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http://www.slicer.org/slicerWiki/index.php/Slicer3:Module:Rician_Noise_Removal
Two Slicer3 modules removing rician noise in diffusion tensor MRI
Proper citation: Slicer3 Module Rician noise filter (RRID:SCR_009614) Copy
http://www.nitrc.org/projects/slicer3examples/
Example Slicer3 plugins that can be built against a Slicer3 build or a Slicer3 installation. Note: these are for 3D Slicer version 3. There is now a version 4 of 3D Slicer available. Information about extensions for version 4 can be found at the following links: http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/SlicerApplication/ExtensionsManager http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Tutorials/BuildTestPackageDistributeExtensions
Proper citation: Slicer3 Example Modules (RRID:SCR_002559) Copy
http://www.nitrc.org/projects/finslertract/
This module implements the Finsler tractography method with HARDI data described by J. Melonakos et al. From a set of seeding and target points, the paths are estimated as the shortest path taking into account a local, directional dependent cost. The output provided is the connectivity map from each voxel in the volume to the seeding points, plus a vector volume with the directions tangent to the fiber bundles at each point. If the Backtracing module within is built, these directions can be traced back to actually compute the fiber bundles (VTK required). The software can be built as either a stand-alone or a CLI plugin for 3D Slicer.
Proper citation: Finsler tractography module for Slicer (RRID:SCR_009477) Copy
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