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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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MRC Laboratory of Molecular Biology Resource Report Resource Website 100+ mentions |
MRC Laboratory of Molecular Biology (RRID:SCR_003527) | LMB | institution | The MRC Laboratory of Molecular Biology (LMB) has long been, and remains, a world-class research laboratory. Our primary goal is to understand biological processes at the molecular level, through the application of methods drawn from physics, chemistry and genetics. This quest extends from structural studies of individual macromolecules, through their interactions and beyond to the functioning of subcellular systems, cells and multicellular systems in whole organisms, with the ultimate aim of using this knowledge to tackle specific problems in human health and disease. The LMB is one of the birthplaces of modern molecular biology. Many techniques were pioneered at the laboratory, most notably methods for determining the three-dimensional structure of proteins and DNA sequencing. Whole genome sequencing was initiated at the LMB. Another landmark discovery was the invention of monoclonal antibodies. Over the years, the work of LMB scientists has attracted 9 Nobel Prizes, shared between 13 LMB scientists, as well as numerous other prizes and scientific awards. | FASEB list |
is parent organization of: DBD: Transcription factor prediction database is parent organization of: FlyTF.org is parent organization of: SCOP: Structural Classification of Proteins is parent organization of: iMosflm is parent organization of: Coot is parent organization of: AIMLESS is parent organization of: CTFFIND is parent organization of: NeuroAnatomy Toolbox |
MRC | Wikidata: Q185800, nif-0000-38323, grid.42475.30, ISNI: 0000 0004 0605 769X | https://ror.org/00tw3jy02 | SCR_003527 | 2026-08-01 12:02:22 | 441 | |||||||
|
DBD: Transcription factor prediction database Resource Report Resource Website 10+ mentions |
DBD: Transcription factor prediction database (RRID:SCR_002300) | DBD | service resource, database, data or information resource | Database of predicted transcription factors in completely sequenced genomes. The predicted transcription factors all contain assignments to sequence specific DNA-binding domain families. The predictions are based on domain assignments from the SUPERFAMILY and Pfam hidden Markov model libraries. Benchmarks of the transcription factor predictions show they are accurate and have wide coverage on a genomic scale. The DBD consists of predicted transcription factor repertoires for 930 completely sequenced genomes. | predicted transcription factor, transcription factor, dna-binding domain, proteome, sequence, domain family, protein sequence, genome, prediction |
is listed by: OMICtools is related to: SUPERFAMILY is related to: Pfam has parent organization: MRC Laboratory of Molecular Biology |
PMID:18073188 PMID:16381970 |
Acknowledgement requested | nif-0000-02726, OMICS_00531 | SCR_002300 | DNA-binding domain | 2026-08-06 09:25:37 | 10 | ||||||
|
NeuroAnatomy Toolbox Resource Report Resource Website 1+ mentions |
NeuroAnatomy Toolbox (RRID:SCR_017248) | NAT | software resource, data analysis software, 3d visualization software, data processing software, data visualization software, software application | Software R package for 3D visualisation and analysis of biological image data, especially tracings of single neurons. | 3D, visualization, analysis, data, image, single, neuron, tracing |
is listed by: OMICtools is related to: R Project for Statistical Computing has parent organization: MRC Laboratory of Molecular Biology |
Restricted | OMICS_18884 | http://jefferislab.github.io., https://CRAN.R-project.org/package=nat | SCR_017248 | nat, , NeuroAnatomy Toolbox | 2026-08-06 09:29:01 | 4 | ||||||
|
SCOP: Structural Classification of Proteins Resource Report Resource Website 50+ mentions |
SCOP: Structural Classification of Proteins (RRID:SCR_007039) | database, data or information resource | The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationships. Protein domains in SCOP are hierarchically classified into families, superfamilies, folds and classes. The continual accumulation of sequence and structural data allows more rigorous analysis and provides important information for understanding the protein world and its evolutionary repertoire. SCOP participates in a project that aims to rationalize and integrate the data on proteins held in several sequence and structure databases. As part of this project, starting with release 1.63, we have initiated a refinement of the SCOP classification, which introduces a number of changes mostly at the levels below superfamily. The pending SCOP reclassification will be carried out gradually through a number of future releases. In addition to the expanded set of static links to external resources, available at the level of domain entries, we have started modernization of the interface capabilities of SCOP allowing more dynamic links with other databases. | bio.tools, FASEB list |
is listed by: Debian is listed by: bio.tools is related to: IndelFR - Indel Flanking Region Database is related to: SUPFAM is related to: DOMMINO - Database Of MacroMolecular INteractiOns has parent organization: MRC Laboratory of Molecular Biology |
PMID:14681400 | nlx_94704, biotools:scop | https://bio.tools/scop | SCR_007039 | Structural Classification of Proteins database, SCOP database | 2026-08-06 09:26:44 | 98 | |||||||
|
AIMLESS Resource Report Resource Website 500+ mentions |
AIMLESS (RRID:SCR_015747) | software application, data processing software, software resource | Data processing software for x-ray diffraction data. AIMLESS scales together multiple observations of reflections, and merges multiple observations into an average intensity. | xray, differentiation, observation, reflection, scaling, scale | has parent organization: MRC Laboratory of Molecular Biology | PMID:23793146 | Free, Available for download | SCR_015747 | 2026-08-06 09:28:44 | 541 | |||||||||
|
FlyTF.org Resource Report Resource Website 10+ mentions |
FlyTF.org (RRID:SCR_004123) | FlyTF | database, data or information resource | A database of genomic and protein data for Drosophila site-specific transcription factors. | transcription factor, gene, annotation, genome, protein |
is listed by: OMICtools has parent organization: MRC Laboratory of Molecular Biology |
PMID:16613907 | The community can contribute to this resource, Acknowledgement requested | OMICS_00534 | SCR_004123 | FlyTF.org - The Drosophila Transcription Factor Database | 2026-08-06 09:26:04 | 12 | ||||||
|
CTFFIND Resource Report Resource Website 100+ mentions |
CTFFIND (RRID:SCR_016732) | CTFFIND | data analysis software, software application, software resource, data processing software | Software tool for finding CTFs of electron micrographs. Program used for the estimation of objective lens defocus parameters from transmission electron micrographs. The program CTFFIND3 is an updated version of the program CTFFIND2. For micrographs collected on photographic film and scanned in use CTFFIND 3. For images from CCDs or direct detectors use CTFFIND 4. |
is listed by: SoftCite is related to: Janelia Research has parent organization: MRC Laboratory of Molecular Biology |
MRC | PMID:26278980 | SCR_016732 | CTFFinding, CTFFIND4, CTFFIND2, Contrast Transfer Function Finding, Contrast Transfer FunctionFinding, CTFFIND 3 | 2026-08-06 09:28:56 | 109 | ||||||||
|
iMosflm Resource Report Resource Website 100+ mentions |
iMosflm (RRID:SCR_014217) | software application, image processing software, data processing software, software resource | Software which processes diffraction data/images and produces an MTZ file of reflection indices with their intensities, standard deviations, and other parameters. The MTZ file is passed onto other programs of the CCP4 program suite for further data reduction. iMosflm processes data from CCD and pixel detectors. It is available for Windows, Mac OSX and Linux platforms. Tutorials are available at the website. | image processing software, diffraction image, mtz file |
is affiliated with: Pointless has parent organization: MRC Laboratory of Molecular Biology |
SCR_014217 | 2026-08-06 09:28:16 | 326 | |||||||||||
|
Coot Resource Report Resource Website 10000+ mentions |
Coot (RRID:SCR_014222) | COOT | software resource, model, software toolkit, data or information resource, software application, simulation software | Software for macromolecular model building, model completion and validation, and protein modelling using X-ray data. Coot displays maps and models and allows model manipulations such as idealization, rigid-body fitting, ligand search, Ramachandran plots, non-crystallographic symmetry and more. Source code is available. | software toolkit, simulation software, model manipulation, protein modeling, bio.tools |
is used by: PDB-REDO is listed by: bio.tools is listed by: Debian is listed by: SoftCite is related to: MolProbity has parent organization: MRC Laboratory of Molecular Biology |
PMID:15572765 | Available for download, Acknowledgement requested | biotools:coot | http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Coot, https://bio.tools/coot | SCR_014222 | Crystallographic Object-Oriented Toolkit | 2026-08-06 09:28:17 | 14789 |
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