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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
GenomeNet Resource Report Resource Website 500+ mentions |
GenomeNet (RRID:SCR_004165) | organization portal, data or information resource, database, portal, computation service resource | GenomeNet is a Japanese network of database and computational services for genome research and related research areas in biomedical sciences, operated by the Kyoto University Bioinformatics Center. GenomeNet was established in September 1991 under the Human Genome Program of the then Ministry of Education, Science and Culture (Monbusho). The GenomeNet service has been developed by the Kanehisa Laboratory in Kyoto University as part of the research projects. GenomeNet is operated using the Supercomputer System of the Institute for Chemical Research, Kyoto University. LinkDB is supported by the National Bioscience Database Center of the Japan Science and Technology Agency. | FASEB list |
lists: DINIES has parent organization: Kyoto University; Kyoto; Japan is parent organization of: Amino Acid Index Database |
nlx_18770 | SCR_004165 | 2026-08-02 09:03:53 | 977 | ||||||||||
|
Kyoto University; Kyoto; Japan Resource Report Resource Website |
Kyoto University; Kyoto; Japan (RRID:SCR_004108) | Kyodai | university | National university in Kyoto, Japan. It is the second oldest Japanese university, one of Asia highest ranked universities and one of Japan National Seven Universities. |
is parent organization of: Kyoto Encyclopedia of Genes and Genomes Expression Database is parent organization of: GenomeNet is parent organization of: GLIDA : GPCR-Ligand Database is parent organization of: ODB - Operon database is parent organization of: KEGG is parent organization of: National Bio Resource Project for the Rat. is parent organization of: BSORF - Bacillus Subtilis Genome Database is parent organization of: DINIES is parent organization of: NBRP Medaka Pattern Match is parent organization of: CNACS |
Wikidata:Q336264, grid.258799.8, ISNI:0000 0004 0372 2033, nlx_60798, Crossref funder ID:501100005683 | https://ror.org/02kpeqv85 | SCR_004108 | 2026-08-01 12:02:31 | 0 | |||||||||
|
DINIES Resource Report Resource Website 1+ mentions |
DINIES (RRID:SCR_016505) | DINIES | web application, software resource, data processing software, sequence analysis software, software application, data analysis software | Web server for predicting unknown drug-target interaction networks from various types of biological data in the framework of supervised network inference. | predict, drug, target, interaction, network, biological, data, chemical, structure, protein, amino acid, sequence, domain, bio.tools |
is listed by: GenomeNet is listed by: Debian is listed by: bio.tools is related to: KEGG has parent organization: Kyoto University; Kyoto; Japan |
Ministry of Education ; Culture ; Sports ; Science and Technology of Japan ; the Japan Science and Technology Agency ; the Japan Society for the Promotion of Science |
PMID:24838565 | Free, Freely available | biotools:dinies | https://bio.tools/dinies | SCR_016505 | Drug target Interaction Network Inference Engine based on Supervised analysis | 2026-08-02 09:07:24 | 4 | ||||
|
Amino Acid Index Database Resource Report Resource Website 100+ mentions |
Amino Acid Index Database (RRID:SCR_007044) | database, data or information resource | AAindex is a database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs of amino acids. AAindex consists of three sections now: AAindex1 for the amino acid index of 20 numerical values, AAindex2 for the amino acid mutation matrix and AAindex3 for the statistical protein contact potentials. All data are derived from published literature. An amino acid index is a set of 20 numerical values representing any of the different physicochemical and biological properties of amino acids. The AAindex1 section of the Amino Acid Index Database is a collection of published indices together with the result of cluster analysis using the correlation coefficient as the distance between two indices. This section currently contains 544 indices. Another important feature of amino acids that can be represented numerically is the similarity between amino acids. Thus, a similarity matrix, also called a mutation matrix, is a set of 210 numerical values, 20 diagonal and 20x19/2 off-diagonal elements, used for sequence alignments and similarity searches. The AAindex2 section of the Amino Acid Index Database is a collection of published amino acid mutation matrices together with the result of cluster analysis. This section currently contains 94 matrices. In the release 9.0, we added a collection of published protein pairwise contact potentials to AAindex as AAindex3. This section currently contains 47 contact potential matrices. Sponsors: This work was supported by grants and resources from the Ministry of Education, Culture, Sports, Science and Technology, and the Japan Science and Technology Agency, and the Bioinformatics Center, Institute for Chemical Research, Kyoto University and the Super Computer System, Human Genome Center, Institute of Medical Science, University of Tokyo. | amino acid, biochemical property, mutation, physicochemical property, protein sequence, proteomics, FASEB list | has parent organization: GenomeNet | PMID:3244698 PMID:9053899 PMID:9847231 PMID:10592278 |
nif-0000-02527 | SCR_007044 | AAindex | 2026-08-02 09:05:01 | 205 |
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