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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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CAP3 Sequence Assembly Program Resource Report Resource Website 500+ mentions |
CAP3 Sequence Assembly Program (RRID:SCR_007250) | topical portal, data or information resource, portal | This form allows you to assemble a set of contiguous sequences (contigs) with the CAP3 program. The CAP3 program has a capability to clip 5'' and 3'' low-quality regions of reads. It uses base quality values in computation of overlaps between reads, construction of multiple sequence alignments of reads, and generation of consensus sequences. The program also uses forward-reverse constraints to correct assembly errors and link contigs. Results of CAP3 on four BAC data sets are presented. The performance of CAP3 was compared with that of PHRAP on a number of BAC data sets. PHRAP often produces longer contigs than CAP3 whereas CAP3 often produces fewer errors in consensus sequences than PHRAP. It is easier to construct scaffolds with CAP3 than with PHRAP on low-pass data with forward-reverse constraints. Sponsors: This project was supported by NIH Grant R01HG01502-02 from NHGRI. Keywords: CAP3, Program, Form, Computation, DNA, Dataset, Database, Program,, THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | FASEB list | has parent organization: Iowa State University; Iowa; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30233 | SCR_007250 | CAP3 | 2026-08-01 12:03:26 | 781 | ||||||||
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Iowa State University; Iowa; USA Resource Report Resource Website 1+ mentions |
Iowa State University; Iowa; USA (RRID:SCR_000972) | ISU | university | Iowa State University (ISU) is an undergraduate, graduate and research institute. ISU has 100 majors and upwards of 800 student organizations. | university, institution, undergraduate, graduate, research |
is parent organization of: Animal QTLdb is parent organization of: Arabidopsis thaliana Genome Database is parent organization of: BarleyBase is parent organization of: Iowa State University Neuroscience Program is parent organization of: SoyBase is parent organization of: FuncExpression is parent organization of: Zinc Finger Consortium Database is parent organization of: NAGRP Bioinformatics Coordination Program is parent organization of: PLEXdb - Plant Expression Database is parent organization of: CAP3 Sequence Assembly Program is parent organization of: PIDD is parent organization of: Metabolic Network Exchange is parent organization of: ChickBase is parent organization of: Picky is parent organization of: Iowa State University Labs and Facilities is parent organization of: Iowa State University SIPERG Stable Isotope Lab Core Facility is parent organization of: Genetic Analysis Software is parent organization of: Iowa State University Hybridoma Core Facility is parent organization of: Iowa State University W.M. Keck Metabolomics Research Laboratory Core Facility |
nlx_75450, Wikidata:Q1136919, Crossref funder ID:100009227, grid.34421.30, ISNI:0000 0004 1936 7312 | https://ror.org/04rswrd78 | SCR_000972 | Iowa State University, Iowa State University (ISU) | 2026-08-01 12:01:28 | 2 |
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