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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
liftOver Resource Report Resource Website 500+ mentions |
liftOver (RRID:SCR_018160) | software resource, service resource, data processing software, software application | Web tool to convert genome coordinates and genome annotation files between assemblies. Used to translate genomic coordinates from one assembly version into another and retrieves putative orthologous regions in other species using UCSC chained and netted alignments. | Convert genome coordinate, genome annotation file, translate genomic coordinate, assembly version, retrieve orthologous region |
is related to: UCSC Genome Browser has parent organization: University of California at Santa Cruz; California; USA |
NHGRI ; Howard Hughes Medical Institute ; NCI |
DOI:10.1093/nar/gkj144 | Free, Available for download, Freely available | SCR_018160 | 2026-08-02 09:07:54 | 762 | ||||||||
|
University of California at Santa Cruz; California; USA Resource Report Resource Website 10+ mentions |
University of California at Santa Cruz; California; USA (RRID:SCR_011624) | UCSC | university | Public research university in Santa Cruz, California. It is one of 10 campuses in the University of California system. |
is related to: Structure Harvester has parent organization: University of California; California; USA is parent organization of: BISC is parent organization of: Spliceosome Database is parent organization of: Cancer Genomics Hub is parent organization of: In-Silico PCR is parent organization of: VisiGene Image Browser is parent organization of: NanoStriDE is parent organization of: UCSC Genome Browser is parent organization of: ENCODE is parent organization of: GtRNAdb - Genomic tRNA Database is parent organization of: Yeast Intron Database is parent organization of: BigWig and BigBed is parent organization of: The Intronerator is parent organization of: EyeBrowse is parent organization of: tRNAscan-SE is parent organization of: tRNAscan-SE is parent organization of: UCSC Cancer Genomics Browser is parent organization of: BLAT is parent organization of: University of California Santa Cruz Labs and Facilities is parent organization of: Pecan is parent organization of: Consensus CDS is parent organization of: GenomeSpace is parent organization of: Encode is parent organization of: liftOver is parent organization of: XRNA is parent organization of: UCSC Xena is parent organization of: University of California, Santa Cruz Chemical Screening Center Core Facility is parent organization of: University of California at Santa Cruz Life Sciences Microscopy Center Core Facility is parent organization of: University of California, Santa Cruz IBSC Flow Cytometry Core Facility is parent organization of: University of California Santa Cruz Macromolecular Structure Function Core Facility is parent organization of: University of California at Santa Cruz Institute for Biology of Stem Cells Cell Culture Core Facility is parent organization of: University of California Santa Cruz Banana Slug Genomics Center Core Facility is parent organization of: University of California at Santa Cruz Biomolecular Cryo Electron Microscopy Core Facility is parent organization of: University of California at Santa Cruz Plasma Analytical Laboratory Core Facility is parent organization of: University of California at Santa Cruz Marine Analytical Laboratory Core Facility is parent organization of: University of California at Santa Cruz Stable Isotope Laboratory Core Facility is parent organization of: UCSC Cell Browser is parent organization of: miRCode is parent organization of: tRNA Analysis of eXpression |
nlx_63906, Wikidata:Q1047293, Crossref funder ID:100006358, grid.205975.c, ISNI:0000 0001 0740 6917 | https://ror.org/03s65by71 | SCR_011624 | UCSC | 2026-08-01 12:04:28 | 29 | ||||||||
|
UCSC Genome Browser Resource Report Resource Website 10000+ mentions Rating or validation data |
UCSC Genome Browser (RRID:SCR_005780) | project portal, data or information resource, database, portal, service resource | Portal to interactively visualize genomic data. Provides reference sequences and working draft assemblies for collection of genomes and access to ENCODE and Neanderthal projects. Includes collection of vertebrate and model organism assemblies and annotations, along with suite of tools for viewing, analyzing and downloading data. | Reference, sequence, assembly, collection, genome, visualize, genomic, data, ENCODE, Neanderthal, project, sequencing |
is used by: VizHub is used by: Blueprint Epigenome is used by: QmRLFS-finder is used by: International Human Epigenome Consortium Data Portal is used by: iPiG is listed by: re3data.org is listed by: OMICtools is listed by: Educational Resources in Neuroscience is listed by: SoftCite is related to: HEXEvent is related to: PicTar is related to: Phenotree is related to: Enhancer Trap Line Browser is related to: CistromeFinder is related to: ENCODE is related to: Human Epigenome Atlas is related to: ENCODE is related to: BigWig and BigBed is related to: PhenCode is related to: doRiNA is related to: ISCA Consortium is related to: WashU Epigenome Browser is related to: CRISPOR is related to: liftOver is related to: kent has parent organization: University of California at Santa Cruz; California; USA works with: TarBase works with: bedGraphToBigWig |
UC BIOTEuropean UnionH ; Alfred P. Sloan Foundation ; David and Lucille Packard Foundation ; NIH ; HHMI ; CISI ; NHGRI ; DOE ; NSF DBI 9809007; NIGMS GM52848 |
PMID:12045153 PMID:22908213 PMID:23155063 |
OMICS_00926, SCR_017502, nif-0000-03603, SciEx_217, SCR_012479, r3d100010243 | http://genome.cse.ucsc.edu, https://doi.org/10.17616/R3RK5C | SCR_005780 | The Human Genome Browser at UCSC, UCSC Genome Browser Group, University of California at Santa Cruz Genome Browser, UCSC Genome Bioinformatics | 2026-08-02 09:04:21 | 10026 |
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