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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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SEED Resource Report Resource Website 500+ mentions |
SEED (RRID:SCR_002129) | SEED | analysis service resource, data analysis service, data or information resource, data set, database, production service resource, service resource | The SEED is a framework to support comparative analysis and annotation of genomes. The cooperative effort focuses on the development of the comparative genomics environment and, more importantly, on the development of curated genomic data. Curation of genomic data (annotation) is done via the curation of subsystems by an expert annotator across many genomes, not on a gene by gene basis. From the curated subsystems we extract a set of freely available protein families (FIGfams). These FIGfams form the core component of our RAST automated annotation technology. Answering numerous requests for automatic Seed-Quality annotations for more or less complete bacterial and archaeal genomes, we have established the free RAST-Server (RAST=Rapid Annotation using Subsytems Technology). Using similar technology, we make the Metagenomics-RAST-Server freely available. We also provide a SEED-Viewer that allows read-only access to the latest curated data sets. We currently have 58 Archaea, 902 Bacteria, 562 Eukaryota, 1254 Plasmids and 1713 Viruses in our database. All tools and datasets that make up the SEED are in the public domain and can be downloaded at ftp://ftp.theseed.org | environmental genome, eukaryal, archaeal, bacterial, viral, FASEB list |
has parent organization: Fellowship for Interpretation of Genomes has parent organization: University of Chicago; Illinois; USA has parent organization: Argonne National Laboratory |
PMID:16214803 | Free, Freely Available | nif-0000-20923 | http://www.theseed.org/wiki/Main_Page | SCR_002129 | The SEED | 2026-08-21 12:36:35 | 512 | |||||
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University of Chicago; Illinois; USA Resource Report Resource Website 1+ mentions |
University of Chicago; Illinois; USA (RRID:SCR_002832) | university | Private research university in Chicago, Illinois. | private university, chicago, degree program |
uses: Research Accelerator is affiliated with: Marine Biological Laboratory is related to: Alzheimers Disease Genetics Consortium is related to: Beta Cell Biology Consortium is related to: Clinical and Translational Science Awards Consortium is related to: Pediatric Cancer Data Commons is parent organization of: Center for EPR Imaging in Vivo Physiology is parent organization of: BioCARS is parent organization of: Diffusion MRI of Traumatic Brain Injury is parent organization of: Primate Orthologous Exon Database is parent organization of: University of Chicago Human Tissue Resource Center Biospecimen Banking is parent organization of: MARTA is parent organization of: SPEED- Searchable Prototype Experimental Evolutionary Database is parent organization of: SCAN is parent organization of: SNPSequer is parent organization of: GELBANK is parent organization of: NMPDR is parent organization of: Early Indicators of Later Work Levels Disease and Death (EI) - Union Army Samples Public Health and Ecological Datasets is parent organization of: National Social Life Health and Aging Project (NSHAP) is parent organization of: UChicago IGSB Next Generation Sequencing Core is parent organization of: Argonne National Laboratory is parent organization of: AnalyzeReplication is parent organization of: University of Chicago Labs and Facilities is parent organization of: Globus is parent organization of: UChicago Flow Cytometry Core Facility is parent organization of: UChicago Advanced Imaging Core is parent organization of: SEED is parent organization of: eQtlBma is parent organization of: BIRN Coordinating Center is parent organization of: ImageScope is parent organization of: University of Chicago Department of Neuroscience is parent organization of: Chicago Center for Diabetes Translation Research Outcomes Improvement Core is parent organization of: Chicago Center for Diabetes Translation Research Quantitative Analysis Core is parent organization of: Chicago Center for Diabetes Translation Research is parent organization of: Chicago Center for Diabetes Translation Research Health Disparities and Community-Based Participatory Research Core is parent organization of: University of Chicago Diabetes Research and Training Center Administrative Core is parent organization of: University of Chicago Diabetes Research and Training Center Islet Cell Biology Core is parent organization of: University of Chicago Diabetes Research and Training Center Molecular Biology and Genetics Core Laboratory is parent organization of: University of Chicago Diabetes Research and Training Center is parent organization of: Monogenic Diabetes Registry is parent organization of: RaptorX is parent organization of: Chicago University Human Imaging Research Office Core Facility is parent organization of: University of Chicago Transgenic and ES Cell Technology Mouse Core Facility is parent organization of: University of Chicago Functional Genomics Core Facility is parent organization of: University of Chicago Integrated Light Microscopy Core Facility is parent organization of: University of Chicago Advanced Electron Microscopy Core Facility is parent organization of: University of Chicago Human Tissue Resource Center Core Facility is parent organization of: University of Chicago Cellular and Tissue Based Processing cGMP Core Facility is parent organization of: TreeMix is parent organization of: University of Chicago Animal Resources Center Core Facility is parent organization of: University of Chicago Proteomics Platform Core Facility is parent organization of: University of Chicago Center for Research Informatics Bioinformatics Core Facility is parent organization of: University of Chicago Human Disease and Immune Discovery Core Facility is parent organization of: University of Chicago Organoid and Primary Culture Research Core Facility is parent organization of: University of Chicago Gnotobiotic Research Animal Core Facility is parent organization of: University of Chicago Biomolecular Nuclear Magnetic Resonance Core Facility is parent organization of: University of Chicago Metabolomics Platform Core Facility is parent organization of: University of Chicago Engineering and Technical Support Group Core Facility is parent organization of: University of Chicago Pritzker Nanofabrication Core Facility is parent organization of: University of Chicago MRI Research Center Core Facility is parent organization of: University of Chicago PaleoCT Core Facility is parent organization of: University of Chicago Single Cell Immunophenotyping Core Facility is parent organization of: University of Chicago FIB-SEM Core Facility is parent organization of: University of Chicago Cellular Screening Center Core Facility is parent organization of: University of Chicago Human Immunologic Monitoring Core Facility |
Free | nlx_50001, Crossref funder ID:100007234, Wikidata:Q131252, grid.170205.1, ISNI:0000 0004 1936 7822 | https://ror.org/024mw5h28 | SCR_002832 | University of Chicago, UChicago | 2026-08-15 11:22:18 | 3 | |||||||
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Fellowship for Interpretation of Genomes Resource Report Resource Website |
Fellowship for Interpretation of Genomes (RRID:SCR_004821) | FIG | data or information resource, portal, topical portal | Fonstein, Kogan, Osterman, Overbeek and Vonstein found the non-profit Fellowship for Interpretation of Genomes (FIG) to follow their vision of seeking advances in understanding through comparative analysis of the growing body of genomic data. The team at FIG began a new open source comparative genomics environment, the SEED. The Project to Annotate 1000 Genomes is a central goal of FIG. FIG is a nonprofit organization devoted to providing support for those analyzing genomes. It focuses on organizing the data needed to support interpretation of genomes, providing the infrastructure needed by the world community in its efforts to achieve understanding. FIG offers the key services required to architect and implement a comparative framework for interpreting genomes. In addition, we pick specific, critical problems and attempt to actively participate in the unraveling of the secrets within these amazing entities. It is only by merging the work of building infrastructure with the applications that use it that we will more deeply understand what is needed at each step. | is parent organization of: SEED | nlx_80790 | SCR_004821 | 2026-08-21 12:37:28 | 0 | ||||||||||
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Argonne National Laboratory Resource Report Resource Website 1+ mentions |
Argonne National Laboratory (RRID:SCR_011095) | Argonne | institution | For six decades, the U.S. Department of Energy''s (DOE''s) Argonne National Laboratory has excelled in conducting scientific research in support of a secure future for the nation. From Argonne''s inception, the University of Chicago has managed and operated the laboratorya laboratory that has become a scientific leader for DOE and the country. Achievements and honors earned by Argonne researchers include three Nobel Prizes, 90 R&D 100 awards, 700 national and international awards and honors, 750 patents and the start of over 30 small businesses. Argonne National Laboratory, one of the U.S. Department of Energy''s oldest and largest national laboratories for science and engineering research, employs roughly 3,200 employees, including about 1,000 scientists and engineers, three-quarters of whom hold doctoral degrees. Argonne''s mission is to apply a unique mix of world-class science, engineering and user facilities to deliver innovative research and technologies. We create new knowledge that addresses the most important scientific and societal needs of our nation. Research at Argonne centers around three principal areas: *Energy ** Energy Storage: Argonne develops transformational energy storage systems that enable and enhance electric-drive vehicles and a green-energy grid through electrical energy storage development, prototype and manufacturing process engineering, stationary storage and grid management, and electric transportation systems. ** Alternative Energy and Efficiency: Argonne is developing the next generation of alternative energy sources to promote energy independence through improved chemical fuels, advanced biofuels, and solar energy systems, as well as through the optimization of fuel and engine dynamics. ** Nuclear Energy: Argonne develops advanced reactor and fuel cycle systems including fast reactor and fuel cycle technologies, advanced modeling and simulation methods, and innovative nuclear energy systems to enable the safe and sustainable generation of nuclear energy. * Biological and Environmental Systems: Argonne produces integrated molecular-scale, hydrological, economic and social computational models to enable regionally focused ecological and climate assessments through metagenome analysis, protein discovery, regional climate prediction and integrated climate, energy and economic discovery. * National Security: Argonne provides critical security technologies that prevent and mitigate events with potential for mass disruption or destruction through the nonproliferation and forensics of weapons of mass destruction, decision sciences, new sensors and materials, and cyber security. |
has parent organization: University of Chicago; Illinois; USA has parent organization: United States Department of Energy is parent organization of: GeneWays is parent organization of: BioCAT is parent organization of: MG-RAST is parent organization of: SENTRA: a database of prokaryotic signal transduction proteins is parent organization of: Argonne National Laboratory Labs and Facilities is parent organization of: Globus Genomics is parent organization of: SEED is parent organization of: Globus |
nlx_55742, Crossref funder ID: 100006224, Wikidata: Q649120, ISNI: 0000 0001 1939 4845, grid.187073.a | https://ror.org/05gvnxz63 | SCR_011095 | 2026-08-21 12:39:28 | 2 |
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