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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Schrodinger Resource Report Resource Website 500+ mentions |
Schrodinger (RRID:SCR_014879) | commercial organization | Commercial ogranization which provides molecular and drug discovery software and services to researchers. American software company that develops chemical simulation software for use in pharmaceutical, biotechnology, and materials science research. Provides products ranging from general molecular modeling programs to a full suite of chemical simulation and drug design software, including ligand- and structure-based methods. | software solution, drug discovery, small molecule, computational chemistry |
is parent organization of: Epik is parent organization of: Ligprep is parent organization of: Glide is parent organization of: Phase is parent organization of: MacroModel is parent organization of: Maestro is parent organization of: Protein preparation Wizard is parent organization of: Shape screening |
Wikidata: Q7432923, ISNI: 0000 0001 0903 5603, grid.421925.9, SCR_014879 | https://ror.org/05a3z6914 | SCR_014879 | Schrodinger Inc. | 2026-08-01 12:05:09 | 782 | ||||||||
|
Glide Resource Report Resource Website 10+ mentions |
Glide (RRID:SCR_000187) | Glide | software resource, software application, simulation software | Software package which approximates a complete search of the conformational, orientational, and positional space of the ligand in a given receptor. Used in drug development for predicting protein ligand binding modes and ranking ligands via high throughput virtual screening. | ligand, receptor, docking, computation, virtual, screening, drug, discovery |
is listed by: OMICtools is listed by: SoftCite has parent organization: Schrodinger works with: Ligprep |
PMID:18428795 | Restricted | OMICS_01601 | SCR_000187 | 2026-08-01 12:01:09 | 15 | |||||||
|
MacroModel Resource Report Resource Website 100+ mentions |
MacroModel (RRID:SCR_016747) | software resource, software application, simulation software | Software package for molecular modeling. Computes free energy changes using free energy perturbation method. Used to examine molecular conformations, molecular motion, and intermolecular interactions, such as those in a ligand-receptor complex. | molecular, modeling, free, energy, changes, perturbation, method, conformation, motion, interaction, ligand, receptor, complex | has parent organization: Schrodinger | Commercially available, Free version available | https://en.freedownloadmanager.org/Windows-PC/MacroModel.html | SCR_016747 | 2026-08-01 12:05:52 | 137 | |||||||||
|
Shape screening Resource Report Resource Website 1+ mentions |
Shape screening (RRID:SCR_016750) | software resource, software application, simulation software | Software tool for shape-based superposition and similarity searching. Identifies new compounds with shapes (and, if desired, other properties) that are similar to the known binder. | shape, based, superposition, search, new, compound | has parent organization: Schrodinger | Commercially available | SCR_016750 | 2026-08-01 12:05:41 | 3 | ||||||||||
|
Phase Resource Report Resource Website 10+ mentions |
Phase (RRID:SCR_014884) | software resource, software application, simulation software | Pharmacophore modeling software to create 3D structure activity relationships, screen databases, and generate hits through establishing a chemical space occupied by active ligands. Used in drug design. | drug, design, ligand, software, pharmacophore, modeling, FASEB list |
has parent organization: Schrodinger works with: Ligprep |
Commercially available | SCR_014884 | 2026-08-01 12:05:09 | 36 | ||||||||||
|
Ligprep Resource Report Resource Website 10+ mentions |
Ligprep (RRID:SCR_016746) | Ligprep | software resource, software application, simulation software | Software tool to correct and optimize the ligands by generating different protonation states, stereochemistry, tautomers, and ring conformations. Used to generate accurate, energy minimized 3D molecular structures. | correct, optimize, ligand, protonation, stereochemistry, tautomer, conformation, energy, minimized, 3D, moleular, structure |
is listed by: OMICtools is listed by: SoftCite has parent organization: Schrodinger works with: Glide works with: Phase |
Commercially available | SCR_016746 | LigPrep, LigandPreparation, Ligand preparation | 2026-08-01 12:05:41 | 48 | ||||||||
|
Epik Resource Report Resource Website 1+ mentions |
Epik (RRID:SCR_016745) | software resource, software application, simulation software | Software program for pKa prediction and protonation state generation for drug like molecules. | predict, pKa, value, chemical, structure, drug, profile, protonation, state, molecule, Schrodinger |
is listed by: OMICtools is listed by: SoftCite has parent organization: Schrodinger |
PMID:17899391 | Commercially available | SCR_016745 | 2026-08-01 12:05:52 | 5 | |||||||||
|
Protein preparation Wizard Resource Report Resource Website 10+ mentions |
Protein preparation Wizard (RRID:SCR_016749) | software resource, software application, simulation software | Software tool for correcting common structural problems and creating reliable, all atom protein models. | correcting, structural, problem, atom, protein, model, virtual, docking, method |
is listed by: SoftCite has parent organization: Schrodinger |
Commercially available, Training available | SCR_016749 | protein preparation wizard, Protein Preparation Wizard | 2026-08-01 12:07:42 | 12 | |||||||||
|
Maestro Resource Report Resource Website 50+ mentions |
Maestro (RRID:SCR_016748) | portal, data or information resource | Software tool for all purpose molecular modeling environment. Maestro is the portal to all of Schrödinger's computational technology. Helps researchers organize and analyze data. | molecular, modeling, environment, computation, data, analyze, organize |
is listed by: SoftCite has parent organization: Schrodinger |
Commercially available, Trial available | SCR_016748 | 2026-08-01 12:08:47 | 79 |
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