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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
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PENTA-ID Resource Report Resource Website 10+ mentions |
PENTA-ID (RRID:SCR_004092) | PENTA-ID | clinical trial, data or information resource, disease-related portal, portal, topical portal, training resource | A Level 1 network for pediatric infectious disease in Europe recognized by the European networks of paediatric research at the European Medicines Agency (EnprEMA) whose activities vary from clinical trials, to cohort studies and training. It is currently developing a portfolio of clinical trials in antimicrobials in children, including antibiotics, antivirals and antifungals. | clinical trial, cohort study, pediatric, young human, child, antimicrobial, antibiotic, antiviral, antifungal | is related to: EMIF | HIV, Infectious disease, AIDS, Tuberculosis, Drug resistance | European Union | nlx_158553 | SCR_004092 | SciCrunch Registry | PENTA Foundation, Fondazione PENTA, Fondazione PENTA - for the Treatment and Care of Children with HIV-ONLUS | 2026-10-24 12:45:07 | 25 | ||||||
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Korea University; Seoul; South Korea Resource Report Resource Website 1+ mentions |
Korea University; Seoul; South Korea (RRID:SCR_004095) | university | Korea University is a private research university in Seoul, South Korea. Established in 1905, Korea University is one of the nation oldest and most prominent institutions of higher education. The student body consists of over 20,000 undergraduate students and over 10,000 graduate students. Korea University consists of the Seoul Campus, Sejong Campus and three auxiliary hospitals (Anam Hospital, Guro Hospital, Ansan Hospital). | Institution, private, research, university, Seoul, South Korea |
is parent organization of: Infectious Disease Biomarker Database is parent organization of: ISED- Influenza Sequence and Epitope Database is parent organization of: Iterative dual-regression with sparse prior is parent organization of: OpenBMI |
nlx_91872 | SCR_004095 | SciCrunch Registry | 2026-10-24 12:45:07 | 1 | ||||||||||
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ZENODO Resource Report Resource Website 5000+ mentions |
ZENODO (RRID:SCR_004129) | ZENODO | catalog, data or information resource, data repository, database, service resource, software repository, software resource, storage service resource | Repository for all research outputs from across all fields of science in any file format as well as both positive and negative results. They assign all publicly available uploads a Digital Object Identifier (DOI) to make the upload easily and uniquely citeable. They further support harvesting of all content via the OAI-PMH protocol. They promote peer-reviewed openly accessible research, and curate uploads. ZENODO allows users to create their own collection and accept or reject all uploads to it. They allow for uploading under a multitude of different licenses and access levels. | data set, software resource, video resource, audio track, image, poster, presentation, publication, digital preservation, digital archive, persistent identifier, digital object identifier, openaire orphan record repository |
is used by: NIH Heal Project is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: DataCite is listed by: FAIRsharing is related to: OpenAIRE |
European Union FP7 OpenAIREplus 283595 | DOI:10.5281, nlx_158614, DOI:10.17616/R3QP53, DOI:10.25504/FAIRsharing.wy4egf, r3d100011858 | https://doi.org/10.17616/R3QP53, https://doi.org/10.17616/r3QP53, https://doi.org/10.5281/, https://dx.doi.org/10.5281/, https://fairsharing.org/10.25504/FAIRsharing.wy4egf, https://doi.org/10.17616/R35W56 | SCR_004129 | SciCrunch Registry | Zenodo | 2026-10-24 12:45:08 | 6074 | ||||||
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Cambridge Neuroscience Department Resource Report Resource Website 1+ mentions |
Cambridge Neuroscience Department (RRID:SCR_008649) | data or information resource, department portal, organization portal, portal | This portal provides information about the neuroscience department at the University of Cambridge. Cambridge has a strong tradition in neuroscience having been host to the first analyses of neural signaling in the 1930s, determined the mechanisms of neuronal firing in the 1950s, and heralded some of the early theoretical approaches to the functions of neural circuitry in the 1960s. Neuroscience continues to grow at Cambridge, with an impressive record of achievement in multidisciplinary research. | education, analysis, circuitry, department, graduate, mechanism, neural, neuron, neuronal, neuroscience, research, signaling, theoretical, undergraduate | has parent organization: University of Cambridge; Cambridge; United Kingdom | nif-0000-33002 | SCR_008649 | SciCrunch Registry | Cambridge Neuroscience | 2026-10-24 12:46:11 | 1 | |||||||||
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The NeuroScience Network Resource Report Resource Website 100+ mentions |
The NeuroScience Network (RRID:SCR_008648) | data or information resource, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. An initiative to build connections among the many powerful resources across the region. Between colleges and universities, pharmaceutical and biotechnology companies, device developers, startups and service businesses, the Cure Corridor, Einsteins''s Alley, the Pharm Belt, or whatever you like to call the region, offers opportunities for discovery and development of new therapies that is unmatched. Sponsors: The NeuroScience Network is made possible, in part, through funding from Bio 1 WIRED. | biotechnology, college, connection, network, neuroscience, pharmaceutical, university | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-32997 | SCR_008648 | SciCrunch Registry | NeuroScience Network | 2026-10-24 12:46:08 | 107 | |||||||||
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Transgenic Hydra Facility Resource Report Resource Website 1+ mentions |
Transgenic Hydra Facility (RRID:SCR_008641) | biomaterial supply resource, material resource, organism supplier | The Transgenic Hydra Facility is a non-profit facility in the laboratory of Thomas Bosch at the University of Kiel that assists scientists to use and to develop transgenic Hydra polyps. Our mission is to provide investigators access to the latest technology for the efficient production of transgenic polyps. We particularly encourage scientists from laboratories lacking the infrastructure for transgenic Hydra technologies to use our services. Abstract: Understanding the evolution of development in large part relies on the study of phylogenetically old organisms. Cnidarians, such as Hydra, have become attractive model organisms for these studies. However, despite long-term efforts, stably transgenic animals could not be generated, severely limiting the functional analysis of genes. Here we report the efficient generation of transgenic Hydra lines by embryo microinjection. One of these transgenic lines expressing EGFP revealed remarkably high motility of individual endodermal epithelial cells during morphogenesis. We expect that transgenic Hydra will become important tools to dissect the molecular mechanisms of development at the base of the Metazoan tree. Sponsors: Financial support for this research was provided by the German Research Foundation [Deutsche Forschungsgemeinschaft Grants B0848/13 and SFB617. | has parent organization: University of Kiel; Schleswig-Holstein; Germany | nif-0000-32040 | SCR_008641 | SciCrunch Registry | Transgenic Hydra | 2026-10-24 12:46:11 | 1 | ||||||||||
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Yahoo Developer Network Resource Report Resource Website 50+ mentions |
Yahoo Developer Network (RRID:SCR_008594) | software resource | The YUI Library is a set of utilities and controls, written with JavaScript and CSS, for building richly interactive web applications using techniques such as DOM scripting, DHTML and AJAX. YUI is available under a BSD license and is free for all uses. YUI is proven, scalable, fast, and robust. Built by frontend engineers at Yahoo! and contributors from around the world, it''s an industrial-strength JavaScript library for professionals who love JavaScript. | nif-0000-31921 | SCR_008594 | SciCrunch Registry | Yahoo | 2026-10-24 12:46:08 | 55 | |||||||||||
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Aquatic Habitats Resource Report Resource Website 1+ mentions |
Aquatic Habitats (RRID:SCR_008597) | biomaterial manufacture, material service resource, production service resource, service resource |
Aquatic Habitats (AHAB) is the worlds largest manufacturer of housing systems for aquatic research animals. We are biologists first and engineers second, so we understand the complexity of aquatic life and how to sustain it. Our turnkey systems are secure, efficient and as fail-safe as possible. |
nif-0000-31933 | http://www.marinebiotech.com/ | SCR_008597 | SciCrunch Registry | AHAB | 2026-10-24 12:46:08 | 8 | ||||||||||
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WinLTP Resource Report Resource Website 100+ mentions |
WinLTP (RRID:SCR_008590) | software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on Jan 16th 2025. WinLTP is a stimulation, data acquisition and on-line analysis electrophysiological software for studying Long-Term Potentiation (LTP), Long-term Depression (LTD), and related phenomena. WinLTP is multitasking and simultaneously runs 1) LTP stimulus/acquisition/analyzing sweeps with protocol scripting, and 2) continuous acquisition saving Axon Binary Files (abf). WinLTP runs on Windows PCI bus computers and uses National Instruments PCI M-Series boards and Axon Instruments'' Digidata 1320A and 1322A data acquisition boards. Other software that can use the M-Series boards includes Axograph Scientific''s AxoGraph X, WaveMetrics'' IGOR, National Instruments'' LabView, John Dempster''s Strathclyde Electrophysiology Suite (WinWCP and WinEDR), Silver lab''s Nclamp, and QUB data acquisition., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | has parent organization: University of Bristol; Bristol; United Kingdom | DOI:10.1016/j.jneumeth.2006.12.018 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-31907 | SCR_008590 | SciCrunch Registry | WinLTP | 2026-10-24 12:46:07 | 220 | ||||||||
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Motif Extractor Resource Report Resource Website 100+ mentions |
Motif Extractor (RRID:SCR_008628) | software resource | motif-x (short for motif extractor) is a software tool designed to extract overrepresented patterns from any sequence data set. The algorithm is an iterative strategy which builds successive motifs through comparison to a dynamic statistical background. | has parent organization: Harvard University; Cambridge; United States | nif-0000-32002 | SCR_008628 | SciCrunch Registry | Motif-X | 2026-10-24 12:46:08 | 159 | ||||||||||
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DelPhi Resource Report Resource Website 1000+ mentions |
DelPhi (RRID:SCR_008669) | simulation software, software application, software resource | DelPhi provides numerical solutions to the Poisson-Boltzmann equation (both linear and nonlinear form) for molecules of arbitrary shape and charge distribution. The current version is fast, accurate, and can handle extremely high lattice dimensions. It also includes flexible features for assigning different dielectric constants to different regions of space and treating systems containing mixed salt solutions. DelPhi takes as input a coordinate file format of a molecule or equivalent data for geometrical objects and/or charge distributions and calculates the electrostatic potential in and around the system, using a finite difference solution to the Poisson-Boltzmann equation. DelPhi is a versatile electrostatics simulation program that can be used to investigate electrostatic fields in a variety of molecular systems. Features of DelPhi include solutions to mixtures of salts of different valence; solutions to different dielectric constants to different regions of space; and estimation of the best relaxation parameter at run time. | Poisson-Boltzmann equation, electrostatics, simulation software, mixed salt soluton |
has parent organization: Columbia University; New York; USA has parent organization: Howard Hughes Medical Institute |
NSF DBI-9904841 | nif-0000-33392 | SCR_008669 | SciCrunch Registry | 2026-10-24 12:46:08 | 1448 | |||||||||
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DE-ID Data Corp Resource Report Resource Website 1+ mentions |
DE-ID Data Corp (RRID:SCR_008668) | software resource | A commercial organization that suppplies software which creates separate HIPAA-compliant repositories of de-identified patient records and reports. This software allows clinicians, researchers, and administrative leadership to safely access, search, share, and analyze de-identified patient-level data. DE-ID can be acquired as stand-alone tool or integrated with data networks or clinical information systems. | clinical, data, patient protection, surgical report | nif-0000-33387 | SCR_008668 | SciCrunch Registry | DE-ID Data Corp | 2026-10-24 12:46:08 | 1 | ||||||||||
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JIV: A 3D Image Data Visualization and Comparison Tool Resource Report Resource Website |
JIV: A 3D Image Data Visualization and Comparison Tool (RRID:SCR_008657) | 3d visualization software, data processing software, data visualization software, software application, software resource | JIV is a Java software for visualization and side-by-side comparison of multiple 3D image datasets. While it was originally designed for remote data access, it can be used as a traditional local application as well. It features include being highly portable and platform-independent, the ability to run with a common Web browser and to cope with slow network links, an independent 3D image data format, and a display of gray-level (intensity) image data with a user-controlled color-mapping, among other features. | data visualization, java, mapping, platform, software, 3D visualization | has parent organization: McGill University; Montreal; Canada | nif-0000-33046 | SCR_008657 | SciCrunch Registry | JIV | 2026-10-24 12:46:08 | 0 | |||||||||
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SUN Interface Engine Resource Report Resource Website |
SUN Interface Engine (RRID:SCR_008659) | SUN Interface Engine | software resource | Oracle''s complete, open, and integrated product strategy provides flexibility and choice to our customers across their IT infrastructure. Now, with Sun server, storage, operating-system, and virtualization technology, Oracle is the only vendor able to offer a complete technology stack in which every layer is integrated to work together as a single system. Oracle''s open architecture and multiple operating-system options gives our customers unmatched benefits, including excellent system availability, scalability, energy efficiency, powerful performance, and low total cost of ownership Starting more than 30 years ago with Oracle''s innovative relational database, the Oracle stack today includes Oracle Enterprise Linux, Oracle VM, Oracle Fusion Middleware, and the largest and most complete set of industry and business applications software on the market. The addition of Sun storage and systems technology makes the Oracle stack complete. Oracle integrates every layer of the IT stack to deliver compelling value, based on high system availability and security, stunning performance, and low TCO. Only Oracle can offer this stack advantage to its customers through deep and seamless integration between the tiers that our competitors cannot match. | is listed by: Biositemaps | nif-0000-33145 | SCR_008659 | SciCrunch Registry | 2026-10-24 12:46:08 | 0 | ||||||||||
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Biological Concept Diagram Editor Resource Report Resource Website |
Biological Concept Diagram Editor (RRID:SCR_008654) | BCDE | data processing software, data visualization software, software application, software resource | Biological Concept Diagram Editor (BCDE) is a conceptual relationship diagramming tool specifically designed for biomedical researchers. It allows for efficient knowledge and data capture, fast diagram creation, easy data retrieval, and flexible exporting. The BCDE application is the main diagramming tool in the system. Through it, users can create, modify, load, and save BCDE diagrams. The diagrams created with BCDE application are network oriented. Each BCDE figure can be annotated using fields from the BioPAX level II format. In addition, a user can add URL links and attachments to a BCDE figure. Diagrams generated in BCDE are stored in the BCDE XML format for better database integration and better data extraction. | biological, biomedical, concept, data visualization, diagram, drawing, research, software, tool |
is related to: National Center for Integrative Biomedical Informatics has parent organization: University of Michigan; Ann Arbor; USA |
nif-0000-33033 | SCR_008654 | SciCrunch Registry | 2026-10-24 12:46:11 | 0 | |||||||||
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Scientific Review Committee Resource Report Resource Website 1+ mentions |
Scientific Review Committee (RRID:SCR_008652) | SRC | community building portal, data or information resource, portal | Many science fairs have a group of people called a Scientific Review Committee (or SRC) that reviews each project application to ensure that all safety and legal requirements will be met and that the appropriate forms have been completed. The committee also reviews the completed project displays. Typically, a Scientific Review Committee is composed of at least three people: a biomedical scientist, a physical scientist, and a science teacher. Some fairs also have an Institutional Review Board (IRB), which reviews all proposed projects that in any way involve human beings. An IRB''s purpose is to ensure that the project will not present undue risk to the subjects. | nif-0000-33367 | SCR_008652 | SciCrunch Registry | 2026-10-24 12:46:08 | 2 | |||||||||||
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GeneTraffic Resource Report Resource Website 10+ mentions |
GeneTraffic (RRID:SCR_008651) | data analysis software, data management software, data processing software, software application, software resource | GeneTraffic is a web-based microarray data analysis and management software developed by Iobion Informatics that allows users to log onto a server, upload their microarray data and perform analysis and project management remotely. GeneTraffic was made by Iobion Informatics (now under Stratagene) and can be accessed thorough Internet Explorer 6.0 or greater on Windows XP. | gene, data, management, microarray, software | nif-0000-33028 | SCR_008651 | SciCrunch Registry | 2026-10-24 12:46:08 | 24 | |||||||||||
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USC Geriatric Studies Center/Alzheimer's Disease Research Center Resource Report Resource Website |
USC Geriatric Studies Center/Alzheimer's Disease Research Center (RRID:SCR_008725) | USC Geriatric Studies Center | data or information resource, disease-related portal, portal, topical portal | The USC Geriatric Studies Center includes the State of California Alzheimer's Research Center of California and the National Institute of Aging funded clinical program of the USC Alzheimer's Disease Research Center. It is staffed by USC faculty and physicians with expertise in Alzheimer's disease and age related memory loss. The Center provides evaluation, diagnosis and treatment recommendations, referral to caregiver services and support groups, and the opportunity to participate in clinical drug trials for memory problems. | alzheimer's disease, age related memory loss, memory loss, memory impairment | has parent organization: University of Southern California Keck School of Medicine; California; USA | Aging | Available to the research community, Public | nlx_143675 | SCR_008725 | SciCrunch Registry | 2026-10-24 12:46:09 | 0 | |||||||
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Disease Phenotype Ontology Resource Report Resource Website 10+ mentions |
Disease Phenotype Ontology (RRID:SCR_008687) | controlled vocabulary, data or information resource, ontology | The Disease Ontology group has developed a set of standard representations of phenotypes associated with diseases useful in bioinformatics applications. These are formalized into an ontological structure and are encoded in OWL. Neurodegenerative diseases have a wide and complex range of biological and clinical symptoms. While neurodegenerative diseases share many pathological features in common, they also contain unique signatures. Animal models of these disorders are key to translational research. However, animal models typically replicate only a subset of disease features or display features that are only indirectly related to a given disorder, whose relationship to the human condition may be across several diseases. Matching animal models to human diseases is therefore a significant informatics challenge. We have been working to develop ontologies that capture essential features of neurodegenerative diseases and associated animal models in a way that allows more flexible matching of animal models to human disorders and in a way that makes explicit commonalities and differences among animal models and human neurodegenerative disease. Creating ontologies for diseases and disorders is a very challenging task (Gupta et al., 2003) because of the complexity of the disorders and because of the limitations of current ontology formalisms. In order to simplify the approach and make it practical for use in information systems, we have focused on formal descriptions of phenotypes associated with diseases and animal models rather than on a formal model of the disease process itself. We employ the modular ontologies developed as part of the Neuroscience Information Framework (NIF: http://nif.nih.gov) and the Phenotype and Trait Ontology (PATO), an ontology of qualities associated with biological phenotypes, to create a flexible template for creating phenotypic statements at the class and instance levels. We show how these phenotypes can be used to look for commonalities across multiple neurodegenerative conditions and animal models. | has parent organization: University of California at San Diego; California; USA | nif-0000-35922 | SCR_008687 | SciCrunch Registry | DPO | 2026-10-24 12:46:09 | 42 | ||||||||||
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OligoPicker Resource Report Resource Website 1+ mentions |
OligoPicker (RRID:SCR_008720) | OligoPicker | software resource | Software to help selecting up to five oligo probes for each of the DNA sequences you provided for microarray spotting. | is listed by: OMICtools | PMID:12724288 | GNU General Public License, Acknowledgement requested | OMICS_00830 | SCR_008720 | SciCrunch Registry | 2026-10-24 12:46:09 | 3 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
