Tools   Select Another Resource Report Type

https://ggraph.data-imaginist.com/

Software tool as extension of ggplot2 aimed at supporting relational data structures such as networks, graphs, and trees. While it builds upon foundation of ggplot2 and its API it comes with its own self-contained set of geoms, facets, etc., as well as adding concept of layouts to grammar.

Proper citation: ggraph (RRID:SCR_021239) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/ggbiplot/readme/README.html

Software R package to provide ggplot2 implementation of biplot, simultaneous plot of scores for observations and vectors for variables for principal component-like analyses.

Proper citation: ggbiplot (RRID:SCR_025581) Copy   

•   Source: SciCrunch Registry

http://www.r-project.org/

Software environment and programming language for statistical computing and graphics. R is integrated suite of software facilities for data manipulation, calculation and graphical display. Can be extended via packages. Some packages are supplied with the R distribution and more are available through CRAN family.It compiles and runs on wide variety of UNIX platforms, Windows and MacOS.

Proper citation: R Project for Statistical Computing (RRID:SCR_001905) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=ggpubr

Software R package provides functions for creating and customizing ggplot2 based publication ready plots.Used for creation of ggplot2 based graphs.

Proper citation: ggpubr (RRID:SCR_021139) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/

Network of ftp and web servers around world that store identical, up to date, versions of code and documentation for R. Package archive network for R programming language.

Proper citation: CRAN (RRID:SCR_003005) Copy   

•   Source: SciCrunch Registry

https://bioconductor.org/packages/EnhancedVolcano/

Software R package to produce publication ready volcano plots with enhanced colouring and labeling. Used to visualise results of differential expression analyses.

Proper citation: EnhancedVolcano (RRID:SCR_018931) Copy   

•   Source: SciCrunch Registry

http://www.debian.org

Debian is Linux distribution composed of free and open source software, developed by community supported Debian Project, which was established by Ian Murdock on August 16, 1993.Debian comes with over 59000 packages (precompiled software that is bundled up in nice format for easy installation on your machine), package manager (APT), and other utilities that make it possible to manage thousands of packages on thousands of computers as easily as installing single application.

Proper citation: Debian (RRID:SCR_006638) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/ggstatsplot/index.html

Software R package extension of ggplot2 designed to create information rich plots that include details from statistical tests directly within the visual output. Used to enhance {ggplot2} plots with statistical analysis.

Proper citation: ggstatsplot (RRID:SCR_028366) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/ggrastr/index.html

Software R package to Rasterize Layers for ggplot2.

Proper citation: ggrastr (RRID:SCR_024825) Copy   

•   Source: SciCrunch Registry

http://mjskay.github.io/tidybayes/

Software R package to integrate popular Bayesian modeling methods into tidy data plus ggplot workflow.

Proper citation: tidybayes (RRID:SCR_024889) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/web/packages/ggsci/vignettes/ggsci.html

Software R package that provides scientific-themed color palettes for ggplot2, offering visually appealing and publication-quality color schemes inspired by scientific journals and data visualization standards.

Proper citation: ggsci (RRID:SCR_026471) Copy   

•   Source: SciCrunch Registry

https://huygens.science.uva.nl/PlotsOfData/

Web app for visualizing data together with their summaries. Visualizes data and statistics to enable comparison of experimental conditions. Written in R and uses packages including shiny, ggplot2, dplyr, tidyr, readr, magrittr, ggbeeswarm, readxl, DT. Github page of PlotsOfData can be used to trace changes between different versions.

Proper citation: PlotsOfData (RRID:SCR_018333) Copy   

•   Source: SciCrunch Registry

https://bio.tools

Community registry of software tools and data resources for life sciences. Tools and data services registry as community effort to document bioinformatics resources. Registry of software and databases, facilitating researchers from across spectrum of biological and biomedical science. When adding tools to registry, information including URL, contact information, resource function, field its relevant in, and its primary publication are required. Development is supported by ELIXIR - the European Infrastructure for Biological Information.

Proper citation: bio.tools (RRID:SCR_014695) Copy   

•   Source: SciCrunch Registry

https://plot.ly

Web application to collaboratively create interactive graphs and share them with others. JavaScript toolbox plotly.js enables users with little to no web development skills to make scientific charts.

Proper citation: Plotly (RRID:SCR_013991) Copy   

•   Source: SciCrunch Registry

https://cran.r-project.org/package=ggrepel

Software tool to provide text and label geoms for ggplot2 that help to avoid overlapping text labels. Labels repel away from each other and away from data points.

Proper citation: ggrepel (RRID:SCR_017393) Copy   

•   Source: SciCrunch Registry

https://github.com/sinhrks/ggfortify

Software tool as unified interface to visualize statistical results of popular R packages. Provides unified interface that enables users to use one line of code to visualize statistical results of many R packages using ggplot2 idioms. Allows ggplot2 to handle some popular R packages.

Proper citation: ggfortify (RRID:SCR_024888) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=metaviz

Software R package to create plots of meta-analytic data. Used to create forest plots, funnel plots, and their variants, such as rainforest plots, thick forest plots, additional evidence contour funnel plots, and sunset funnel plots. In addition, functionalities for visual inference with funnel plot in context of meta-analysis are provided.

Proper citation: metaviz (RRID:SCR_025424) Copy   

•   Source: SciCrunch Registry

https://github.com/ggobi/ggally

Software R package that extends ggplot2 by adding several functions to reduce complexity of combining geoms with transformed data. Some of these functions include pairwise plot matrix, scatterplot plot matrix, parallel coordinates plot, survival plot, and several functions to plot networks.

Proper citation: GGally (RRID:SCR_026114) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=ggeffects

Software R package to create tidy data frames of marginal effects for ggplot from model outputs. Used to compute marginal effects and adjusted predictions from statistical models and returns result as tidy data frames.

Proper citation: ggeffects (RRID:SCR_022496) Copy   

•   Source: SciCrunch Registry

https://CRAN.R-project.org/package=ggforce

Software R package providing missing functionality to ggplot2 through extension system introduced with ggplot2 v2.0.0.

Proper citation: ggforce (RRID:SCR_022575) Copy   

•   Source: SciCrunch Registry