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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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CIBERSORT Resource Report Resource Website 1000+ mentions |
CIBERSORT (RRID:SCR_016955) | data analytics software, software application, software resource | Software tool to provide an estimation of the abundances of member cell types in a mixed cell population, using gene expression data. Used for characterizing cell composition of complex tissues from their gene expression profiles, large scale analysis of RNA mixtures for cellular biomarkers and therapeutic targets. | estimation, abundance, cell, type, mixed, population, gene, expression, data, tissue, complex, analysis, RNA, biomarker, therapeutic, target, bio.tools |
is listed by: Debian is listed by: bio.tools has parent organization: Stanford University; Stanford; California |
B&J Cardan Oncology Research Fund ; Damon Runyon Cancer Research Foundation ; Doris Duke Charitable Foundation ; Ludwig Institute for Cancer Research ; NCI T32 CA09302; NCI U01 CA154969; NIAID U19 AI090019; Siebel Stem Cell Institute ; Thomas and Stacey Siebel Foundation ; US Department of Defense |
PMID:25822800 | Not freely available for download or distribution, Available for non commercial users, Registration required | biotools:CIbERSORt | https://bio.tools/CIBERSORT | SCR_016955 | 2026-09-12 01:02:54 | 1908 | ||||||
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Mutant Mouse Resource and Research Center - Jackson Laboratory Resource Report Resource Website 10+ mentions |
Mutant Mouse Resource and Research Center - Jackson Laboratory (RRID:SCR_016446) | MMRRC JAX, JAX MMRRC, JAX MMR | biomaterial supply resource, material resource | Center for mutant mouse research and distribution. The objectives of the JAX MMRRC are to: identify and evaluate biomedically-significant mice, import/acquire and archive mouse strains, distribute mouse strains, and operate a control program to ensure genetic stability. | mouse, mutation, clinical, research, biomedicine, genetics, gene, strain | is organization facet of: Mutant Mouse Resource and Research Center | NIH Office of the Director U42 OD010921 | SCR_016446 | JAX Mutant Mouse Resource and Research Center, Mutant Mouse Resource and Research Center - JAX, Jackson Laboratory MMRRC, Jackson Laboratory Mutant Mouse Resource and Research Center | 2026-09-12 01:02:54 | 23 | ||||||||
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KI Biobank - HARMONY Resource Report Resource Website 1+ mentions |
KI Biobank - HARMONY (RRID:SCR_008884) | HARMONY | biomaterial supply resource, material resource | A twin study characterizing the importance of genetic factors for dementia and using discordant twin pairs to study other putative risk factors which control for genetic propensity to develop the disease. Molecular genetic studies have identified a number of mutations and other markers associated with early age of onset Alzheimer''''s disease. However, most cases of late age of onset dementia are considered sporadic, that is, without a clear genetic basis. Twin studies provide a unique opportunity to characterize the importance of genetic factors for dementia. Discordant twin pairs additionally provide the opportunity to study other putative risk factors which controlling for genetic propensity to develop the disease. In the first wave of the Study of Dementia in Swedish Twins, all SATSA twins born before 1935 have been screened for dementia symptoms. Over 190 suspects have been identified. This pilot study has been expanded to the entire registry in the study known as HARMONY. All twins aged 65 and older were invited to participate in a computer assisted telephone screening interview. A total of 13,519 individuals completed the interview (response rate = 75.9%). Dementia screening was based on the TELE, which includes the 10-item MSQ, other cognitive items (counting backwards, recalling three words, and similarities), and questions about health and daily functioning; or on Blessed scores obtained from a proxy interview. Among those screened, 1565 were positive for suspicion of dementia and were referred for complete clinical evaluation by a physician and a nurse. Once the preliminary in-person evaluation suggested that the suspected case was demented, the twin partner was also invited for an identical clinical work-up. Response rate for clinical evaluations is 71.4%. Approximately half of those visited for evaluation have been diagnosed as demented according to DSM-IV criteria, of which two-thirds have Alzheimer''''s disease. An extensive assessment of probable risk exposure is also included. Longitudinal follow-up is yet another feature of the study. Association studies with candidate genes are also being performed. Types of samples * DNA Number of sample donors * 1154 (sample collection completed) | interview, late adult human, clinical evaluation, association study, candidate gene, gene, risk factor, twin, longitudinal |
is listed by: One Mind Biospecimen Bank Listing is related to: Swedish Twin Registry is related to: KI Biobank - SATSA has parent organization: Karolisnka Biobank |
Dementia, Alzheimer''''s disease, Discordant twin, Aging | NIH | nlx_151298 | http://ki.se/en/meb/dementia-in-swedish-twins-harmony | SCR_008884 | Dementia in Swedish Twins (HARMONY) | 2026-09-12 01:02:38 | 2 | |||||
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HAPLO 2 Resource Report Resource Website 1+ mentions |
HAPLO 2 (RRID:SCR_009059) | HAPLO 2 | software application, software resource | Software application that estimates frequencies of multi-site haplotypes using the EM algorithm (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, dec vax | is listed by: Genetic Analysis Software | nlx_154040 | SCR_009059 | 2026-09-12 01:02:39 | 1 | |||||||||
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Swedish Twin Registry Resource Report Resource Website 1+ mentions |
Swedish Twin Registry (RRID:SCR_008883) | STR | patient registry, people resource | The Swedish Registry was established in the 1960s to study how smoking affects our health. Then little was known about the dangers of smoking. There is, at present, information on approximately 85 000 twin pairs, both monozygotic and dizygotic. As described by Lichtenstein et al., 2002, Pedersen et al., 2002 and Lichtenstein et al., 2006, the Swedish Twin Registry (STR) is the largest and most comprehensive twin registry in the world. Founded in 1961, the registry covers all like-sexed twin births since 1886, and all twin births (like- and unlike-sexed) since 1906. There are currently 89,000 pairs of twins registered, of which both members of 65,000 pairs are alive, with regular updates concerning vital status, addresses, hospital discharges, tumors, and causes of death, through subscriptions to national registries. Furthermore, there is extensive epidemiological data (exposures, symptoms and disease through questionnaires or interviews) on all pairs born 1986 or earlier, for most individuals involving 30 year baseline to follow-up information. Furthermore, data from the cohort of twins born since 1991 have been or will be contacted with a telephone interview with the parents of twins as they turn 9 (CATSS). Because the STR is an (inter)national resource, we are receptive to collaboration academic and industry-based researchers. Regardless of the type of research all potential collaborations or data access agreements must be first reviewed Steering Committee of the STR. | zygosity, age, sex, education, monozygotic, dizygotic, child, adolescent, adult, tobacco, nicotine, gene, environment |
is used by: KI Biobank - STAR is used by: KI Biobank - SATSA is related to: KI Biobank is related to: KI Biobank - KOL is related to: KI Biobank STAGE-ADHD is related to: KI Biobank - EuroClot is related to: KI Biobank - Economical Behavior is related to: CATSS - Child and Adolescent Twin Study in Sweden is related to: DOGSS is related to: KI Biobank - SALTY is related to: KI Biobank - STAGE is related to: KI Biobank - Parkinson is related to: KI Biobank - HARMONY is related to: Twin Study of Child and Adolescent Development - TCHAD is related to: KI Biobank - TwinGene has parent organization: Karolinska Institute; Stockholm; Sweden |
Twin, Smoking, Aging | Collaboration: Receptive to collaboration academic and industry-based researchers. Regardless of the type of research all potential collaborations or data access agreements must be first reviewed Steering Committee of the STR. | nlx_151292 | http://ki.se/ki/jsp/polopoly.jsp?d=9610&l=en | SCR_008883 | 2026-09-12 01:02:38 | 6 | ||||||
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UNPHASED Resource Report Resource Website 100+ mentions |
UNPHASED (RRID:SCR_009056) | UNPHASED | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A suite of programs for association analysis of multilocus haplotypes from unphased genotype data. These include TDTPHASE for case-parent trios, COCAPHASE for case/control data, QTPHASE for quantitative traits in unrelateds, PDTPHASE for general pedigrees, and QPDTPHASE for quantitative traits in general pedigrees. Features include global and individual haplotype tests, main effects and conditional tests, grouping of rare haplotypes, pairwise comparisons of haplotype risk, flexible permutation procedures and calculation of LD measures. | gene, genetic, genomic, c++, java, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | PMID:10739137 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154037 | http://www.mrc-bsu.cam.ac.uk/personal/frank/software/unphased/ | SCR_009056 | 2026-09-12 01:02:39 | 125 | ||||||
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POWER Resource Report Resource Website 500+ mentions |
POWER (RRID:SCR_009057) | POWER | software application, software resource | Windows-based program for computation of sample size and power for binary outcome studies (case-control and cohort studies) based on a logistic-like regression model with one covariate or two covariates (e.g., gene-exposure interactions). (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-window | is listed by: Genetic Analysis Software | nlx_154038 | http://dceg.cancer.gov/POWER/ | SCR_009057 | 2026-09-12 01:02:39 | 602 | ||||||||
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JENTI Resource Report Resource Website |
JENTI (RRID:SCR_009053) | JENTI | software application, software resource | An efficient tool for mining complex inbred genealogies that identify clusters of individuals sharing the same expected amount of relatedness is described. Additionally it allows for the reconstruction of sub-pedigrees suitable for genetic mapping in a systematic way. (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154033 | SCR_009053 | 2026-09-12 01:02:39 | 0 | |||||||||
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COMBIN Resource Report Resource Website |
COMBIN (RRID:SCR_009050) | COMBIN | software application, software resource | Software application designed for the construction of highly saturated linkage maps, based on BC1, DH, Radiation Hybrid or CP (CrossPollinators) data sets. F2 is not supported. (entry from Genetic Analysis Software) | gene, genetic, genomic, visual basic 5, ms-windows, (95/98/nt) | is listed by: Genetic Analysis Software | nlx_154025 | http://www.dpw.wau.nl/pv/pub/combin/ | SCR_009050 | 2026-09-12 01:02:39 | 0 | ||||||||
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ARLEQUIN Resource Report Resource Website 5000+ mentions |
ARLEQUIN (RRID:SCR_009051) | ARLEQUIN | software application, software resource | An exploratory population genetics software environment able to handle large samples of molecular data (RFLPs, DNA sequences, microsatellites), while retaining the capacity of analyzing conventional genetic data (standard multi-locus data or mere allele frequency data). (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, (95/98/nt/2000/xp) | is listed by: Genetic Analysis Software | nlx_154029 | SCR_009051 | this software is about the study of genetic polymorphism.), a character of the Italian Commedia dell''Arte. He has many aspects, but can switch among them very easily according to needs and necessities. Similarly, (French translation of Arlecchino | 2026-09-12 01:02:39 | 5656 | ||||||||
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GRONLOD Resource Report Resource Website |
GRONLOD (RRID:SCR_009049) | GRONLOD | software application, software resource | Conversion programs from LINKAGE files are available. The program uses peeling and can employ nested conditioning. There is an automatic peeling program that will unravel (multiple) loops. Alleles do not need to be recoded, so real allele sizes can be used. Genotype probabilities for a chosen person can be calculated for purposes of genetic risk calculation. Later versions include one for calculations using linked markers and mutations and mosaicism, made by Martin van der Meulen. A symbolic versions will generate the formula to compute the pedigree likelihood. (entry from Genetic Analysis Software) | gene, genetic, genomic, prolog, ms-windows, (3.1/95/nt) | is listed by: Genetic Analysis Software | nlx_154024 | SCR_009049 | GRONingen university LOR score calculation | 2026-09-12 01:02:39 | 0 | ||||||||
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KI Biobank - EXT Resource Report Resource Website |
KI Biobank - EXT (RRID:SCR_008875) | KI Biobank - EXT | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 29, 2016. The aim of EXT (extinction) is to investigate the relation between specific genetic variations and cognitive control process in fear. Blood samples will be collected from about 300 healthy, young individuals (age 18-35). | genetic variation, cognitive control, fear, healthy, early adult, gene |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Karolisnka Biobank |
Healthy, Aging | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_149601 | SCR_008875 | KI Biobank - Extinction | 2026-09-12 01:02:38 | 0 | ||||||
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SNP ASSISTANT Resource Report Resource Website |
SNP ASSISTANT (RRID:SCR_009048) | SNP ASSISTANT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application for SNP data managing, import & export from linkage format, data validation, pairwise LD calculation and visualisation, case-control and TDT tests, visual comparison of two datasets, relationships testing. Suitable for large projects. | gene, genetic, genomic, c++, ms-windows, (95 and newer) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154023 | SCR_009048 | 2026-09-12 01:02:39 | 0 | ||||||||
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PEDIGREEQUERY Resource Report Resource Website 1+ mentions |
PEDIGREEQUERY (RRID:SCR_009041) | PEDIGREEQUERY | software application, software resource | Software application that allows drawing pedigrees with a difficult structure, those containing consanguinity loops, and those individuals with multiple mates or several related families (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154007, biotools:pedcut | https://bio.tools/pedcut | SCR_009041 | 2026-09-12 01:02:39 | 1 | ||||||||
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PATH Resource Report Resource Website 100+ mentions |
PATH (RRID:SCR_009042) | PATH | software application, software resource | Web application to investigate gene-gene interactions in genetic association studies designed to: 1. Interface your SNP data with biological information from several online bioinformatics databases. 2. Generate biologically plausible hypotheses for testing gene-gene interactions. 3. Select a subset of SNPs and conduct SNP-SNP interaction tests. 4. Store analysis results. 5. Explore analysis results through interactive plots and summary tables. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, ms-windows, linux, FASEB list | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154015 | SCR_009042 | 2026-09-12 01:02:39 | 253 | ||||||||
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FASTSLINK Resource Report Resource Website 10+ mentions |
FASTSLINK (RRID:SCR_008664) | FASTSLINK | software application, software resource | Software application that is a faster version of SLINK (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is related to: SLINK is related to: SUP |
nlx_154312, biotools:snpcaller | https://bio.tools/snpcaller | SCR_008664 | faster SLINK | 2026-09-12 01:02:38 | 12 | |||||||
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GENEPI.JAR Resource Report Resource Website |
GENEPI.JAR (RRID:SCR_008782) | GENEPI.JAR | software application, software resource | A set of Java programs for genetic epidemiology analysis (entry from Genetic Analysis Software) | gene, genetic, genomic, java, web-based | is listed by: Genetic Analysis Software | nlx_154336 | http://bioinformatics.med.utah.edu/~alun/software/index.html | SCR_008782 | JPSGCS | 2026-09-12 01:02:38 | 0 | |||||||
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HAPLOVISUAL Resource Report Resource Website |
HAPLOVISUAL (RRID:SCR_009073) | HAPLOVISUAL | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154068 | SCR_009073 | 2026-09-12 01:02:39 | 0 | |||||||||
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FAMHAP Resource Report Resource Website 10+ mentions |
FAMHAP (RRID:SCR_009070) | FAMHAP | software application, software resource | Software application for haplotype association analysis of unphased genotype data. It can be used both for population data (case-control) and nuclear family data. The program is optimized for haplotype frequency estimation with the EM-algorithm for many markers. FAMHAP provides a method which searches for potential genotyping errors and several tests for haplotype-based association analysis. Particular emphasis is on Monte-Carlo simulations, which are necessary in the context of haplotype association, where asymptotic theory often fails, and in the context of multiple testing problems. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, ms-windows, macos | is listed by: Genetic Analysis Software | nlx_154064 | SCR_009070 | 2026-09-12 01:02:39 | 12 | |||||||||
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BAMA Resource Report Resource Website 50+ mentions |
BAMA (RRID:SCR_009071) | BAMA | software application, software resource | Software application to select a trait-associated subset of markers among many candidates. The program is based on Bayesian modeling/estimation and it suits for both quantitative and qualitative traits. It can handle bi- and multiallelic markers as well as applied in situations where part of the marker genotypes may be missing. As an output of the program, one obtains posterior estimate of number and positions of trait-associated markers. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, c, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154065 | SCR_009071 | Bayesian Analysis of Multilocus Association | 2026-09-12 01:02:39 | 98 |
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