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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Efficient Mixed-Model Association
 
Resource Report
Resource Website
50+ mentions 		Efficient Mixed-Model Association (RRID:SCR_008217) EMMA algorithm resource, software resource Statistical test for model organisms association mapping correcting for the confounding from population structure and genetic relatedness. EMMA takes advantage of the specific nature of the optimization problem in applying mixed models for association mapping, which substantially increases the computational speed and the reliability of the results. The current implementation of EMMA is available in an R package. The documentation is included in the installation package. algorithm, organism statistical model, association mapping, r package is listed by: 3DVC
has parent organization: University of California at Los Angeles; California; USA 		PMID:18385116 Available for download nif-0000-21753 SCR_008217 Efficient Mixed-Model Association (EMMA), Efficient Mixed Model Association 2026-08-02 09:05:27 59
University of California at Los Angeles; California; USA
 
Resource Report
Resource Website
10+ mentions 		University of California at Los Angeles; California; USA (RRID:SCR_011620) UCLA university Public research university in Los Angeles. It became Southern Branch of University of California in 1919, making it fourth-oldest of 10-campus University of California system and oldest of campuses in Southern California. uses: GitLab
is listed by: Brain Architecture Project
is listed by: DataCite
is affiliated with: Diabetes Research Centers
is related to: Alzheimers Disease Genetics Consortium
is related to: International AMD Genetics Consortium
is related to: Beta Cell Biology Consortium
is related to: Clinical and Translational Science Awards Consortium
is related to: Structure Harvester
has parent organization: University of California; California; USA
is parent organization of: Alternative Splicing Annotation Project II Database
is parent organization of: Molecular Imaging Probes
is parent organization of: forqs
is parent organization of: GraphIBD
is parent organization of: ADMIXTURE
is parent organization of: GLiMMPS
is parent organization of: University of California at Los Angeles, School of Medicine: Neuro Imaging Lab of Thompson
is parent organization of: www.brainmapping.org
is parent organization of: MultiTracer
is parent organization of: Mouse HapMap Imputation Genotype Resource
is parent organization of: Segmentation Validation Engine
is parent organization of: CVXOPT - Python Software for Convex Optimization
is parent organization of: Database of Interacting Proteins (DIP)
is parent organization of: ResearchMaps
is parent organization of: ProLinks Database of Functional Linkages
is parent organization of: Weighted Gene Co-expression Network Analysis
is parent organization of: Statistics Online Computational Resource
is parent organization of: ASAP: the Alternative Splicing Annotation Project
is parent organization of: RETICULUM - Neuroscience History Resources
is parent organization of: Human Brain and Spinal Fluid Resource Center
is parent organization of: Brain Research Institute
is parent organization of: MATRICS - Measurement And Treatment Research to Improve Cognition in Schizophrenia
is parent organization of: Brain Test
is parent organization of: NINDS/UCLA Repository for Parkinson's Disease Mouse Models
is parent organization of: Salamons Neuroanatomy and Neurovasculature Web-Atlas Resource
is parent organization of: The HIV Positive Selection Mutation Database
is parent organization of: International Consortium of Brain Mapping DTI-81 Atlas
is parent organization of: Efficient Mixed-Model Association
is parent organization of: FMRIpower
is parent organization of: EMINIM
is parent organization of: HARSH
is parent organization of: David Geffen School of Medicine at UCLA; California; USA
is parent organization of: Algal Functional Annotation Tool
is parent organization of: University of California at Los Angeles Translational Pathology Core Facility
is parent organization of: UCLA Clinical and Translational Research Laboratory
is parent organization of: University of California Los Angeles Technology Center for Genomics and Bioinformatics Core Facility
is parent organization of: UCLA High-Throughput Clinical Proteomics Core
is parent organization of: UCLA Immunogenetics Center
is parent organization of: UCLA Nanoelectronics Research Facility
is parent organization of: University of California Los Angeles GenoSeq Core Facility
is parent organization of: University of California Los Angeles Labs and Facilities
is parent organization of: Neurotrophic Lab
is parent organization of: Rank Rank Hypergeometric Overlap
is parent organization of: Breakway
is parent organization of: Research Network in Early Experience and Brain Development
is parent organization of: BIRN Coordinating Center
is parent organization of: Los Angeles Family and Neighborhood Survey
is parent organization of: LONI Debabeler
is parent organization of: LONI Pipeline Processing Environment
is parent organization of: University of Southern California LONI Software
is parent organization of: BS Seeker
is parent organization of: Time Series analyzer
is parent organization of: wMICA
is parent organization of: Drosphila Brain Lineage Atlas
is parent organization of: JWatcher
is parent organization of: Telescope
is parent organization of: SAVES
is parent organization of: UCLA Diffraction Anisotropy Server
is parent organization of: University of California at Los Angeles Lipidomics Lab Core Facility
is parent organization of: Bs-Seeker2
is parent organization of: Mononucleotide Repeat Frameshift Portal
is parent organization of: MicroED tools
is parent organization of: UCLA Miniscope project
is parent organization of: CerebraLux
is parent organization of: University of California at Los Angeles California NanoSystems Institute Advanced Light Microscopy and Spectroscopy Core Facility
is parent organization of: University of California at Los Angeles California NanoSystems Institute Integrated NanoMaterials Laboratory Core Facility
is parent organization of: University of California at Los Angeles California NanoSystems Institute Nano and Pico Characterization Laboratory Core Facility
is parent organization of: University of California at Los Angeles California NanoSystems Institute Electron Imaging Center for Nanomachines Core Facility
is parent organization of: University of Califorania at Los Angeles California NanoSystems Institute Molecular Screening Shared Resource Core Facility
is parent organization of: University of California Los Angeles Broad Stem Cell Research Center Microscopy Core Facility
is parent organization of: University of California Los Angeles Nanolab Core Facility 		Wikidata:Q174710, grid.19006.3e, Crossref funder ID:100007185, nlx_96464, SCR_017627, ISNI:0000 0000 9632 6718 https://ror.org/046rm7j60, https://api.datacite.org/dois?prefix=10.5068 SCR_011620 University of California Los Angeles, UC Los Angeles, University of California at Los Angeles, University of California Los Angeles; California; USA 2026-08-01 12:04:30 20
3DVC
 
Resource Report
Resource Website 		3DVC (RRID:SCR_001377) 3DVC community building portal, data or information resource, portal THIS RESOURCE IS NO LONGER IN SERVICE, confirmed by curator 11/21/2018; Community of researchers attempting to build a comprehensive virtual cell model. The 3DVC will do for cell biology what the Large Hadron Collider (LHC) does for particle physics, but through a virtual rather than physical resource. It will bring together collaborators around a shared infrastructure to advance the field through efficient groundbreaking science and technology, the results of which will be broadly disseminated to an audience ranging from K12 to professionals. The 3DVC is committed to open science, yet strives for sustainability through new business models that leverages that open content. cell, model, biological structure, molecule lists: Albinism database
lists: ButterflyBase
lists: G2P Knowledge Centre
lists: Bio-Job.org
lists: RettBASE: IRSF MECP2 Variation Database
lists: Resource for Biocomputing Visualization and Informatics
lists: National Center for Integrative Biomedical Informatics
lists: Genome Network Platform
lists: NeuroExplorer
lists: Open Provenance Model
lists: BarleyBase
lists: BioModels
lists: Arabidopsis Reactome
lists: MEDLINE
lists: bioDBcore
lists: GermOnline
lists: GlycoMapsDB
lists: SNPHunter
lists: Allen Institute for Brain Science Sleep Study
lists: Coddle-Codons Optimized to Discover Deleterious LEsions
lists: MicroArray and Gene Expression Markup Language
lists: Fungal Genome Initiative
lists: EMDataResource.org
lists: University of Southern California LONI Software
lists: Ontology Development and Information Extraction
lists: Software Distribution Sets
lists: L-Measure
lists: UCSF Chimera
lists: Zebrafish Neurophenome Project Database
lists: Standards-based Infrastructure with Distributed Resources
lists: HapMap 3 and ENCODE 3
lists: NCBI BioProject
lists: SEQanswers Wiki
lists: NIF Data Federation
lists: SMD
lists: SoyBase
lists: modelcrop.org
lists: BiGG Database
lists: FSST - Functional Similarity Search Tool
lists: LHP LHDL
lists: Open Provenance Model Vocabulary
lists: DiseaseMeth
lists: neuroVIISAS
lists: Predictive Networks
lists: SitEx
lists: NRCAM
lists: DisGeNET
lists: MCMBB
lists: BARD
lists: Mouse Genome Informatics (MGI)
lists: European Nucleotide Archive (ENA)
lists: Comparative Toxicogenomics Database (CTD)
lists: PomBase
lists: Stanford University HIV Drug Resistance Database
lists: Database of Chemical Compounds and Reactions in Biological Pathways
lists: UCSD-Nature Signaling Gateway Molecule Pages
lists: IntAct
lists: The WWW Virtual Library: Model Organisms
lists: Helicobacter Pylori Database of Protein Interactomes
lists: Genes to Cognition: Neuroscience Research Programme
lists: neuroConstruct
lists: ModelDB
lists: 3DViewnix
lists: TMRPres2D
lists: Ikaros Project
lists: Dockground: Benchmarks, Docoys, Templates, and other knowledge resources for DOCKING
lists: Interagency Modeling and Analysis Group
lists: Annozilla (Annotea on Mozilla)
lists: Artificial Selected Proteins/Peptides Database
lists: Cancer Chromosomes
lists: CATMA - Complete Arabidopsis Transcriptome MicroArray
lists: Combinatorial Extension (CE)
lists: ChemDB: The UC Irvine ChemDB
lists: CluSTr
lists: CTDatabase
lists: DRC - Database of Ribosomal Crosslinks
lists: Gene Expression in Tooth Database
lists: GenoBase
lists: GPX-Macrophage
lists: Hetero-compound Information Centre- Uppsala
lists: IMG
lists: InSatDb
lists: InterDom
lists: IPD-HPA - Human Platelet Antigens
lists: Max Planck Unified Proteome Database
lists: Molecular Modelling DataBase
lists: MegaMotifbase
lists: Metalloprotein Site Database
lists: MitoDat - Mendelian Inheritance and the Mitochondrion
lists: Madison Metabolomics Consortium Database
lists: Olfactory Receptor DataBase
lists: SUPERFAMILY
lists: EyeBrowse
lists: Allen Institute Mouse Diversity Study
lists: BIRD - Bio Info R and D
lists: Bioinformatics Links Directory
lists: Electroencephalogram Database: Prediction of Epileptic Seizures
lists: Human Protein-Protein Interaction Mining Tool
lists: Interagency Modeling and Analysis Group and Multi-scale Modeling Consortium Wiki
lists: Systems Biology Workbench
lists: CellML
lists: MathML
lists: AraCyc
lists: Biochemical Pathways database
lists: CellML Model Repository
lists: Cytokine Family Database
lists: Bacterial Genomes
lists: U.S. Pig Genome Project
lists: ComBase: A Combined Database For Predictive Microbiology
lists: GeneWindow
lists: Comprehensive Systems-Biology Database
lists: Candidate Genes to Inherited Diseases
lists: MeGX
lists: Mammalian Phosphorylation Resource
lists: Efficient Mixed-Model Association
lists: Proteome Analyst PA-GOSUB
lists: PubCrawler
lists: Conical: The Computational Neuroscience Class Library
lists: Gene Expression Profile Analysis Suite
lists: Adaptive Poisson-Boltzmann Solver
lists: Aggrescan: The Hot Spot Finder
lists: Distributed Annotation System
lists: COILS: Prediction of Coiled Coil Regions in Proteins
lists: DNAWorks at Helix Systems
lists: Microarray DB
lists: Gene Relationships Across Implicated Loci
lists: SEQtools
lists: DeRisi Lab
lists: Protein Subcellular Location Image Database
lists: Open Information Integration
lists: Metagenomics Program at JGI
lists: BrainPeps
lists: EGAN: Exploratory Gene Association Networks
lists: CBioC
lists: OrChem
lists: Generic GO Term Finder
lists: G-node portal electrophysiology data sharing
lists: LegumeIP
lists: Roadmap Epigenomics Project
lists: TrakEM2
lists: ATID: Alternative Translational Initiation Database
lists: linked life data - a semantic data integration platform for the biomedical domain
lists: Crux tandem mass spectrometry analysis software
lists: CellProfiler Analyst
lists: Scirus - for scientific information only
lists: SRS
lists: KEGG
lists: Antibodypedia
lists: SWISS-MODEL Repository
lists: BTKbase
lists: ExTopoDB
lists: MINAS - Metal Ions in Nucleic AcidS
lists: Tripod
lists: NIH electronic Research Materials catalogue
lists: Alliance for Cellular Signaling Molecule Pages Database
lists: Death Domain database
lists: Cube-DB
lists: OntoQuest
lists: EASE: the Expression Analysis Systematic Explorer
lists: Greglist
lists: Chloroplast Genome Database
lists: Montage RTS2000
lists: BGI-RISe - Beijing Genomics Institute Rice Information System
lists: ApiDB CryptoDB
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: AutDB
lists: DAVID
lists: Dataverse Network Project
lists: Binding MOAD
lists: Biological Magnetic Resonance Data Bank (BMRB)
lists: RNAhybrid
lists: RegulonDB
lists: Artemis: Genome Browser and Annotation Tool
lists: Genomedata
lists: CATSS - Child and Adolescent Twin Study in Sweden
lists: Viking Viewer for Connectomics
lists: SpliceDB
lists: Galaxy
lists: SPM
lists: Hyper Cell Line Database
lists: MeGX
has parent organization: University of California at San Diego; California; USA 		NSF 1216893 THIS RESOURCE IS NO LONGER IN SERVICE nlx_152536 http://www.3dvcell.org/conference-toward-3d-virtual-cell SCR_001377 3D Virtual Cell 2026-08-03 09:31:18 0

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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web.  We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.

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