Searching the RRID Resource Information Network

Our searching services are busy right now. Please try again later

  • Register
X
Forgot Password

If you have forgotten your password you can enter your email here and get a temporary password sent to your email.

X

Leaving Community

Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.

No
Yes

Preparing word cloud

×

SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

Search

Type in a keyword to search

Filter by records added date
See new records

Options


Facets


Recent searches

Snippet view Table view
Click the to add this resource to a Collection

3 Results - per page

Show More Columns | Download 3 Result(s)

Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Hipposeq
 
Resource Report
Resource Website
10+ mentions
Hipposeq (RRID:SCR_015730) data analysis software, data or information resource, data processing software, database, sequence analysis software, software application, software resource, web application Database of RNA-seq gene expression in hippocampal principal neurons. Hipposeq can analyze and visualize RNA-seq data for all excitatory cell populations in the hippocampus at multiple levels of granularity. rna seq, gene expression, sequencing, hippocampus, principal neuron has parent organization: Janelia Research
has parent organization: Howard Hughes Medical Institute
Howard Hughes Medical Institute PMID:27113915 Freely available SCR_015730 Hippocampus RNA-seq atlas 2026-09-05 06:27:58 32
Janelia Research
 
Resource Report
Resource Website
1+ mentions
Janelia Research (RRID:SCR_004257) Janelia Research data or information resource, organization portal, portal, software resource HHMI Center for integrated teams of lab scientists and tool builders to share methods, results, and tools with the scientific community. Janelia Research campus is a research campus of the Howard Hughes Medical Institute located in Ashburn, Virginia. HHMI, integrated, team, scientist, tool, build, share, method, result, medical lists: Frealign
is related to: Virtual Fly Brain
is related to: CTFFIND
has parent organization: Howard Hughes Medical Institute
is parent organization of: Skylign
is parent organization of: Eddy Lab Software
is parent organization of: Hanchuan Peng Shared Software
is parent organization of: Fly EM
is parent organization of: Vaa3D
is parent organization of: Volume image object AnNOtation System
is parent organization of: Hmmer
is parent organization of: Neuroptikon
is parent organization of: V3D
is parent organization of: Infernal
is parent organization of: Paper Rejection Repository
is parent organization of: Neurodata Without Borders
is parent organization of: Hipposeq
is parent organization of: Janelia: Tip-Tilt-Z Sample Positioner
is parent organization of: MouseLight Project
is parent organization of: MouseLight Neuron Browser
nlx_26970 SCR_004257 Janelia Farm Research Campus, Janelia, Janelia Farm, Janelia Research Campus, HHMI Janelia Farm Research Campus, Janelia Research 2026-09-05 06:30:39 9
Howard Hughes Medical Institute
 
Resource Report
Resource Website
100+ mentions
Howard Hughes Medical Institute (RRID:SCR_011281) HHMI institution Nonprofit medical research organization that ranks as one of the nation's largest philanthropies for advancing biomedical research and science education in the United States. Known for its scientific research and modern architecture. institution, medical, research, nonprofit, biomedical, USA is related to: Beta Cell Biology Consortium
is related to: Falcon
has parent organization: United States Department of Health and Human Services granting agency
is parent organization of: Janelia Research
is parent organization of: Biointeractive
is parent organization of: Open Access Series of Imaging Studies
is parent organization of: DIADEM Challenge: DIgital reconstruction of Axonal and DEndritic Morphology (DIADEM) Software Development Competition
is parent organization of: iBioSeminars
is parent organization of: neurospy
is parent organization of: Jackal
is parent organization of: DelPhi
is parent organization of: Eddy Lab Software
is parent organization of: Hipposeq
is parent organization of: MIMMS microscope 1.0 (2016)
is parent organization of: Howard Hughes Medical Institute at Janelia Research Campus Light Microscopy Core Facility
is parent organization of: Howard Hughes Medical Institute at Janelia Research Campus Flow Cytometry Shared Resource Core Facility
is parent organization of: Modular LED Displays project
is parent organization of: Howard Hughes Medical Institute at Janelia Research Campus Viral Tools Shared Resource Core Facility
is parent organization of: Howard Hughes Medical Institute at Janelia Research Campus Immortalized Cell Line Culture Shared Resource Core Facility
is parent organization of: Howard Hughes Medical Institute at Janelia Research Campus Molecular Genomics Shared Resource Core Facility
is parent organization of: Howard Hughes Medical Institute at Janelia Research Campus Janelia Experimental Technology jET Core Facility
Wikidata: Q1512226, Crossref funder ID: 100000011, ISNI: 0000 0001 2167 1581, grid.413575.1, nlx_98347 https://ror.org/006w34k90 SCR_011281 Howard Hughes Medical Institute 2026-09-05 06:27:00 228

Can't find your Tool?

We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.

Can't find the RRID you're searching for? X
X
  1. Neuroscience Information Framework Resources

    Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.

  2. Navigation

    You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.

  3. Logging in and Registering

    If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.

  4. Searching

    Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:

    1. Use quotes around phrases you want to match exactly
    2. You can manually AND and OR terms to change how we search between words
    3. You can add "-" to terms to make sure no results return with that term in them (ex. Cerebellum -CA1)
    4. You can add "+" to terms to require they be in the data
    5. Using autocomplete specifies which branch of our semantics you with to search and can help refine your search
  5. Collections

    If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.

  6. Facets

    Here are the facets that you can filter the data by.

  7. Further Questions

    If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.