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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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ConnectomeDB Resource Report Resource Website 50+ mentions |
ConnectomeDB (RRID:SCR_004830) | ConnectomeDB | data or information resource, data repository, database, image collection, image repository, service resource, storage service resource | Data management platform that houses all data generated by the Human Connectome Project - image data, clinical evaluations, behavioral data and more. ConnectomeDB stores raw image data, as well as results of analysis and processing pipelines. Using the ConnectomeDB infrastructure, research centers will be also able to manage Connectome-like projects, including data upload and entry, quality control, processing pipelines, and data distribution. ConnectomeDB is designed to be a data-mining tool, that allows users to generate and test hypotheses based on groups of subjects. Using the ConnectomeDB interface, users can easily search, browse and filter large amounts of subject data, and download necessary files for many kinds of analysis. ConnectomeDB is designed to work seamlessly with Connectome Workbench, an interactive, multidimensional visualization platform designed specifically for handling connectivity data. De-identified data within ConnectomeDB is publicly accessible. Access to additional data may be available to qualified research investigators. ConnectomeDB is being hosted on a BlueArc storage platform housed at Washington University through the year 2020. This data platform is based on XNAT, an open-source image informatics software toolkit developed by the NRG at Washington University. ConnectomeDB itself is fully open source. | brain, connectivity, human, adult human, evaluation, clinical, behavior, data set, diffusion imaging, resting-state fmri, task-evoked fmri, t1-weighted mri, t2-weighted mri, structural mapping, myelin mapping, magnetoencephalography, electroencephalography, fmri, twin |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: XNAT - The Extensible Neuroimaging Archive Toolkit has parent organization: Washington University in St. Louis; Missouri; USA works with: Connectome Workbench |
Healthy, Twin, Non-twin sibling | NIH Blueprint for Neuroscience Research ; Washington University in St. Louis; Missouri; USA ; McDonnell Center for Systems Neuroscience ; NIMH 1U54MH091657 |
PMID:22366334 | Account required, Open unspecified license, Acknowledgement required, See Data Use Terms, The community can contribute to this resource | nlx_143923 | SCR_004830 | 2026-09-03 04:57:57 | 63 | |||||
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Brain-Art Competition Resource Report Resource Website |
Brain-Art Competition (RRID:SCR_005360) | Brain-Art Competition | data or information resource, image, portal, topical portal | An annual Brain-Art Competition to recognize the beauty and creativity of artistic renderings emerging from the neuroimaging community. Submission deadline: June 1st, 2012. Awards will be announced on June 11th during the OHBM conference in Beijing. (You need not be present to win) Countless hours are devoted to creation of informative visualizations for communicating neuroscientific findings. This competition once again aims to recognize the artistic creativity of our community that often goes underappreciated in the publication process. We are inviting researchers to submit their favorite unpublished works for entry. Both team and single-person entries are welcomed. The competition will have five award categories: # Best Representation of the Human Connectome # Best Abstract Brain Illustration # Best Educational Brain Illustration # Best Humorous Brain Illustration # Best Video Illustration of the Brain Submissions will be evaluated based on their aesthetic merit | neuroimaging, competition, data set, illustration, brain, art | has parent organization: Neuro Bureau | nlx_144427 | SCR_005360 | Neuro Bureau Brain-Art Competition | 2026-09-03 04:57:56 | 0 | ||||||||
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Brain Canada Resource Report Resource Website 10+ mentions |
Brain Canada (RRID:SCR_005053) | Brain Canada | data or information resource, funding resource, portal, topical portal | Brain Canada is a national non-profit organization that develops and supports collaborative, multidisciplinary, multi-institutional research across the neurosciences. Through partnering with the public, private and voluntary sectors, Brain Canada connects the knowledge and resources available in this area to accelerate neuroscience research and funding and maximize the output of Canada''s world-class scientists and researchers. Brain Canada was created to address the twin challenges of increasing the scale of brain research funding in Canada and widening its scope to encourage interdisciplinary collaboration to produce insights for treating multiple disorders. Brain Canada is built on the successes and model of NeuroScience Canada (NSC). Established in 1999, NSC raised more than $11.5 million, leveraged over $20 million with partnered funding, and funded 100 individual and teams of researchers in Canada. Brain Canada is the new vision for Canadian brain researchthe voice for the brain and the grouping of brain disorders, raising awareness about their prevalence and impact on individuals, families, the economy and society. But most important, through the research we are funding, we are giving hope to the millions of Canadians who are directly or indirectly touched by diseases, disorders, and injuries of the brain, spinal cord and nervous system. | brain, neuroscience, research, brain disorder | is related to: Canadian Open Neuroscience Platform | nlx_144038 | SCR_005053 | Brain Canada Foundation | 2026-09-03 04:58:02 | 11 | ||||||||
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Biomedical Informatics Research Network Resource Report Resource Website 10+ mentions |
Biomedical Informatics Research Network (RRID:SCR_005163) | BIRN | atlas, data or information resource, data repository, database, service resource, software resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 22, 2023. National initiative to advance biomedical research through data sharing and online collaboration that provides data sharing infrastructure, software tools, strategies and advisory services. Groups may choose whether to share data internally or with external audiences. Hardware and data remain under control of individual user groups. | dti, fmri, alzheimer's disease, cognitive impairment, collaborative environment, cyberinfrastructure, data sharing, depressive disorder, information technology, infrastructure, memory dysfunction, microarray, mri, neurodegenerative disease, neuroinformatics, neuroimaging, genetics, biomedical material, neurobiology, electrophysiology, collaboration, biomedical, imaging, imaging system, biomedical engineering, brain, health |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: re3data.org is listed by: DataCite has parent organization: University of Southern California; Los Angeles; USA is parent organization of: Morphometry BIRN is parent organization of: Knowledge Engineering from Experimental Design is parent organization of: Mouse Biomedical Informatics Research Network is parent organization of: NIH Topic Maps - A Topic Database of NIH Funded Grants is parent organization of: Human Imaging Database is parent organization of: Function BIRN is parent organization of: B0 and eddy current correction for DTI is parent organization of: BrainSuite is parent organization of: Open Access Series of Imaging Studies |
NIH Blueprint for Neuroscience Research ; NCRR 1U24-RR025736; NCRR U24-RR021992; NCRR U24-RR021760; NCRR 1U24-RR026057-01; NIGMS U24 GM104203 |
PMID:21515543 PMID:18348946 PMID:17238407 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00027, r3d100010770 | http://www.nitrc.org/projects/birn, https://doi.org/10.17616/R3F02K | http://www.birncommunity.org/, https://neuroscienceblueprint.nih.gov/factSheet/birn.htm | SCR_005163 | BIRN - The Conduit for Biomedical Research, Biomedical Informatics Research Network - The Conduit for Biomedical Research | 2026-09-03 04:57:59 | 12 | |||
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CoCoMac Resource Report Resource Website 50+ mentions |
CoCoMac (RRID:SCR_007277) | CoCoMac | data or information resource, database | Online access (html or xml) to structural connectivity ("wiring") data on the Macaque brain. The database has become by far the largest of its kind, with data extracted from more than four hundred published tracing studies. The main database, contains data from tracing studies on anatomical connectivity in the macaque cerebral cortex. Also available are a variety of tools including a graphical simulation workbench, map displays and the CoCoMac-Paxinos-3D viewer. Submissions are welcome. To overcome the problem of divergent brain maps ORT (Objective Relational Transformation) was developed, an algorithmic method to convert data in a coordinate- independent way based on logical relations between areas in different brain maps. CoCoMac data is used to analyze the organization of the cerebral cortex, and to establish its structure- function relationships. This includes multi-variate statistics and computer simulation of models that take into account the real anatomy of the primate cerebral cortex. This site * Provides full, scriptable open access to the data in CoCoMac (you must adhere to the citation policy) * Powers the graphical interface to CoCoMac provided by the Scalable Brain Atlas * Sports an extensive search/browse wizard, which automatically constructs complex search queries and lets you further explore the database from the results page. * Allows you to get your hands dirty, by using the custom SQL query service. * Displays connectivity data in tabular form, through the axonal projections service. CoCoMac 2 was initiated at the Donders Institute for Brain, Cognition and Behaviour, and is currently supported by the German neuroinformatics node and the Computational and Systems Neuroscience group at the Juelich research institute. | brain, macaque, non-human primate, connectivity, microcircuitry, prefrontal cortex, neural network, structure, function, neuroanatomy, brain circuitry, axonal projection, data repository, visualization, atlas application, computational neuroscience, magnetic resonance, ontology, php, tractography, web environment, software, FASEB list |
is used by: NIF Data Federation is used by: Integrated Nervous System Connectivity is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Scalable Brain Atlas has parent organization: German Neuroinformatics Node (G-Node) is parent organization of: CoCoMac-Paxinos3D viewer |
DFG ; Heinrich-Heine University of Dusseldorf; Dusseldorf; Germany ; Wellcome Trust |
PMID:23293600 PMID:11545697 PMID:15319511 PMID:15971361 PMID:10703043 |
Open Access | nif-0000-00022 | http://www.nitrc.org/projects/cocomac, http://134.95.56.239/home.asp | http://cocomac.org/, http://cocomac.g-node.org/drupal/ | SCR_007277 | CoCoMac Brain Connectivity Database, Collations of Connectivity Data on the Macaque Brain, CoCoMac (Collations of Connectivity Data on the Macaque Brain) | 2026-09-03 05:02:24 | 60 | |||
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Open Access Series of Imaging Studies Resource Report Resource Website 100+ mentions |
Open Access Series of Imaging Studies (RRID:SCR_007385) | OASIS | data or information resource, database | Project aimed at making neuroimaging data sets of brain freely available to scientific community. By compiling and freely distributing neuroimaging data sets, future discoveries in basic and clinical neuroscience are facilitated. | early, stage, alzheimer, disease, mri, fmri, image, brain, dicom, magnetic, resonance, collection, data, FASEB list |
is used by: NIF Data Federation is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Automatic Registration Toolbox is related to: 2012 MICCAI Multi-Atlas Labeling Challenge Data has parent organization: Howard Hughes Medical Institute has parent organization: Washington University School of Medicine in St. Louis; Missouri; USA has parent organization: Biomedical Informatics Research Network is parent organization of: Cover Pages |
Alzheimer's disease, Dementia, Normal, Nondemented, Aging | NCRR U24 RR021382; NIA P01 AG03991; NIA P50 AG05681; NIA R01 AG021910; NIMH P50 MH071616; NIMH R01 MH56584 |
Free, Acknowledgement required | r3d100012182, nif-0000-00387 | http://www.nitrc.org/projects/oasis, https://doi.org/10.17616/R3RS8K | SCR_007385 | The Open Access Series of Imaging Studies, Open Access Series of Imaging Studies, OASIS | 2026-09-03 05:02:25 | 357 | ||||
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Hyper Cell Line Database Resource Report Resource Website |
Hyper Cell Line Database (RRID:SCR_007730) | HyperCLDB | biomaterial supply resource, material resource, tissue bank | Hypertext on cell culture availability extracted from the Cell Line Data Base of the Interlab Project. HyperCLDB includes links to records of OMIM, the Online Mendelian Inheritance in Man Catalogue, and now also links to the PubMed, database of bibliographic biomedical references, which are drawn primarily from MEDLINE and PREMEDLINE. | cell, cell line, tumor, tissue, organ, blood, bodily fluid, ascitic fluid, brain, bone marrow, cancer, transforming agent, software, bio.tools |
is listed by: One Mind Biospecimen Bank Listing is listed by: 3DVC is listed by: Debian is listed by: bio.tools is related to: ATCC is related to: Cell Line Knowledge Base has parent organization: IST National Institute for Cancer Research; Genoa; Italy |
Cancer, Etc. | PMID:18927105 | nif-0000-03004, biotools:hypercldb | https://bio.tools/hypercldb | SCR_007730 | 2026-09-03 05:02:42 | 0 | ||||||
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PubAnatomy Resource Report Resource Website |
PubAnatomy (RRID:SCR_007999) | PubAnatomy | data or information resource, database | An integrated exploration of biomedical literature and data. An anatomy viewer can be accessed and searches of PubMed literature are visualized as to the anatomical regions that they effect. PubAnatomy takes advantage of the 25-micron voxel level mouse brain structure annotation generated by the Allen Brain Institute and integrates Allen Brain Atlas gene expression data, relationships between brain regions and diseases for more efficient exploration of Medline database and gene expression data. | molecular neuroanatomy resource, literature, paper, publication, pubmed, visual, graphical interface, brain, brain regions, gene expression |
is related to: Allen Mouse Brain Reference Atlas has parent organization: University of Michigan; Ann Arbor; USA |
PMID:21143788 | nif-0000-07729 | SCR_007999 | 2026-09-03 05:02:54 | 0 | ||||||||
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Alternative Exon Database Resource Report Resource Website |
Alternative Exon Database (RRID:SCR_008157) | AEdb | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on March 27, 2013. A manual generated database for alternative exons and their properties from numerous species - the data is gathered from literature where these exons have been experimentally verified. Most alternative exons are cassette exons and are expressed in more than two tissues. Of all exons whose expression was reported to be specific for a certain tissue, the majority were expressed in the brain. At the moment, AEdb products that are available are sequence (a database of alternative exons), function (a database of functions attributed to constitutive and alternative exon), regulatory sequence (a database of transcript regulatory motifs), minigenes (a table of minigenes and their associations to splicing events), and diseases (a table of diseases associated with splicing and their associations to AltSplice). Alternative splicing is an important regulatory mechanism of mammalian gene expression. The alternative splicing database (ASD) consortium is systematically collecting and annotating data on alternative splicing. The continuation and upgrade of the ASD consists of computationally and manually generated data. Its largest parts are AltSplice, a value-added database of computationally delineated alternative splicing events. Its data include alternatively spliced introns/exons, events, isoform splicing patterns and isoform peptide sequences. AltSplice data are generated by examining gene-transcript alignments. The data are annotated for various biological features including splicing signals, expression states, (SNP)-mediated splicing and cross-species conservation. AEdb forms the manually curated component of ASD. It is a literature-based data set containing sequence and properties of alternatively spliced exons, functional enumeration of observed splicing events, characterization of observed splicing regulatory elements, and a collection of experimentally clarified minigene constructs. | element, exon, expression, gene, alignment, alternative, brain, conservation, cross-specie, disease, isoform, mechanism, minigene, pattern, peptide, regulatory, sequence, signal, splice, splicing, structure intron, tissue, transcript, nucleotide sequence, gene structure, intron, splice site, alternative splicing, sequence, alternative exon, function, constitutive exon, alternative exon, regulatory sequence, transcript regulatory motif, minigene, disease | has parent organization: European Bioinformatics Institute | PMID:16381912 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-21009 | SCR_008157 | 2026-09-03 05:02:47 | 0 | |||||||
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Electroencephalogram Database: Prediction of Epileptic Seizures Resource Report Resource Website |
Electroencephalogram Database: Prediction of Epileptic Seizures (RRID:SCR_008032) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 29,2025. Electroencephalogram (EEG) data recorded from invasive and scalp electrodes. The EEG database contains invasive EEG recordings of 21 patients suffering from medically intractable focal epilepsy. The data were recorded during an invasive pre-surgical epilepsy monitoring at the Epilepsy Center of the University Hospital of Freiburg, Germany. In eleven patients, the epileptic focus was located in neocortical brain structures, in eight patients in the hippocampus, and in two patients in both. In order to obtain a high signal-to-noise ratio, fewer artifacts, and to record directly from focal areas, intracranial grid-, strip-, and depth-electrodes were utilized. The EEG data were acquired using a Neurofile NT digital video EEG system with 128 channels, 256 Hz sampling rate, and a 16 bit analogue-to-digital converter. Notch or band pass filters have not been applied. For each of the patients, there are datasets called ictal and interictal, the former containing files with epileptic seizures and at least 50 min pre-ictal data. the latter containing approximately 24 hours of EEG-recordings without seizure activity. At least 24 h of continuous interictal recordings are available for 13 patients. For the remaining patients interictal invasive EEG data consisting of less than 24 h were joined together, to end up with at least 24 h per patient. An interdisciplinary project between: * Epilepsy Center, University Hospital Freiburg * Bernstein Center for Computational Neuroscience (BCCN), Freiburg * Freiburg Center for Data Analysis and Modeling (FDM). | electrode, electroencephalogram (eeg), epilepsy, epileptic seizure, focal, algorithm, analysis, behavioral, brain, cardiac, computational, data, defibrillator, hippocampus, medically, modeling, neocortical, neuroscience, patient, predict, seizure, stimulation, structure, surgical, model |
is listed by: 3DVC has parent organization: University of Freiburg; Baden-Wurttemberg; Germany |
University of Freiburg; Baden-Wurttemberg; Germany | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10217 | SCR_008032 | EEG Database | 2026-09-03 05:02:56 | 0 | |||||||
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Advanced Neuroscience Imaging Research Laboratory Software Packages Resource Report Resource Website 10+ mentions |
Advanced Neuroscience Imaging Research Laboratory Software Packages (RRID:SCR_002926) | ANSIR Software | software resource, software toolkit | Research group based in the Department of Radiology of Wake Forest University School of Medicine devoted to the application of novel image analysis methods to research studies. The ANSIR lab also maintains a fully-automated functional and structural image processing pipeline supporting the image storage and analysis needs of a variety of scientists and imaging studies at Wake Forest. Software packages and toolkits are currently available for download from the ANSIR Laboratory, including: WFU Biological Parametric Mapping Toolbox, WFU_PickAtlas, and Adaptive Staircase Procedure for E-Prime. | multimodal, image, analysis, biological, parametric, mapping, voxel, linear, model, regressor, software, matlab, visualization, statistical, inference, in vivo, brain imaging, brain | has parent organization: Wake Forest School of Medicine; North Carolina; USA | NIBIB R01EB004673; NIBIB 1R03EB008670 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30033 | SCR_002926 | Advanced Neuroscience Imaging Research Software, ANSIR Laboratory Software Packages | 2026-09-03 05:04:08 | 38 | ||||||
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Brain Connectivity Toolbox Resource Report Resource Website 100+ mentions |
Brain Connectivity Toolbox (RRID:SCR_004841) | BCT | software resource, software toolkit | A large selection of complex network measures in Matlab that are increasingly used to characterize structural and functional brain connectivity datasets. Several people have contributed to the toolbox, and if you wish to contribute with a new function or set of functions, please contact Olaf Sporns. All efforts have been made to avoid errors, but users are strongly urged to independently verify the accuracy and suitability of toolbox functions for the chosen application. Please report bugs or substantial improvements. | brain, connectivity, matlab, brain network, c++, structure, function, brain connectivity, matlab, magnetic resonance, os independent, statistical operation |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Human Connectome Coordination Facility is related to: Graphtools has parent organization: Indiana University; Indiana; USA |
CSIRO ICT Centre scholarship ; J.S. McDonnell Foundation Brain NRG JSMF22002082 |
PMID:19819337 | nlx_143925 | http://www.nitrc.org/projects/bct | SCR_004841 | 2026-09-03 05:04:26 | 370 | ||||||
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KI Biobank STAGE-ADHD Resource Report Resource Website |
KI Biobank STAGE-ADHD (RRID:SCR_005921) | KI Biobank STAGE-ADHD | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 29, 2016. Study to investigate symptoms of Attention Deficit Hyperactivity Disorder (ADHD) according to DSM-IV in adults with special focus on attention deficit. Information is used from the Swedish Twin study of Adults: genes and Environment (STAGE) from the Swedish Twin Registry. ADHD-discordant and concordant samples of pairs of twins for ADHD are selected from STAGE for studies of brain structure and function with Functional Magnetic Resonance Imaging (fMRI). | adult, swedish, twin, gene, environment, brain, brain structure, brain function, fmri |
is listed by: One Mind Biospecimen Bank Listing is related to: Swedish Twin Registry has parent organization: Karolisnka Biobank |
Attention deficit-hyperactivity disorder, Normal control, Normal Twin | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_149609 | SCR_005921 | STAGE - Attention Deficit Hyperactivity Disorder, Swedish Twin study of Adults: genes and Environment - ADHD, Swedish Twin study of Adults: genes and Environment - Attention Deficit Hyperactivity Disorder | 2026-09-03 05:03:46 | 0 | ||||||
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KI Biobank - CEFALO Resource Report Resource Website 1+ mentions |
KI Biobank - CEFALO (RRID:SCR_006034) | CEFALO | biomaterial supply resource, material resource | Saliva taken from participants in a study investigating the association between environmental exposures and brain tumors in children aged 7-19 years and the interaction between these risk factors and genetic polymorphisms, which may confer susceptibility to effects of exogenous agents. Sample types: * Saliva Number of sample donors: 886 (sample collection completed) | cancer, environmental exposure, environment, brain, tumor, child, adolescent, risk factor, genetics, polymorphism, gene, exogenous agent, young human |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Brain tumor, Aging | Swedish Research Council | nlx_151434 | http://ki.se/ki/jsp/polopoly.jsp?d=29332&a=24018&l=en | SCR_006034 | 2026-09-03 05:03:46 | 1 | ||||||
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Centre for Neuro Skills Resource Report Resource Website |
Centre for Neuro Skills (RRID:SCR_006106) | CNS | assessment test provider, material resource | A topical portal and providers of brain injury rehabilitation services. Resources * Pharmacology Guide * Glossary of Brain Injury Terms * Brain Injury Research Articles * Common Brain Injury Assessment Tools / Rating Scale * Certified Continuing Education Courses * Links to Resource Sites | brain, rehabilitation, therapy | Traumatic brain injury, Brain injury | nlx_151579 | SCR_006106 | CNS - Centre for Neuro Skills, Center for Neuro Skills | 2026-09-03 05:04:15 | 0 | ||||||||
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National Alzheimer's Coordinating Center Resource Report Resource Website 50+ mentions |
National Alzheimer's Coordinating Center (RRID:SCR_007327) | NACC | biomaterial supply resource, material resource | A clinical research, neuropathological research and collaborative research database that uses data collected from 29 NIA-funded Alzheimer's Disease Centers (ADCs). The database consists of several datasets, and searches may be done on the entire database or on individual datasets. Any researcher, whether affiliated with an ADC or not, may request a data file for analysis or aggregate data tables. Requested aggregate data tables are produced and returned as soon as the queue allows (usually within 1-3 days depending on the complexity). | alzheimer's disease, brain, clinical, database, disease, human, neuropathological, neuropathology, specimen, tissue, FASEB list |
is listed by: One Mind Biospecimen Bank Listing is related to: Alzheimers Disease Genetics Consortium is related to: Alzheimers Disease Genetics Consortium is related to: National Cell Repository for Alzheimer's Disease has parent organization: University of Washington; Seattle; USA |
Alzheimer's disease, Dementing disorder, Dementia | NIH Blueprint for Neuroscience Research ; NIA U01 AG016976 |
Data are freely available to all researchers | nif-0000-00203 | SCR_007327 | National Alzheimer's Coordinating Center | 2026-09-03 05:04:23 | 54 | |||||
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IBASPM: Individual Brain Atlases using Statistical Parametric Mapping Software Resource Report Resource Website 10+ mentions |
IBASPM: Individual Brain Atlases using Statistical Parametric Mapping Software (RRID:SCR_007110) | IBASPM | software resource, software toolkit | The aim of this work is to present a toolbox for structure segmentation of structural MRI images. All programs were developed in MATLAB based on a widely used fMRI, MRI software package, SPM99, SPM2, SPM5 (Wellcome Department of Cognitive Neurology, London, UK). Other previous works have developed a similar strategy for obtaining the segmentation of individual MRI image into different anatomical structures using a standardized Atlas. Have to be mentioned the one introduced by Montreal Neurological Institute (MNI) that merges the information coming from ANIMAL (algorithm that deforms one image (nonlinear registration) to match previously labelled) and INSECT (Cerebral Tissue Classification) programs for obtaining a suitable gross cortical structure segmentation (Collins et al, 1999). Here both, nonlinear registration and gray matter segmentation processes have been performed through SPM99, SPM2, SPM5 subroutines. Three principal elements for the labeling process are used: gray matter segmentation, normalization transform matrix (that maps voxels from individual space to standardized one) and MaxPro MNI Atlas. All three are combined to yield a good performance in segmenting gross cortical structures. The programs here can be used in general for any standardized Atlas and any MRI image modality. System Requirements: 1. The IBASPM graphical user interface (GUI) runs only under MATLAB 7.0 or higher. The non-graphical version runs under MATLAB 6.5 or higher. 2. Statistical Parametrical Mapping Software SPM2, SPM5 Main Functions: * Atlasing: Main function ( This file contains spm_select script from SPM5 toolbox and uigetdir script from MATLAB 7.0 ). * Auto_Labeling : Computes individual atlas. * Create_SPAMs : Constructs Statistical Probability Anatomy Maps (SPAMs). * Create_MaxProb : Creates Maximum Probability Atlas (MaxPro) using the SPAMs previously computed. * All_Brain_Vol : Computes whole brain volume masking the brain using the segmentation files (if the segmentation files does not exist it segments). * Struct_Vol : Computes the volume for different structures based on individual Atlas previously obtained by the atlasing process. * Vols_Stats : Computes mean and standard deviation for each structure in a group of individual atlases. | segmentation, structural mri, image, label, brain, structure, volume, visualization, atlasing, anatomical structure, probability, statistics, mean, standard deviation, atlas | nlx_144301 | SCR_007110 | Individual Brain Atlases using Statistical Parametric Mapping Software (IBASPM), Individual Brain Atlases using Statistical Parametric Mapping Software | 2026-09-03 05:04:23 | 42 | |||||||||
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499 fROI atlas Resource Report Resource Website 50+ mentions |
499 fROI atlas (RRID:SCR_014756) | atlas, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 29,2023. Atlas of functional ROIs (fROIs) containing 499 regions, with extensive gray matter coverage. Atlases are available for download directly from the website. | roi, dmn, fmri, atlas, functional roi, gray matter, grey matter, brain | is related to: 90 fROI atlas | PMID:26068849 | THIS RESOURCE IS NO LONGER IN SERVICE. | SCR_014756 | Willard atlas | 2026-09-03 05:03:48 | 77 | ||||||||
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MicrocircuitDB Resource Report Resource Website |
MicrocircuitDB (RRID:SCR_014577) | data or information resource, database | A database for storing and efficiently retrieving realistic computational models of brain microcircuits and networks. The focus is on microcircuits that are based on experimentally demonstrated properties of neurons and their connectivity. | database, microcircuit, micro circuit, brain, neuron, connectivity |
works with: ModelDB works with: NeuronDB |
Researchers may contribute to this resource | SCR_014577 | 2026-09-03 05:03:44 | 0 | ||||||||||
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Drosphila Brain Lineage Atlas Resource Report Resource Website 1+ mentions |
Drosphila Brain Lineage Atlas (RRID:SCR_017507) | atlas, data or information resource, service resource | Atlas providing structure and development of Drosophila brain lineages. Used to learn about projection pattern of lineages as first step towards reconstructing and understanding all neurons. | Structure, development, Drosophila, brain, lineage, neuron, brain | has parent organization: University of California at Los Angeles; California; USA | Free, Freely available | SCR_017507 | 2026-09-03 05:04:03 | 1 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
