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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
New England Biolabs Resource Report Resource Website 10000+ mentions |
New England Biolabs (RRID:SCR_013517) | commercial organization | An Antibody supplier. |
is parent organization of: InBase is parent organization of: Polbase is parent organization of: REBASE is parent organization of: NEBcutter |
Crossref funder ID: 100004774, nlx_152420, Wikidata: Q17134414, ISNI: 0000 0004 0376 1796, grid.273406.4 | https://ror.org/04ywg3445 | SCR_013517 | 2026-07-25 12:07:50 | 50730 | ||||||||||
|
NEBcutter Resource Report Resource Website 100+ mentions |
NEBcutter (RRID:SCR_010664) | data analysis service, service resource, production service resource, analysis service resource | This tool will take a DNA sequence and find the large, non-overlapping open reading frames using the E.coli genetic code and the sites for all Type II and commercially available Type III restriction enzymes that cut the sequence just once. By default, only enzymes available from NEB are used, but other sets may be chosen. Just enter your sequence and submit. Further options will appear with the output. The maximum size of the input file is 1 MByte, and the maximum sequence length is 300 KBases. NEBcutter produces a variety of outputs including restriction enzyme maps, theoretical digests and links into the restriction enzyme database, REBASE (http://rebase.neb.com/rebase/rebase.html). Importantly, its table of recognition sites is updated daily from REBASE and it marks all sites that are potentially affected by DNA methylation (Dam, Dcm, etc.). Many options exist to choose the enzymes used for digestion, including all known specificities, subsets of those that are commercially available or sets of enzymes that produce compatible termini. | bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools has parent organization: New England Biolabs |
PMID:12824395 | biotools:nebcutter, nlx_71778 | https://bio.tools/nebcutter | SCR_010664 | 2026-07-31 09:27:09 | 142 | ||||||||
|
InBase Resource Report Resource Website 10+ mentions |
InBase (RRID:SCR_003881) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. InBase is a curated database devoted to inteins. It developed by a commercial laboratory, New England BioLabs, that also provides products related to enzyme digests on the same website. Users can access the Intein Registry, to discover properties of individual inteins. They can also submit intein data, browse intein motfis, and view mechanisms and introductions to protein splicing. | has parent organization: New England Biolabs | PMID:10592269 PMID:11752343 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03020 | http://www.neb.com/neb/inteins.html | SCR_003881 | InBase | 2026-07-28 09:40:49 | 11 | |||||||
|
REBASE Resource Report Resource Website 100+ mentions |
REBASE (RRID:SCR_007886) | REBASE | data or information resource, database | Database of information about restriction enzymes and related proteins containing published and unpublished references, recognition and cleavage sites, isoschizomers, commercial availability, methylation sensitivity, crystal, genome, and sequence data. DNA methyltransferases, homing endonucleases, nicking enzymes, specificity subunits and control proteins are also included. Several tools are available including REBsites, BLAST against REBASE, NEBcutter and REBpredictor. Putative DNA methyltransferases and restriction enzymes, as predicted from analysis of genomic sequences, are also listed. REBASE is updated daily and is constantly expanding. Users may submit new enzyme and/or sequence information, recommend references, or send them corrections to existing data. The contents of REBASE may be browsed from the web and selected compilations can be downloaded by ftp (ftp.neb.com). Additionally, monthly updates can be requested via email., | endonuclease, enzyme, genome, archaeal, bacterial, cleavage, crystal, dna, individual protein family databases, isochizomer, methylation, methyltransferase, modification, protein, recognition, restriction, restriction enzyme, sensitivity, sequence, site, methylase, cleavage site, restriction-modification, blast, FASEB list |
has parent organization: New England Biolabs works with: Webcutter |
New England Biolabs Inc ; NLM LM04971 |
PMID:19846593 PMID:17202163 |
r3d100012171, nif-0000-03391 | http://rebase.neb.com, https://doi.org/10.17616/R3J930 | http://www.neb.com/rebase | SCR_007886 | The Restriction Enzyme Database, Restriction Enzyme Database | 2026-07-28 09:41:55 | 246 | ||||
|
Polbase Resource Report Resource Website |
Polbase (RRID:SCR_006107) | data or information resource, data repository, storage service resource, database, service resource | Repository of biochemical, genetic, and structural information about DNA Polymerases. Polbase is designed to compile detailed results of polymerase experimentation, presenting them in a dynamic view to inform further research. After validation, results from references are displayed in context with relevant experimental details and are always traceable to their source publication. Polbase is connected to other resources, including PubMed, UniProt and the RCSB Protein Data Bank, to provide multi-faceted views of polymerase knowledge. In addition to a simple web interface, Polbase data is exposed for custom analysis by external software. | dna polymerase repository, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: PubMed is related to: UniProt has parent organization: New England Biolabs |
Small Business Innovation Research ; NIGMS 1R44GM087021 |
PMID:21993301 | Free, Open unspecified license, Acknowledgement required | biotools:polbase, nlx_151580 | https://bio.tools/polbase | SCR_006107 | DNA Polymerase Database | 2026-07-31 09:26:22 | 0 |
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