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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
High-field, ultra-sensitive system used by researchers for deep structural, dynamic, and metabolic analyses of complex molecules. Console: Avance III HD; Magnet: Aeon; Field Strength: 800 MHz Wide-bore; Software: TopSpin 3.8 on Alma 9.4; Probe: 3.2mm Efree HCN MAS; 3.2mm HXY MAS; 1.9mm HCN MAS; 1.3mm HCN MAS; 0.7mm HCND ultra-fast MAS.
Proper citation: Bruker: Avance III HD Aeon 800 MHz Wide-Bore NMR Spectrometer (RRID:SCR_028513) Copy
https://github.com/malonge/RagTag
Collection of software tools for scaffolding and improving modern genome assemblies. Reference-based scaffolder. Used for fast and flexible genome assembly scaffolding and improvement.
Proper citation: RagTag (RRID:SCR_027293) Copy
https://github.com/goehringlab/saibr_fiji_plugin
Software application as platform independent protocol and FIJI plug-in to correct for autofluorescence using standard filter sets and illumination conditions. Spectral autofluorescence correction method based on simple 2- or 3-Channel images implemented in Python and Fiji. Used for performing spectral autofluorescence correction on biological images.
Proper citation: SAIBR (RRID:SCR_024804) Copy
https://reporter.nih.gov/search/J9I0qF9ZPEOt0-NUv58z3w/project-details/10334632
Project portal for generating recombinant NWM proteins, producing mouse monoclonal antibodies against New World Monkeys, validating immunological assays using these reagents, and distributing reagents and related scientific information to interested investigators.
Proper citation: Development of Immunological Reagents for the Identification of New World Monkey Biomarkers (RRID:SCR_024982) Copy
https://reporter.nih.gov/search/_aAio3ypGUKO5wpvQTzMyg/project-details/10598105
Portal for Hybrid Rat Diversity Program with goal to extend the use of rat models for clinical translation through establishing animal resource and genomic dataset to facilitate the translation of laboratory research to clinical relevance. Specifically, the Hybrid Rat Diversity Panel resource provides the research community with foundation for systems genetics and tool for forward genetics.
Proper citation: Hybrid Rat Diversity Program (RRID:SCR_024983) Copy
https://reporter.nih.gov/search/hvpwEnhrckme3hBllHNhng/project-details/10023321
This national resource was created to provide neuroscience community with access to reagents, training and facilities that are necessary to use neurotropic viruses as transneuronal tracers.
Proper citation: Center for Neuroanatomy with Neurotropic Viruses (RRID:SCR_024984) Copy
https://github.com/KummerLab/SEQUIN
Analysis software for identification of synaptic loci from 3D image datasets.
Proper citation: SEQUIN:Synaptic Evaluation and QUantification by Imaging Nanostructure (RRID:SCR_026029) Copy
https://cami.northwestern.edu/
Provides access to range of preclinical imaging modalities and support services. These include MRI, nuclear imaging (PET, SPECT, and CT), in vivo bioluminescence and fluorescence imaging, animal housing and prep spaces, and tissue culture. Image analysis services are available, as are software packages (JIM, Amira, Matlab) and a workstation for users to perform their own data analysis. Imaging services can be provided for investigators' own animal models, or animal models can be supplied by the Developmental Therapeutics Core.
Proper citation: Northwestern University Center for Advanced Molecular Imaging Core Facility (RRID:SCR_021192) Copy
https://research.med.psu.edu/core-facilities/zebrafish/
Provides Penn State research community with modern, centralized facility for housing, breeding and performing experiments with zebrafish.Provides physical and intellectual infrastructure for investigators whose research can benefit from use of zebrafish as model system.
Proper citation: Penn State Hershey College of Medicine Zebrafish Functional Genomics Core Facility (RRID:SCR_021199) Copy
https://ibsc.ucsc.edu/facilities/microscopy
Core facility affiliated with Institute for Biology of Stem Cells.Provides imaging instrumentation to biology research community including personalized assistance on various aspects of imaging.Offers assistance in experimental design,training on shared microscopes, image visualization and image analysis.
Proper citation: University of California at Santa Cruz Life Sciences Microscopy Center Core Facility (RRID:SCR_021135) Copy
https://med.nyu.edu/research/scientific-cores-shared-resources/applied-bioinformatics-laboratories
Core provides computational analysis for high throughput genomic data, including but not limited to, next generation sequencing data. Our mission is to accelerate scientific discoveries by guiding experimental design, performing robust data quality assessment, and carrying out comprehensive computational analyses. Registration to iLab required.
Proper citation: New York University Grossman School of Medicine Applied Bioinformatics Laboratories Facility (RRID:SCR_019178) Copy
https://medschool.cuanschutz.edu/colorado-cancer-center/research/shared-resources/animal-imaging
Enables noninvasive imaging of animal models of human disease. Provides access and training on state-of-the-art animal scanners (MRI, CT, optical, PET/SPECT) for live imaging on rodents, perfoms all animal handling and assist with image analysis to establish imaging biomarkers.
Proper citation: University of Colorado Anschutz Medical Campus Cancer Center Animal Imaging Shared Resource Core Facility (RRID:SCR_021980) Copy
Provides services including sequencing library preparation and sequencing on Illumina MiSeq and NovaSeq 6000 platforms. Supports single cell sequencing on 10X Genomics Chromium Controller. Provides Illumina Infinium Beadchips, which includes variety of whole genome genotyping arrays as well as Infinium MethylationEPIC BeadChip.
Proper citation: University of California at San Diego Institute for Genomic Medicine Genomics Center Core Facilitiy (RRID:SCR_022740) Copy
Supports leading edge research with free access to advanced computing hardware and software.
Proper citation: University of Pittsburgh Center for Research Computing Core Facility (RRID:SCR_022735) Copy
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