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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
ENCODE
 
Resource Report
Resource Website
1000+ mentions
ENCODE (RRID:SCR_006793) data repository, production service resource, data analysis service, service resource, database, storage service resource, analysis service resource, data or information resource Encyclopedia of DNA elements consisting of list of functional elements in human genome, including elements that act at protein and RNA levels, and regulatory elements that control cells and circumstances in which gene is active. Enables scientific and medical communities to interpret role of human genome in biology and disease. Provides identification of common cell types to facilitate integrative analysis and new experimental technologies based on high-throughput sequencing. Genome Browser containing ENCODE and Epigenomics Roadmap data. Data are available for entire human genome. Encyclopedia, DNA, element, functional, human, genome, protein, RNA, level, regulatory, gene, active, disease, analysis uses: Segway - a way to segment the genome
is used by: BioSample Database at EBI
is used by: VizHub
is used by: GEMINI
is used by: Deep Blue Epigenomic Data Server
is recommended by: National Library of Medicine
is listed by: OMICtools
is affiliated with: GENCODE
is related to: Factorbook
is related to: UCSC Genome Browser
is related to: modENCODE
is related to: UCSC Genome Browser
is related to: Encode
is related to: Broad Institute Genomics Platform
has parent organization: University of California at Santa Cruz; California; USA
NHGRI PMID:21526222 Free, Freely available nif-0000-02797, r3d100013051, SCR_017493, OMICS_00532 http://encodeproject.org/ENCODE/, https://www.genome.gov/Funded-Programs-Projects/ENCODE-Project-ENCyclopedia-Of-DNA-Elements, https://www.encodeproject.org/, https://doi.org/10.17616/R31NJMKB SCR_006793 ENCODE - Encyclopedia of DNA Elements, ENCODE + Epigenomics Roadmap Combined Data Browser, Encyclopedia of DNA Elements, Encyclopedia of DNA Elements (ENCODE) 2026-08-03 09:33:10 3681

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