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A collaboration which works to transform scholarly communications through advanced use of computers and the Web. FORCE11 advocates the digital publishing of papers in order to enable more effective scholarly communication. The virtual community also advocates the publication of software tools and research communication by means of social media channels. As such, FORCE11 provides access to information and tools for the wider scientific community.
Proper citation: FORCE11 (RRID:SCR_005334) Copy
http://purl.bioontology.org/ontology/RSA
An ontology for sequence annotations and how to preserve them with reference sequences.
Proper citation: Reference Sequence Annotation (RRID:SCR_006095) Copy
http://purl.bioontology.org/ontology/PMR
Ontology for knowledge representation related to computer-based decision support in rehabilitation; concepts and relationships in the rehabilitation domain, integrating clinical practice, the ICD (specifically its 11th revision), the clinical investigator record ontology, the ICF and SNOMED CT.
Proper citation: Physical Medicine and Rehabilitation (RRID:SCR_005948) Copy
http://www.human-phenotype-ontology.org/
Provides standardized vocabulary of phenotypic abnormalities encountered in human disease. Structured and controlled vocabulary for phenotypic features encountered in human hereditary and other disease. HPO is being developed in collaboration with members of OBO Foundry (Open Biological and Biomedical Ontologies), and logical definitions for HPO terms are being developed using PATO and a number of other ontologies including FMA, GO, ChEBI, and MPATH.
Proper citation: Human Phenotype Ontology (RRID:SCR_006016) Copy
http://purl.bioontology.org/ontology/VO
A biomedical ontology in the vaccine domain
Proper citation: Vaccine Ontology (RRID:SCR_006271) Copy
http://www.informatics.jax.org/searches/AMA_form.shtml
Ontology that organizes anatomical structures for the adult mouse (Theiler stage 28) spatially and functionally, using ''is a'' and ''part of'' relationships. The ontology is used to describe expression data for the adult mouse and phenotype data pertinent to anatomy in standardized ways. The browser can be used to view anatomical terms and their relationships in a hierarchical display.
Proper citation: Adult Mouse Anatomy Ontology (RRID:SCR_006568) Copy
http://purl.bioontology.org/ontology/BCGO
Ontology that assigns a grade to a tumor starting from the 3 criteria of the NGS
Proper citation: Breast Cancer Grading Ontology (RRID:SCR_006658) Copy
http://purl.bioontology.org/ontology/SDO
An application ontology for the domain of Sleep Medicine.
Proper citation: Sleep Domain Ontology (RRID:SCR_006808) Copy
https://bioportal.bioontology.org/ontologies/NEMO/?p=summary
Ontology that describes classes of event-related brain potentials (ERP) and their properties, including spatial, temporal, and functional (cognitive / behavioral) attributes, and data-level attributes (acquisition and analysis parameters). Its aim is to support data sharing, logic-based queries and mapping/integration of patterns across data from different labs, experiment paradigms, and modalities (EEG/MEG).
Proper citation: NEMO Ontology (RRID:SCR_003386) Copy
https://github.com/egonw/semanticchemistry
An ontology that aims to establish a standard in representing chemical information including chemical structure and the ability to richly describe chemical properties, whether intrinsic or computed. It includes terms for the descriptors commonly used in cheminformatics software applications and the algorithms which generate them.
Proper citation: Chemical Information Ontology (RRID:SCR_003290) Copy
An ontology of physico-chemical processes, i.e. physico-chemical changes occurring in course of time. It includes both microscopic processes (involving molecular entities or subatomic particles) and macroscopic processes. Some biochemical processes from Gene Ontology (GO Biological process) can be described as instances of REX.
Proper citation: Physico-Chemical Process (RRID:SCR_003530) Copy
http://purl.bioontology.org/ontology/VTO
An ontology that includes both extinct and extant vertebrates, aiming to provide one comprehensive hierarchy. The hierarchy backbone for extant taxa is based on the NCBI taxonomy. Since the NCBI taxonomy only includes species associated with archived genetic data, to complement this, they also incorporate taxonomic information across the vertebrates from the Paleobiology Database (PaleoDB). The Teleost Taxonomy Ontology (TTO) and AmphibiaWeb (AWeb) are incorporated to provide a more authoritative hierarchy and a richer set of names for specific taxonomic groups.
Proper citation: Vertebrate Taxonomy Ontology (RRID:SCR_003518) Copy
http://purl.bioontology.org/ontology/ICPS
Ontology network about Patient Safety Incident. This work has been carried out by the Ontological Engineering Group, using sources from the University of Saint Etienne and the Australian Patient Safety Foundation.
Proper citation: International Classification for Patient Safety (RRID:SCR_003553) Copy
http://purl.bioontology.org/ontology/XCO
An ontology designed to represent the conditions under which physiological and morphological measurements are made both in the clinic and in studies involving humans or model organisms.
Proper citation: Experimental Conditions Ontology (RRID:SCR_003306) Copy
Organization that provides biomedical researchers with online tools and a web portal enabling them to access, review, and integrate disparate ontological resources in all aspects of biomedical investigation and clinical practice. A major focus of the work involves the use of biomedical ontologies to aid in the management and analysis of data derived from complex experiments.
Proper citation: National Center for Biomedical Ontology (RRID:SCR_003304) Copy
http://purl.bioontology.org/ontology/FB-SP
The taxonomy of the family Drosophilidae (largely after Baechli) and of other taxa referred to in FlyBase.
Proper citation: Fly Taxonomy (RRID:SCR_003317) Copy
http://purl.bioontology.org/ontology/SNMI
Ontology of systematized nomenclature of human and veterinary medicine: SNOMED International. Cote, Roger A., editor. Northfield (IL): College of American Pathologists; Schaumburg (IL): American Veterinary Medical Association, Version 3.5, 1998.
Proper citation: Systematized Nomenclature of Medicine - International Version (RRID:SCR_003849) Copy
http://purl.bioontology.org/ontology/MFO
A structured controlled vocabulary of the anatomy and development of the Japanese medaka fish, Oryzias latipes.
Proper citation: Medaka Fish Anatomy and Development Ontology (RRID:SCR_003719) Copy
http://purl.bioontology.org/ontology/MDDB
Ontology of master drug data base, 2009_08_05
Proper citation: Master Drug Data Base Clinical Drugs (RRID:SCR_003668) Copy
http://purl.bioontology.org/ontology/MSTDE
Metathesaurus Version of Minimal Standard Terminology Digestive Endoscopy. Bethesda, MD: National Library of Medicine, 2001.
Proper citation: Minimal Standard Terminology of Digestive Endoscopy (RRID:SCR_003785) Copy
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