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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
UCSC Genome Browser
 
Resource Report
Resource Website
10000+ mentions
Rating or validation data
UCSC Genome Browser (RRID:SCR_005780) project portal, data or information resource, portal, database, service resource Portal to interactively visualize genomic data. Provides reference sequences and working draft assemblies for collection of genomes and access to ENCODE and Neanderthal projects. Includes collection of vertebrate and model organism assemblies and annotations, along with suite of tools for viewing, analyzing and downloading data. Reference, sequence, assembly, collection, genome, visualize, genomic, data, ENCODE, Neanderthal, project, sequencing is used by: VizHub
is used by: Blueprint Epigenome
is used by: QmRLFS-finder
is used by: International Human Epigenome Consortium Data Portal
is used by: iPiG
is listed by: re3data.org
is listed by: OMICtools
is listed by: Educational Resources in Neuroscience
is listed by: SoftCite
is related to: HEXEvent
is related to: PicTar
is related to: Phenotree
is related to: Enhancer Trap Line Browser
is related to: CistromeFinder
is related to: ENCODE
is related to: Human Epigenome Atlas
is related to: ENCODE
is related to: BigWig and BigBed
is related to: PhenCode
is related to: doRiNA
is related to: ISCA Consortium
is related to: WashU Epigenome Browser
is related to: CRISPOR
is related to: liftOver
is related to: kent
has parent organization: University of California at Santa Cruz; California; USA
works with: TarBase
works with: bedGraphToBigWig
UC BIOTEuropean UnionH ;
Alfred P. Sloan Foundation ;
David and Lucille Packard Foundation ;
NIH ;
HHMI ;
CISI ;
NHGRI ;
DOE ;
NSF DBI 9809007;
NIGMS GM52848
PMID:12045153
PMID:22908213
PMID:23155063
OMICS_00926, SCR_017502, nif-0000-03603, SciEx_217, SCR_012479, r3d100010243 http://genome.cse.ucsc.edu, https://doi.org/10.17616/R3RK5C SCR_005780 The Human Genome Browser at UCSC, UCSC Genome Browser Group, University of California at Santa Cruz Genome Browser, UCSC Genome Bioinformatics 2026-08-01 12:02:59 10026

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