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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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1000 Genomes Project and AWS Resource Report Resource Website 5000+ mentions |
1000 Genomes Project and AWS (RRID:SCR_008801) | 1000 Genomes Project and AWS | data set, data or information resource | A dataset containing the full genomic sequence of 1,700 individuals, freely available for research use. The 1000 Genomes Project is an international research effort coordinated by a consortium of 75 companies and organizations to establish the most detailed catalogue of human genetic variation. The project has grown to 200 terabytes of genomic data including DNA sequenced from more than 1,700 individuals that researchers can now access on AWS for use in disease research free of charge. The dataset containing the full genomic sequence of 1,700 individuals is now available to all via Amazon S3. The data can be found at: http://s3.amazonaws.com/1000genomes The 1000 Genomes Project aims to include the genomes of more than 2,662 individuals from 26 populations around the world, and the NIH will continue to add the remaining genome samples to the data collection this year. Public Data Sets on AWS provide a centralized repository of public data hosted on Amazon Simple Storage Service (Amazon S3). The data can be seamlessly accessed from AWS services such Amazon Elastic Compute Cloud (Amazon EC2) and Amazon Elastic MapReduce (Amazon EMR), which provide organizations with the highly scalable compute resources needed to take advantage of these large data collections. AWS is storing the public data sets at no charge to the community. Researchers pay only for the additional AWS resources they need for further processing or analysis of the data. All 200 TB of the latest 1000 Genomes Project data is available in a publicly available Amazon S3 bucket. You can access the data via simple HTTP requests, or take advantage of the AWS SDKs in languages such as Ruby, Java, Python, .NET and PHP. Researchers can use the Amazon EC2 utility computing service to dive into this data without the usual capital investment required to work with data at this scale. AWS also provides a number of orchestration and automation services to help teams make their research available to others to remix and reuse. Making the data available via a bucket in Amazon S3 also means that customers can crunch the information using Hadoop via Amazon Elastic MapReduce, and take advantage of the growing collection of tools for running bioinformatics job flows, such as CloudBurst and Crossbow. | genomic data, genome, cloud computing, cloud, human, gene, genetic variation, research, dna |
is used by: HmtVar is related to: Broad Institute Genomics Platform has parent organization: Amazon Web Services |
nlx_144340 | SCR_008801 | 1000 Genomes Project and Amazon Web Services, 000 Genomes Project Amazon Web Services, 1000 Genomes Project AWS | 2026-07-31 09:26:54 | 7075 | ||||||||
|
Amazon Web Services Resource Report Resource Website 50+ mentions |
Amazon Web Services (RRID:SCR_012854) | AWS | computational hosting, service resource | IT infrastructure services for businesses in the form of web services, now commonly known as cloud computing. This highly reliable, scalable, low-cost infrastructure platform in the cloud powers hundreds of thousands of businesses. With data center locations in the U.S., Europe, Singapore, and Japan, customers across all industries are taking advantage of the following benefits: * Low cost * Agility and Instant Elasticity * Open and Flexible * Secure | cloud computing, cloud, web service |
is listed by: OMICtools is related to: Mercury is related to: PathSeq is parent organization of: NITRC Computational Environment is parent organization of: Amazon Web Services Public Data Sets is parent organization of: 1000 Genomes Project and AWS |
OMICS_01201, nlx_144341 | SCR_012854 | 2026-07-30 09:28:51 | 76 | |||||||||
|
Broad Institute Genomics Platform Resource Report Resource Website |
Broad Institute Genomics Platform (RRID:SCR_027987) | core facility, service resource, access service resource | Facility that generates, analyzes, and interprets high-throughput genomic data to understand the genetic basis of disease. Genomics Platform has played leadership role in the design, data generation, and methods development in support of major genomic resource projects.Through the Broad Clinical Labs (BCL), formerly known as the Clinical Research Sequencing Platform (CRSP), it supports clinical trials, diagnostic testing, and major initiatives, including COVID-19 testing. Offers services including Nucleic Acid Extractions, Single Cell Sequencing (using 10x Genomics products), and GWAS Arrays. | ABRF, generate, analyze, high-throughput genomic data, data generation, methods development, |
is related to: 1000 Genomes Project and AWS is related to: All of Us is related to: The Cancer Genome Atlas is related to: ENCODE is related to: Genome Aggregation Database is related to: Human Cell Atlas is related to: Human Microbiome Project is related to: International HapMap Project is related to: Trans-Omics for Precision Medicine (TOPMed) Program has parent organization: Broad Institute |
Open | SCR_027987 | Broad Institute Genomics Platform Core Facility | 2026-07-30 09:32:50 | 0 | |||||||||
|
HmtVar Resource Report Resource Website 10+ mentions |
HmtVar (RRID:SCR_017288) | data or information resource, database, service resource | Manually curated database offering variability and pathogenicity information about mtDNA variants. Human mitochondrial variants data of healthy and diseased subjects.Data and text mining pipeline to annotate human mitochondrial variants with functional and clinical information. | manually, curated, data, variability, mitochondria, pathogenicity, mtDNA, variant, human, bio.tools |
uses: HmtDB - Human Mitochondrial DataBase uses: 1000 Genomes Project and AWS uses: MITOMAP - A human mitochondrial genome database uses: MutPred uses: SNPsandGO is listed by: Debian is listed by: bio.tools is affiliated with: University of Bologna; Bologna; Italy has parent organization: University of Bari; Bari; Italy |
Rosa Maria Massari fellowship from the Italian Association for Cancer Research ; DHOMOS Worldwide Cancer Research ; DISCO TRIP ; Italian Ministry of Health |
PMID:30371888 PMID:31821723 |
Free, Freely available | biotools:HmtVar | https://bio.tools/HmtVar | SCR_017288 | 2026-07-30 09:30:08 | 10 |
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