212
Notes: EMPTY
Proper citation: RRID:WB-STRAIN:WBStrain00030656 Copy
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