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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
A programming library that uses standard graphics cards to produce 2D and 3D visual stimuli for vision research experiments.
Proper citation: Vision Egg (RRID:SCR_014589) Copy
A C++ application designed for compression of genome collections from the same species.
Proper citation: GDC (RRID:SCR_001007) Copy
http://bd2k.ini.usc.edu/tools/bdbag/
Software package with tools which assemble, identify, and provide access to subsets of data in a large and complex data collection workflow. The software utilities work primarily with BagIt packages that conform the BDDS Bagit and BDDS Bagit/RO profiles. JSON-LD is used to provide a standard way for linking metadata with existing ontologies and vocabularies.
Proper citation: Big Data Bag (RRID:SCR_014624) Copy
A collection of big data analytics tools. FlashX performs data analytics in the form of graphs and matrices and utilize solid-state drives (SSDs) to scale to large datasets in a single machine. It has three main components: FlashGraph, FlashMatrix, and FlashR. FlashGraph is a general-purpose programming framework with a vertex-centric programming interface for large-scale graph analysis. FlashMatrix is a matrix computation engine that provides a small set of generalized matrix operations to express varieties of data mining and machine learning algorithms. FlashR is an extension of the R programming framework to process datasets at a scale of terabytes with the speed of optimized parallel C code.
Proper citation: FlashX (RRID:SCR_014536) Copy
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
