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http://mapman.gabipd.org/web/guest/mapman
Software tool that displays large genomics datasets (e.g. gene expression data from Arabidopsis Affymetrix arrays) onto diagrams of metabolic pathways or other biological processes.
Proper citation: MapMan (RRID:SCR_003543) Copy
http://www.mpimp-golm.mpg.de/2168/en
German research institute for molecular plant physiology, based in the Golm district of Potsdam, Brandenburg.
Proper citation: Max Planck Institute of Molecular Plant Physiology; Golm; Germany (RRID:SCR_011368) Copy
An open web-accessible resource for gene functional annotations in the plant sciences to facilitate improvement, consolidation and visualization of gene annotations across several plant species. It is based on the MapMan ontology, organized in the form of a hierarchical tree of biological concepts, which describe gene functions. Currently, genes of the model species Arabidopsis, potato, tomato, rice, and tobacco are included. The main features are (i) dynamic and interactive gene product annotation through various curation options; (ii) consolidation of gene annotations for different plant species through the integration of orthologue group information; (iii) traceability of gene ontology changes and annotations; (iv) integration of external knowledge about genes from different public resources; and (v) providing gathered information to high-throughput analysis tools via dynamically generated export files. All of the GoMapMan functionalities are openly available, with the restriction on the curation functions, which require prior registration to ensure traceability of the implemented changes.
Proper citation: GoMapMan (RRID:SCR_005060) Copy
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