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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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IBEX Knowledge Base Resource Report Resource Website 1+ mentions |
IBEX Knowledge Base (RRID:SCR_025296) | knowledge base | Open, global repository as central resource for reagents, protocols, panels, publications, software, and datasets. In addition to IBEX, we support standard, single cycle multiplexed imaging (Multiplexed 2D imaging), volume imaging of cleared tissues with clearing enhanced 3D (Ce3D), highly multiplexed 3D imaging (Ce3D-IBEX), and extension of the IBEX dye inactivation protocol to the Leica Cell DIVE (Cell DIVE-IBEX). Committed to sharing knowledge related to multiplexed imaging. Antibody validation community knowledgebase. | Antibody, validation, multiplexed imaging, | Chan Zuckerberg Initiative ; NCI ; NIAID ; Schroeder Allergy and Immunology Research Institute ; McMaster University ; CA ; Wellcome Trust |
Free, Freely available | https://zenodo.org/records/7693279 | SCR_025296 | Iterative Bleaching Extends Multiplexity (IBEX) Knowledge-Base | 2026-08-29 11:33:51 | 4 | ||||||||
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HumanIslets Resource Report Resource Website 10+ mentions |
HumanIslets (RRID:SCR_025719) | data or information resource, portal, project portal | Data visualization portal for HumanIslets project. Integrated platform for human islet data access and analysis. Includes data on human islet donors, allows users to access linked datasets describing molecular profiles, islet function and donor phenotypes, and to perform various statistical and functional analyses at donor, islet and single-cell levels. Provides set of resources and tools to support metabolism and diabetes research community. | human islet data, data access and analysis, molecular profiles, islet function, donor phenotypes, metabolism, diabetes | BC Knowledge Development Fund ; BCCHRI Child Health Integrative Partnership Strategy Funding ; Canada Foundation for Innovation ; Canadian Institutes of Health Research ; Genome Canada ; NIDDK U01 DK 120447; NIDDK U01-DK-123716; NIDDK U01-DK085545; NIDDK U01-DK105535; NIDDK UM-1DK126185; UBC Life Sciences Institute ; Wellcome Trust |
PMID:38948734 | Free, Freely available | SCR_025719 | 2026-08-29 11:34:10 | 13 | |||||||||
|
RNAmut Resource Report Resource Website |
RNAmut (RRID:SCR_026965) | software resource, software toolkit, source code | Software package for robust identification of somatic mutations in acute myeloid leukemia using RNA-sequencing. Detects clinically important somatic mutations from RNA-seq data on relatively small gene panel (typically less than 100 genes). | identification of somatic mutations, acute myeloid leukemia, RNA-sequencing, clinically important somatic mutations, RNA-seq data, small gene panel, | European Research Council ; European Union Horizon 2020 ; Wellcome Trust |
PMID:31649132 | Free, Available for download, Freely available | SCR_026965 | 2026-08-29 11:34:59 | 0 | |||||||||
|
ped-sim Resource Report Resource Website 1+ mentions |
ped-sim (RRID:SCR_026957) | simulation software, software application, software resource, source code | Software tool to simulate pedigree structures. Used for simulating relatives that can utilize either sex-specific or sex averaged genetic maps and also either model of crossover interference or traditional Poisson model for inter-crossover distances. | Pedigree simulator, simulate pedigree structures, simulating relatives, sex-specific, sex averaged, genetic maps, | Alfred P. Sloan Research Fellowship ; NHLBI P01 HL045222; NHLBI R01 HL0113323; NIDDK R01 DK047482; NIDDK R01 DK053889; NIGMS R35 GM133805; NIGMS T32 GM007617; NIGMS T32 GM083937; United States-Israel Binational Science Foundation ; Wellcome Trust |
PMID:31860654 | Free, Available for download, Freely available | SCR_026957 | Ped-sim | 2026-08-29 11:34:59 | 4 | ||||||||
|
TWOMBLI Resource Report Resource Website 1+ mentions |
TWOMBLI (RRID:SCR_027217) | software resource, software toolkit, source code | Software pipeline includes metrics of matrix alignment, length, branching, end points, gaps, fractal dimension, curvature, and the distribution of fibre thickness. FIJI macro for quantifying pattern in extracellular matrix. | quantifying pattern in extracellular matrix, matrix alignment, length, branching, end points, gaps, fractal dimension, curvature, distribution of fibre thickness, | is a plug in for: Fiji | Cancer Research UK ; Spanish Society for Medical Oncology ; UK Medical Research Council ; Wellcome Trust |
PMID:33504622 | Free, Available for download, Freely available, | SCR_027217 | Workflow Of Matrix BioLogy Informatics, , Workflow Of Matrix BioLogy Informatics (TWOMBLI) | 2026-08-29 11:35:11 | 1 | |||||||
|
Vireo Resource Report Resource Website 1+ mentions |
Vireo (RRID:SCR_027463) | software application, software resource, source code | Software tool for Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference. | Bayesian demultiplexing, pooled single-cell RNA-seq data, without genotype reference, | EMBL-EBI ; Medical Research Council ; National Health and Medical Research Council of Australia ; University of Cambridge ; Wellcome Trust |
PMID:31836005 | Free, Available for download, Freely available | SCR_027463 | 2026-08-29 11:35:13 | 2 | |||||||||
|
Cell Model Passports Resource Report Resource Website 10+ mentions |
Cell Model Passports (RRID:SCR_027682) | catalog, data or information resource, database | Hub for clinical, genetic and functional datasets of preclinical cancer models.Provides details of cell model relationships, patient and clinical information, as well as access to associated genetic and functional datasets. Passports database contains curated details and standardized annotation for cell models, including cancer organoid cultures. Users can navigate database via tissue, cancer-type, genetic feature and data availability to select model. REST-API provides programmatic data access and exploration. | clinical, genetic, functional, datasets, preclinical cancer models, | has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom | Wellcome Sanger Institute ; Wellcome Trust |
PMID:30260411 | Free, Freely available | SCR_027682 | 2026-08-29 11:35:27 | 15 | ||||||||
|
TryTripDB Resource Report Resource Website 10+ mentions |
TryTripDB (RRID:SCR_028607) | data or information resource, database | Free online resource for data mining of genomic and functional data from these kinetoplastid parasites and is part of the VEuPathDB Bioinformatics Resource Center. Integrates functional genome scale datasets (e.g. transcript expression, protein expression, genetic variation data) and information predicted from automated bioinformatics pipelines and from manual curation. Provides a user friendly web interface and a number of tools and functions for users to conduct in silico experiments to ask questions and generate hypotheses. Researchers can also contribute their expertise via the User Comments form and Apollo annotation platform, and utilize cloud-based workspace to analyze their own data. | data mining, genomic data, functional data, kinetoplastid parasites, | NIAID ; Wellcome Trust |
PMID:36656904 | Free, Freely available | SCR_028607 | 2026-08-29 11:35:33 | 14 |
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