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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Olfactory Receptor DataBase Resource Report Resource Website 1+ mentions |
Olfactory Receptor DataBase (RRID:SCR_007830) | ORDB | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | Database of vertebrate olfactory receptors genes and proteins. It supports sequencing and analysis of these receptors by providing a comprehensive archive with search tools for this expanding family. The database also incorporates a broad range of chemosensory genes and proteins, including the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfaction receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), and fungal pheromone receptors (FPRs). ORDB currently houses chemosensory receptors for more than 50 organisms. ORDB contains public and private sections which provide tools for investigators to analyze the functions of these very large gene families of G protein-coupled receptors. It also provides links to a local cluster of databases of related information in SenseLab, and to other relevant databases worldwide. The database aims to house all of the known olfactory receptor and chemoreceptor sequences in both nucleotide and amino acid form and serves four main purposes: * It is a repository of olfactory receptor sequences. * It provides tools for sequence analysis. * It supports similarity searches (screens) which reduces duplicate work. * It provides links to other types of receptor information, e.g. 3D models. The database is accessible to two classes of users: * General public www users have full access to all the public sequences, models and resources in the database. * Source laboratories are the laboratories that clone olfactory receptors and submit sequences in the private or public database. They can search any sequence they deposited to the database against any private or public sequence in the database. This user level is suited for laboratories that are actively cloning olfactory receptors. | fungal, pheromone receptor, gene, chemosensory, chemosensory receptor, g protein-coupled receptor, olfaction receptor, protein, receptor, taste papilla receptor, vomeronasal organ receptor, olfactory receptor, nucleotide, amino acid, chemoreceptor sequence, olfactory receptor sequence, chemoreceptor, sequence |
is used by: NIF Data Federation is listed by: 3DVC is related to: Odor Molecules DataBase is related to: Integrated Manually Extracted Annotation has parent organization: Yale School of Medicine; Connecticut; USA |
Aging | Human Brain Project ; NIMH ; NIA ; NICD ; NINDS ; Multidisciplinary University Research Initiative ; National Aeronautics and Space Administration ; NIDCD RO1 DC 009977; NIDCD P01 DC 04732; NLM G08 LM05583 |
PMID:11752336 PMID:9847223 PMID:9218144 |
Public, Private, Acknowledgement requested, The community can contribute to this resource | nif-0000-03213 | SCR_007830 | Olfactory Receptors Database | 2026-08-29 11:22:56 | 4 | ||||
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rMATS Resource Report Resource Website 10+ mentions |
rMATS (RRID:SCR_023485) | software resource | Software tool to detect differential alternative splicing events from RNA-Seq data. Calculates P-value and false discovery rate that difference in isoform ratio of gene between two conditions exceeds given user-defined threshold. From RNA-Seq data can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns. Handles replicate RNA-Seq data from both paired and unpaired study design. | detection of differential alternative splicing, replicate RNA-Seq data, analysis of paired and unpaired replicates, clinical RNA-Seq datasets, genome studies, | Alfred Sloan Research Fellowship ; NIEHS R01ES024995; NIGMS R01GM088342; NIGMS R01GM105431; NINDS R01NS076631; NSF DMS1055286; NSF DMS1310391 |
PMID:25480548 | Free, Available to download, Freely available | SCR_023485 | 2026-08-29 11:28:27 | 22 | |||||||||
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Computational Neuroanatomy Group Resource Report Resource Website |
Computational Neuroanatomy Group (RRID:SCR_007150) | CNG | data or information resource, portal, software resource, topical portal | Multidisciplinary research team devoted to the study of basic neuroscience with a specific interest in the description and generation of dendritic morphology, and in its effect on neuronal electrophysiology. In the long term, they seek to create large-scale, anatomically plausible neural networks to model entire portions of a mammalian brain (such as a hippocampal slice, or a cortical column). Achievements by the CNG include the development of software for the quantitative analysis of dendritic morphology, the implementation of computational models to simulate neuronal structure, and the synthesis of anatomically accurate, large scale neuronal assemblies in virtual reality. Based on biologically plausible rules and biophysical determinants, they have designed stochastic models that can generate realistic virtual neurons. Quantitative morphological analysis indicates that virtual neurons are statistically compatible with the real data that the model parameters are measured from. Virtual neurons can be generated within an appropriate anatomical context if a system level description of the surrounding tissue is included in the model. In order to simulate anatomically realistic neural networks, axons must be grown as well as dendrites. They have developed a navigation strategy for virtual axons in a voxel substrate. | dendritic morphology, neuronal morphology, neuronal electrophysiology, mammalian brain, neural network, cell, model, morphology, network connectivity, basal ganglia, modeling software, hippocampus, hermissenda learning, caulescence, tree structure, neuron, virtual neural network, morphological class of neuron, virtual neuron, virtual brain, ca3 pyramidal cell, arborvitae, ca1 pyramidal cell, polymorphic cell, dg granule cell, axonal navigation, synaptic connectivity, neuroplasticity, neuroanatomy, neuroinformatics, computation, network model, neural circuit, cellular event, expression, ca3, ca1 pyramidal neuron, digital morphological reconstruction, digital reconstruction, dendrite, axon, neuronal tree, signaling pathway |
has parent organization: George Mason University: Krasnow Institute for Advanced Study is parent organization of: L-Measure is parent organization of: Hippocampus 3D Model |
NINDS ; NIMH ; NSF ; Human Brain Project |
nif-0000-00503 | http://krasnow.gmu.edu/cn3/index3.html | SCR_007150 | Computational Neuroanatomy Group at the Krasnow Institute for Advanced Study | 2026-08-29 11:23:02 | 0 | ||||||
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BrainML Resource Report Resource Website |
BrainML (RRID:SCR_007087) | BrainML | data or information resource, data repository, database, narrative resource, service resource, standard specification, storage service resource |
Set of standards and practices for using XML to facilitate information exchange between user application software and neuroscience data repositories. It allows for common shared library routines to handle most of the data processing, but also supports use of structures specialized to the needs of particular neuroscience communities. This site also serves as a repository for BrainML models. (A BrainML model is an XML Schema and optional vocabulary files describing a data model for electronic representation of neuroscience data, including data types, formats, and controlled vocabulary. ) It focuses on layered definitions built over a common core in order to support community-driven extension. One such extension is provided by the new NIH-supported neuroinformatics initiative of the Society for Neuroscience, which supports the development of expert-derived terminology sets for several areas of neuroscience. Under a cooperative agreement, these term lists will be made available Open Source on this site. The repository function of this site includes the following features: * BrainML models are published in searchable, browsable form. * Registered users may submit new models or new versions of existing models to accommodate data of interest. * BrainML model schema and vocabulary files are made available at fixed URLs to allow software applications to reference them. * Users can check models and/or instance documents for correct format before submitting them using an online validation service. To complement the BrainML modeling language, a set of protocols have been developed for BrainML document exchange between repositories and clients, for indexing of repositories, and for data query. |
format, development, information, mechanism, metaformat, model, neuroinformatics, neuroscience, standard, terminology, validation, vocabulary, xml, data sharing, xml schema compact syntax, xml schema, interoperability, semantics |
is used by: Neurodatabase.org has parent organization: Weill Cornell Medical College; New York; USA |
Human Brain Project ; NIMH MH/NS57153; NINDS MH/NS57153 |
Public, The community can contribute to this resource | nif-0000-21070 | http://brainml.org | SCR_007087 | BrainML.org | 2026-08-29 11:22:51 | 0 | |||||
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ModelDB Resource Report Resource Website 100+ mentions |
ModelDB (RRID:SCR_007271) | ModelDB | data or information resource, data repository, database, service resource, storage service resource | Curated database of published models so that they can be openly accessed, downloaded, and tested to support computational neuroscience. Provides accessible location for storing and efficiently retrieving computational neuroscience models.Coupled with NeuronDB. Models can be coded in any language for any environment. Model code can be viewed before downloading and browsers can be set to auto-launch the models. The model source code has to be available from publicly accessible online repository or WWW site. Original source code is used to generate simulation results from which authors derived their published insights and conclusions. | repository, collection, network, neuron, computational, neuroscience, model, simulation, neural, data |
is used by: NIF Data Federation lists: ModelRun is listed by: 3DVC is listed by: Biositemaps is listed by: Integrated Models is related to: SimToolDB is related to: NeuronDB is related to: NeuronVisio is related to: Integrated Manually Extracted Annotation is related to: Allen Institute for Brain Science has parent organization: Yale University; Connecticut; USA works with: MicrocircuitDB |
Human Brain Project ; NCI ; NIDCD P01 DC004732; NIDCD R01 DC009977; NIMH ; NINDS |
PMID:15218350 PMID:15055399 PMID:8930855 |
Free, Freely available, Acknowledgement requested | nif-0000-00004, r3d100011330 | https://doi.org/10.17616/R3P61F | SCR_007271 | Model_DB, Model Database, Model DB, Model-DB | 2026-08-29 11:22:49 | 312 | ||||
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Cognitive and Emotional Health Project: The Healthy Brain Resource Report Resource Website |
Cognitive and Emotional Health Project: The Healthy Brain (RRID:SCR_007390) | CEHP | data or information resource, database, portal, topical portal | Trans-NIH project to assess the state of longitudinal and epidemiological research on demographic, social and biologic determinants of cognitive and emotional health in aging adults and the pathways by which cognitive and emotional health may reciprocally influence each other. A database of large scale longitudinal study relevant to healthy aging in 4 domains was created based on responses of investigators conducting these studies and is available for query. The four domains are: * Cognitive Health * Emotional Health * Demographic and Social Factors * Biomedical and Physiologic Factors | healthy aging, cognitive health, demographics, longitudinal study, aging study, late adult human, cognition, emotion, adult human, longitudinal, epidemiology, psychosocial, questionnaire, social factor, physiologic factor | has parent organization: National Institutes of Health | Cognitive impairment, Emotional disorder, Aging | NIA ; NIMH ; NINDS |
nif-0000-00421 | SCR_007390 | Cognitive and Emotional Health Project (CEHP), Cognitive Emotional Health Project: The Healthy Brain, Cognitive Emotional Health Project, Cognitive and Emotional Health Project | 2026-08-29 11:22:51 | 0 | ||||||
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National NeuroAIDS Tissue Consortium Resource Report Resource Website 10+ mentions |
National NeuroAIDS Tissue Consortium (RRID:SCR_007323) | NNTC | biomaterial supply resource, brain bank, material resource, tissue bank | Collects, stores, and distributes samples of nervous tissue, cerebrospinal fluid, blood, and other tissue from HIV-infected individuals. The NNTC mission is to bolster research on the effects of HIV infection on human brain by providing high-quality, well-characterized tissue samples from patients who died with HIV, and for whom comprehensive neuromedical and neuropsychiatric data were gathered antemortem. Researchers can request tissues from patients who have been characterized by: * degree of neurobehavioral impairment * neurological and other clinical diagnoses * history of drug use * antiretroviral treatments * blood and CSF viral load * neuropathological diagnosis The NNTC encourages external researchers to submit tissue requests for ancillary studies. The Specimen Query Tool is a web-based utility that allows researchers to quickly sort and identify appropriate NNTC specimens to support their research projects. The results generated by the tool reflect the inventory at a previous time. Actual availability at the local repositories may vary as specimens are added or distributed to other investigators. | human immunodeficiency virus, nervous tissue, cerebral spinal fluid, blood, tissue, brain, neuromedical data, neuropsychiatric data, tissue, plasma, peripheral blood mononuclear cell, serum, urine, spinal cord, nervous tissue, pituitary gland, trigeminal ganglia, dorsal root ganglion, peripheral nerve, lymph node, liver, spleen, adipose tissue, bone marrow, muscle, hair, heart, thymus, kidney, lung, eye, brain, ante-mortem, post-mortem, normal, subsyndromic, minor cognitive motor disorder, hiv - associated dementia, cytomegalovirus encephalitis, neurological impairment, traumatic brain injury, neurocognitive disease, frozen, fixed, aids, one mind tbi, asymptomatic neurocognitive impairment, minor cognitive disorder, gene array, snp |
is listed by: One Mind Biospecimen Bank Listing is related to: Manhattan HIV Brain Bank is related to: CHARTER - CNS HIV Antiretroviral Therapy Effects Research |
Human immunodeficiency virus, Neurocognitive disease, Normal, Subsyndromic, Minor Cognitive Motor Disorder, HIV - Associated Dementia, Cytomegalovirus Encephalitis, Neurological impairment, Infectious disease | NIMH ; NINDS ; NIH Blueprint for Neuroscience Research |
Public: The NNTC encourages external researchers to submit tissue requests for ancillary studies. | nif-0000-00193 | SCR_007323 | nntc.org, nntc | 2026-08-29 11:23:08 | 13 | |||||
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MNE-BIDS Resource Report Resource Website 1+ mentions |
MNE-BIDS (RRID:SCR_018766) | MNE-BIDS | data analysis software, data management software, data processing software, software application, software resource, software toolkit | Software Python package to link Brain Imaging Data Structure and MNE-Python software for analyzing neurophysiology data with goal to make analyses faster to code, more robust to errors, and easily shareable with colleagues. Provides programmable interface for BIDS datasets in electrophysiology with MNE-Python. Used for organizing electrophysiological data into BIDS format and facilitating their analysis. | Data structure, brain imaging, Minimum Norm current Estimates, M/EEG data, neurophysiology data analysis, BIDS dataset, electrophysiology, BIDS format organization |
is related to: MNE software works with: Brain Imaging Data Structure (BIDs) |
Academy of Finland ; Bezos Family Foundation ; Google Summer of Code 2019 ; NIMH R24 MH114705; NINDS R01 NS10 4585; Simms Mann Foundation |
DOI:10.21105/joss.01896 | Free, Available for download, Freely available | https://mne.tools/mne-bids/stable/index.html | SCR_018766 | Minimum Norm current Estimates - Brain Imaging Data Structure | 2026-08-29 11:26:12 | 5 | |||||
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powereQTL Resource Report Resource Website 1+ mentions |
powereQTL (RRID:SCR_021653) | data analysis software, data analytics software, data processing software, software application, software resource, software toolkit | Software R package and shiny application for sample size and power calculation of bulk tissue and single-cell eQTL analysis. | sample size calculation, bulk tissue, calculation, single-cell eQTL analysis | is listed by: CRAN | American Parkinson Disease Association ; Michael J. Fox Foundation for Parkinson Research ; NINDS R01 NS115144; NINDS U01 NS095736; NINDS U01 NS10 0603; NINDS U01 NS120637 |
DOI:10.1093/bioinformatics/btab385 | Free, Available for download, Freely available | https://cran.r-project.org/web/packages/powerEQTL/index.html, https://github.com/sterding/powerEQTL | SCR_021653 | 2026-08-29 11:28:16 | 3 | |||||||
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Minian Resource Report Resource Website 1+ mentions |
Minian (RRID:SCR_022601) | data analysis software, data processing software, software application, software resource, software toolkit | Software miniscope analysis pipeline that requires low memory and computational demand so it can be run without specialized hardware. Offers interactive visualization that allows users to see how parameters in each step of pipeline affect output. | Miniscope, analysis pipeline, calcium imaging, mouse, Visualization, OpenBehavior |
is listed by: OpenBehavior has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
NIA F32AG067640; NIBIB R01EB028166; NIDA R21 DA049568; NIMH DP2MH122399; NIMH R01MH120162; NINDS R01 NS116357; NINDS R03 NS111493; NINDS U01NS094286; NSF 1700408; NSF 1926800; NSF 2046583 |
PMID:35642786 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/minian/ | SCR_022601 | 2026-08-29 11:28:20 | 6 | |||||||
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nTracer Resource Report Resource Website |
nTracer (RRID:SCR_023032) | data processing software, image processing software, software application, software resource | Software tool as plug-in for ImageJ software. Used for tracing microscopic images. | tracing microscopic images | is a plug in for: ImageJ | Michigan miBRAIN initiative ; Multidisciplinary University Research Initiative Army Research Office ; NIAID R01AI130303; NIGMS F31GM116517; NIGMS P41GM10371; NIH Office of the Director DP2OD006514; NIMH P50MH09427; NIMH R01MH110932; NINDS R01NS076467; NINDS R01NS095367; NINDS U01NS090449; NSF NSF-1707316 |
PMID:30715234 | Free, Available for download, Freely available | SCR_023032 | 2026-08-29 11:27:52 | 0 | ||||||||
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CReATE Resource Report Resource Website 1+ mentions |
CReATE (RRID:SCR_016436) | CReATE | biospecimen repository, consortium, data or information resource, material storage repository, organization portal, portal, service resource, storage service resource | Biorepository of samples collected from patients with ALS, ALS-frontotemporal dementia (ALS-FTD), primary lateral sclerosis (PLS), progressive muscular atrophy (PMA), hereditary spastic paraplegia (HSP) and multisystem proteinopathy (MSP). Used by Consortium members and the scientific community to advance therapeutic development through study of the relationship between clinical phenotype and underlying genotype, and also through the discovery and development of biomarkers. | sample, collected, patient, ALS, PLS, PMA, HSP, MSP, therapeutic, development, biomarker | is affiliated with: RDCRN Patient Contact Registry | amyotrophic lateral sclerosis, sclerosis, muscular atrophy, hereditary spastic paraplegia, multisystem proteinopathy | NCATS ; NINDS |
Registration required | SCR_016436 | Clinical Research in ALS and Related Disorders for Therapeutic Development | 2026-08-29 11:25:17 | 2 | ||||||
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LINCS Project Resource Report Resource Website 50+ mentions |
LINCS Project (RRID:SCR_016486) | LINCS | consortium, data or information resource, database, organization portal, portal, project portal | Project to create network based understanding of biology by cataloging changes in gene expression and other cellular processes when cells are exposed to genetic and environmental stressors. Program to develop therapies that might restore pathways and networks to their normal states. Has LINCS Data Coordination and Integration Center and six Data and Signature Generation Centers: Drug Toxicity Signature Generation Center, HMS LINCS Center, LINCS Center for Transcriptomics, LINCS Proteomic Characterization Center for Signaling and Epigenetics, MEP LINCS Center, and NeuroLINCS Center. | data integration, network biology, gene expression, L1000, MCF10A, MEMA, P100, LINCS program, LINCS project, systems biology, systems pharmacology, FASEB list |
is related to: Drug Gene Budger is related to: LINCS Joint Project - Breast Cancer Network Browser is related to: piNET |
cancer, heart disease, neurodegenerative disorder | NHGRI U54 HG008097; NHGRI U54 HG008098; NHGRI U54 HG008100; NHLBI U54 HL127365; NHLBI U54 HL127366; NHLBI U54 HL127624; NIH Common Fund ; NINDS U54 NS091046 |
PMID:29199020 | Free, Freely available | SCR_016487 | SCR_016486 | LINCS, Library of Integrated Network based Cellular Signatures, LINCS Program | 2026-08-29 11:25:46 | 56 | ||||
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MARRVEL Resource Report Resource Website 10+ mentions |
MARRVEL (RRID:SCR_016871) | MARRVEL | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | Web tool to search multiple public variant databases simultaneously and provide a unified interface to facilitate the search process. Used for integration of human and model organism genetic resources to facilitate functional annotation of the human genome. Used for analysis of human genes and variants by cross-disciplinary integration of records available in public databases to facilitate clinical diagnosis and basic research. | integration, database, model, genetic, resource, functional, annotation, genome, data, analysis, dataset, rare, variant, exploration, bio.tools |
uses: OMIM uses: ClinVar uses: DECIPHER uses: Geno2MP uses: Database of Genomic Variants is used by: Hypothesis Center is listed by: bio.tools is listed by: Debian |
Baylor College of Medicine Medical Scientist Training Program ; Belfer Foundation ; CPRIT RP170387; Houston Endowment ; Huffington Foundation ; NCI P30 CA06516; NCRR R24 RR032668; NHGRI U01 HG007709; NIGMS R01 GM067761; NIGMS R01 GM067858; NIGMS R01 GM084947; NIGMS R01 GM120033; NIH Office of the Director R24 OD021997; NIH Office of the Director R24 OD022005; NINDS 1U54NS093793; NINDS U54 NS093793; NSF DMS 1263932; Simons Foundation ; T T Chao Family Foundation ; The Robert and Janice McNair Foundation |
PMID:28502612 | Free, Public, Freely available | biotools:marrvel | https://bio.tools/marrvel | SCR_016871 | Model organism Aggregated Resources for Rare Variant ExpLoration | 2026-08-29 11:25:52 | 25 | ||||
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PAGODA Resource Report Resource Website |
PAGODA (RRID:SCR_017099) | data analysis software, data processing software, software application, software resource | Software tool for analyzing transcriptional heterogeneity to detect statistically significant ways in which measured cells can be classified. Used to resolve multiple, potentially overlapping aspects of transcriptional heterogeneity by testing gene sets for coordinated variability among measured cells. | heterogeneity, transcriptional, detect, statistically, cell, classified, overlapping, gene, set, coordinated, variability |
is related to: pagoda2 has parent organization: Harvard University; Cambridge; United States |
Ellison Medical Foundation ; NIA T32 AG00216; NIMH U01 MH098977; NINDS R01 NS084398; NSF DGE1144152; NSF NSF-14-532 |
PMID:26780092 | Free, Available for download, Freely available | http://hms-dbmi.github.io/scde/index.html | SCR_017099 | Pathway And Gene set OverDispersion Analysis, pagoda | 2026-08-29 11:25:56 | 0 | ||||||
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seqNMF Resource Report Resource Website 1+ mentions |
seqNMF (RRID:SCR_017068) | data analysis software, data processing software, software application, software resource | Software tool for unsupervised discovery of sequential structure. Used to detect sequences in neural data generated by internal behaviors, such as animal thinking or sleeping. Used for unsupervised discovery of temporal sequences in high dimensional datasets in neuroscience without reference to external markers. | sequence, structure, high, dimention, dataset, neuroscience, repeated, sequential, pattern, data | has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; | Department of Energy ; Labor and Economic Growth Computational Science Graduate Fellowship ; G Harold and Leila Y. Mathers Foundation ; NIBIB T32 EB019940; NIDCD R01 DC009183; NIMH R25 MH062204; NINDS U19 NS10 4648; Simons Foundation Simons Collaboration for the Global Brain ; U.S. Department of Defense NDSEG Fellowship program |
PMID:30719973 | Free, Available for download, Freely available | SCR_017068 | 2026-08-29 11:25:55 | 6 | ||||||||
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fMRIPrep Resource Report Resource Website 1000+ mentions |
fMRIPrep (RRID:SCR_016216) | data processing software, image processing software, software application, software resource | Software tool as robust preprocessing pipeline for functional MRI.Used for preprocessing of diverse fMRI data. | Processing data, fmri, neuroimaging, coregistration, normalization, unwarping, noise, component, extraction, segmentation, skullstripping |
uses: Nipype has parent organization: Poldracklab Portal works with: NiPoppy |
Laura and John Arnold Fundation ; NIDCR UL1 DE019580; NIMH PL1 MH083271; NIMH RL1 DA024853; NIMH RL1 MH083268; NIMH RL1 MH083269; NIMH RL1 MH083270; NINDS PL1 NS062410; NLM RL1 LM009833 |
PMID:30532080 PMID:32514178 |
Free, Available for download, Freely available | https://zenodo.org/record/1219187#.WuDlO4jwZPY | SCR_016216 | fMRIPrep, FMRI PREP | 2026-08-29 11:25:35 | 1457 | ||||||
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Convert MNI coordinates to or from XYZ Resource Report Resource Website |
Convert MNI coordinates to or from XYZ (RRID:SCR_000406) | Convert MNI coordinates to or from XYZ | data processing software, software application, software resource | Input either normalized MNI coordinates from a 3D image, or input real world XYZ matrix coordinates, and this code will convert coordinates of one type to the other. | magnetic resonance | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Berlin Institute of Health ; German Research Agency ; NINDS K23NS083741; Prof. Klaus Thiemann Foundation ; Stiftung Charité |
Free, Available for download, Freely available | nlx_155600 | SCR_000406 | 2026-08-29 11:28:31 | 0 | |||||||
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Harvard - Oxford Cortical Structural Atlas Resource Report Resource Website 100+ mentions |
Harvard - Oxford Cortical Structural Atlas (RRID:SCR_001476) | Atlases | atlas, data or information resource, reference atlas | Probabilistic atlases covering 48 cortical and 21 subcortical structural areas, derived from structural data and segmentations kindly provided by the Harvard Center for Morphometric Analysis. T1-weighted images of 21 healthy male and 16 healthy female subjects (ages 18-50) were individually segmented by the CMA using semi-automated tools developed in-house. The T1-weighted images were affine-registered to MNI152 space using FLIRT (FSL), and the transforms then applied to the individual labels. Finally, these were combined across subjects to form population probability maps for each label. Segmentations used to create these atlases were provided by: David Kennedy and Christian Haselgrove, Centre for Morphometric Analysis, Harvard; Bruce Fischl, the Martinos Center for Biomedical Imaging, MGH; Janis Breeze and Jean Frazier from the Child and Adolescent Neuropsychiatric Research Program, Cambridge Health Alliance; Larry Seidman and Jill Goldstein from the Department of Psychiatry of Harvard Medical School. | male, female, t1-weighted image, cortical, subcortical, neuroanatomy, cortex |
has parent organization: Harvard University; Cambridge; United States is a plug in for: FSL |
Healthy | NCRR R01 RR16594-01A1; NIMH K01 MH01798; NIMH K08 MH01573; NINDS R01 NS052585-01 |
Free, Freely available | nlx_152707 | SCR_001476 | , Harvard Oxford Cortical Structural Atlas, Harvard-Oxford cortical and subcortical structural atlases, Harvard Oxford Atlas | 2026-08-29 11:28:39 | 154 | |||||
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IMPACT: International Mission for Prognosis and Analysis of Clinical Trials in TBI Resource Report Resource Website 1+ mentions |
IMPACT: International Mission for Prognosis and Analysis of Clinical Trials in TBI (RRID:SCR_000539) | IMPACT | data or information resource, portal, project portal | Project focused on advancing knowledge of prognosis, trial design and treatment in Traumatic Brain Injury. IMPACT has developed and validated prognostic models for classification and characterization of TBI series, and participated in development of standardization of data collection in TBI studies. | traumatic brain injury, common data element, clinical research, treatment, head injury, data set, randomized controlled trial, one mind tbi, brain, clinical trial | is parent organization of: IMPACT Prognostic Calculator | Traumatic brain injury | NINDS NS 042691 | nlx_143883 | SCR_000539 | International Mission for Prognosis and Analysis of Clinical Trials in TBI, TBI-IMPACT | 2026-08-29 11:28:38 | 3 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
