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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
Network of ftp and web servers around world that store identical, up to date, versions of code and documentation for R. Package archive network for R programming language.
Proper citation: CRAN (RRID:SCR_003005) Copy
https://cran.r-project.org/package=ggrepel
Software tool to provide text and label geoms for ggplot2 that help to avoid overlapping text labels. Labels repel away from each other and away from data points.
Proper citation: ggrepel (RRID:SCR_017393) Copy
https://CRAN.R-project.org/package=ggeffects
Software R package to create tidy data frames of marginal effects for ggplot from model outputs. Used to compute marginal effects and adjusted predictions from statistical models and returns result as tidy data frames.
Proper citation: ggeffects (RRID:SCR_022496) Copy
https://CRAN.R-project.org/package=ggforce
Software R package providing missing functionality to ggplot2 through extension system introduced with ggplot2 v2.0.0.
Proper citation: ggforce (RRID:SCR_022575) Copy
https://CRAN.R-project.org/package=ggsignif
Software package to indicate if two groups are significantly different. Used to add significance brackets to ggplots.
Proper citation: ggsignif (RRID:SCR_023047) Copy
https://CRAN.R-project.org/package=ComplexUpset
Software R package for visualization of intersecting sets. Used for quantitative analysis of sets, their intersections, and aggregates of intersections. Visualizes set intersections in matrix layout and introduces aggregates based on groupings and queries.
Proper citation: ComplexUpset (RRID:SCR_022752) Copy
https://CRAN.R-project.org/package=tidyverse
Software tool as collection of R packages designed for data science which share underlying design philosophy, grammar, and data structures. Packages work in harmony because they share common data representations and API design. Used in everyday data analyses.
Proper citation: tidyverse (RRID:SCR_019186) Copy
https://corybrunson.github.io/ggalluvial/
Software tool as ggplot2 extension for alluvial plots. Used to visualize frequency distributions over time or frequency tables involving several categorical variables. Requires user to specify dimensions, either as separate aesthetics or as key-value pairs, relies on separate layers (stats and geoms) to produce strata, alluvia, and alluvial segments called lodes and flows.
Proper citation: ggalluvial (RRID:SCR_021253) Copy
https://cran.r-project.org/web/packages/cowplot/index.html
Software R package as streamlined plot theme and plot annotations for ggplot2. Provides various features that help with creating publication quality figures with ggplot2, such as set of themes, functions to align plots and arrange them into complex compound figures, and functions that make it easy to annotate plots and or mix plots with images.
Proper citation: cowplot (RRID:SCR_018081) Copy
https://cran.r-project.org/web/packages/ggbreak/vignettes/ggbreak.html
Software package provides several scale functions to break down ‘gg’ plot into pieces and align them together with gap plot or without (wrap plot or cut plot) ignoring subplots. Package was first designed to set breakpoints for truncating plot to shrink outlier long branch of phylogenetic tree. Set Axis Break for ggplot2.
Proper citation: ggbreak (RRID:SCR_024824) Copy
Software environment and programming language for statistical computing and graphics. R is integrated suite of software facilities for data manipulation, calculation and graphical display. Can be extended via packages. Some packages are supplied with the R distribution and more are available through CRAN family.It compiles and runs on wide variety of UNIX platforms, Windows and MacOS.
Proper citation: R Project for Statistical Computing (RRID:SCR_001905) Copy
https://CRAN.R-project.org/package=ggpubr
Software R package provides functions for creating and customizing ggplot2 based publication ready plots.Used for creation of ggplot2 based graphs.
Proper citation: ggpubr (RRID:SCR_021139) Copy
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