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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
DTU Center for Biological Sequence Analysis Resource Report Resource Website 1000+ mentions |
DTU Center for Biological Sequence Analysis (RRID:SCR_003590) | CBS, DTU CBS | software resource, data access protocol, service resource, production service resource, web service, analysis service resource | Center for Biological Sequence Analysis of the Technical University of Denmark conducts basic research in the field of bioinformatics and systems biology and directs its research primarily towards topics related to the elucidation of the functional aspects of complex biological mechanisms. A large number of computational methods have been produced, which are offered to others via WWW servers. Several data sets are also available. The center also has experimental efforts in gene expression analysis using DNA chips and data generation in relation to the physical and structural properties of DNA. The on-line prediction services at CBS are available as interactive input forms. Most of the servers are also available as stand-alone software packages with the same functionality. In addition, for some servers, programmatic access is provided in the form of SOAP-based Web Services. The center also educates engineering students in biotechnology and systems biology and offers a wide range of courses in bioinformatics, systems biology, human health, microbiology and nutrigenomics. | nucleotide, sequence, amino acid, dna, microarray, molecule, immunology, protein function, protein structure, protein, post-translational, whole genome, sequence analysis |
has parent organization: Technical University of Denmark; Lyngby; Denmark is parent organization of: NESbase is parent organization of: O-GLYCBASE is parent organization of: OligoWiz is parent organization of: SignalP |
Danish National Research Foundation ; Danish Research Councils ; Danish Center for Scientific Computing ; Villum Kann Rasmussen Foundation ; Novo Nordisk Foundation ; European Union ; NIH |
nlx_12329 | http://www.cbs.dtu.dk/index.shtml | SCR_003590 | 2026-08-06 09:25:56 | 1434 | |||||||
|
Technical University of Denmark; Lyngby; Denmark Resource Report Resource Website |
Technical University of Denmark; Lyngby; Denmark (RRID:SCR_011559) | DTU | university, institution | Engineering institution in Kongens Lyngby, north of Copenhagen, Denmark. It was founded in 1829 as first polytechnic in Denmark. | engineering, institution, Denmark, polytechnic |
is related to: European Lead Factory is related to: READNA is related to: Open PHACTS is parent organization of: DTU Multi-Assay Core is parent organization of: THOR Center for Neuroinformatics is parent organization of: Brede Wiki is parent organization of: GeneWiz browser is parent organization of: CBS Prediction Servers is parent organization of: Brede Database is parent organization of: DTU Center for Biological Sequence Analysis is parent organization of: BLASTatlas - Mapping of whole genome homology is parent organization of: ERPwavelab is parent organization of: Comstat is parent organization of: Sequenza is parent organization of: RNAmmer is parent organization of: NetPhos is parent organization of: BepiPred-2.0 is parent organization of: TargetP |
nlx_14187 | SCR_011559 | Danmarks Tekniske Universitet | 2026-08-06 09:27:45 | 0 | ||||||||
|
SignalP Resource Report Resource Website 5000+ mentions |
SignalP (RRID:SCR_015644) | web application, software resource | Web application for prediction of the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms. The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction based on a combination of several artificial neural networks. | prediction, signal peptide, cleavage site, amino acid, sequence, artificial neural network |
is listed by: SoftCite has parent organization: DTU Center for Biological Sequence Analysis |
PMID:28451972 | Freely available, Acknowledgment requested, Free, Available for download, Runs on Windows, Runs on Mac OS | SCR_015644 | 2026-08-06 09:28:40 | 9406 | |||||||||
|
NESbase Resource Report Resource Website 1+ mentions |
NESbase (RRID:SCR_003268) | NESbase | storage service resource, service resource, data repository, data or information resource, database | Database of proteins in which the presence of Leucine-rich nuclear export signal (NES) has been experimentally verified. It is curated from literature. Each NESbase entry contains information of whether NES was shown to be necessary and/or sufficient for export, and whether the export was shown to be mediated by the export receptor CRM1. The compiled information was used to make a sequence logo of the Leucine-rich NESs, displaying the conservation of amino acids within a window of 25 residues. Error reports and submissions of new data are most welcome! | nuclear export signal, protein, leucine | has parent organization: DTU Center for Biological Sequence Analysis | Danish National Research Foundation ; John and Birthe Meyer Foundation |
PMID:12520031 | Free, Available for download, Freely available | nif-0000-03188 | https://services.healthtech.dtu.dk/datasets/NESbase-1.0/ | SCR_003268 | 2026-08-06 09:25:50 | 7 | |||||
|
O-GLYCBASE Resource Report Resource Website 10+ mentions |
O-GLYCBASE (RRID:SCR_003288) | O-GlycBase | storage service resource, service resource, data repository, data or information resource, database | Revised database of O- and C-glycosylated proteins. The criteria for inclusion are at least one experimentally verified O- or C-glycosylation site. Each entry contains information about the glycan involved, the species, sequence, a literature reference and http-linked cross-references to other databases. Version 6.00 has 242 glycoprotein entries. The terminal sugar linked to serine or threonine is cited when known. The database is non-redundant in the sense that it contains no identical sequences, unless there is conflicting glycosylation data. Mucins have tandem repeat sequences, which are O-glycosylated. This result in some redundancy of the O-glycosylation sites. For prediction purposes they have also included a version of the database which contains no identical O-glycosylation sites (window=9) called O-Unique.seq. Data can no longer be retrieved by anonymous ftp. Only http is supported. New data, comments and suggestions are welcome. | glycosylated protein, glycoprotein, serine, threonine, o-glycosylation site, c-glycosylation site, carbohydrate, o-glycan, asparagine, glycosylation, glycan | has parent organization: DTU Center for Biological Sequence Analysis | PMID:9847232 | Free, Freely available | nif-0000-03209 | http://www.cbs.dtu.dk/databases/OGLYCBASE/ | SCR_003288 | 2026-08-06 09:25:51 | 12 | ||||||
|
OligoWiz Resource Report Resource Website 10+ mentions |
OligoWiz (RRID:SCR_012966) | OligoWiz | software resource, service resource, production service resource, data analysis service, analysis service resource | Software and server that performs intelligent design of oligonucleotides for DNA microarrays. |
is listed by: OMICtools has parent organization: DTU Center for Biological Sequence Analysis |
PMID:18007603 PMID:15980547 |
OMICS_00831 | SCR_012966 | 2026-08-06 09:28:02 | 10 |
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