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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Brown University; Rhode Island; USA Resource Report Resource Website |
Brown University; Rhode Island; USA (RRID:SCR_000957) | university | A private, Ivy League research university in Rhode Island, USA. The university offers degrees at the undergraduate and graduate level in a wide variety of fields. | private, university, research, undergraduate, graduate |
uses: ReadCube is related to: Mnemiopsis Genome Project Portal is parent organization of: HapCompass is parent organization of: ASC is parent organization of: Laboratory for Neural Computation and Cognition is parent organization of: Basal Ganglia Model in Action is parent organization of: Mutation Annotation and Genomic Interpretation is parent organization of: Brown University Rhode Island Biobank Core Facility is parent organization of: GASVPro is parent organization of: Spliceman is parent organization of: Brown University Alpert Medical School Department of Molecular Pharmacology Physiology and Biotechnology is parent organization of: Brown University Department of Neuroscience is parent organization of: Brown Alpert Medical School; Rhode Island; USA is parent organization of: Rnnotator is parent organization of: Brown University Genomics Core Facility is parent organization of: Brown Proteomics Shared Resource Facility is parent organization of: Brown University Labs and Facilities is parent organization of: THetA is parent organization of: North East Cyberinfrastructure Consortium is parent organization of: GASV is parent organization of: Human Neocortical Neurosolver is parent organization of: Brown Alpert Medical School Women and Infants Hospital of Rhode Island Kilguss Research Institute Molecular Biology and Imaging Core Facility is parent organization of: RepEnrich is parent organization of: Brown University Clinical Laboratory Core Facility is parent organization of: Brown University Health Center of Biomedical Research Excellence on Opioids and Overdose Admin Core Facility is parent organization of: Brown University BUH-OPIOID-COBRE Community Engagement Core Facility is parent organization of: Brown University BUH-COBRE Translational and Transformative Core Facility is parent organization of: Brown University BUH-OPIOID COBRE Data and Research Methods Core Facility |
ISNI:0000 0004 1936 9094, Crossref funder ID:100006418, grid.40263.33, Wikidata:Q49114, nlx_78147 | https://ror.org/05gq02987 | SCR_000957 | Brown | 2026-09-05 06:24:27 | 0 | ||||||||
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Austrian Agency for Health and Food Safety Resource Report Resource Website |
Austrian Agency for Health and Food Safety (RRID:SCR_000955) | AGES | nonprofit organization | A company based in Austria that supports the management of federal agencies relating to public health, animal health, food safety, medical and drug safety, food security and consumer protection. They provide professional and scientific expertise. | public health, animal health, food safety, medical and drug safety, food security, consumer protection, research, austria, | grid.414107.7, ISNI: 0000 0001 2224 6253, nlx_157916 | https://ror.org/055xb4311 | http://www.ages.at/ages/en/ | SCR_000955 | Austrian Agency for Health and Food Safety (AGES) | 2026-09-05 06:24:27 | 0 | |||||||
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University of Utah; Utah; USA Resource Report Resource Website |
University of Utah; Utah; USA (RRID:SCR_001003) | university | Public university in Utah, USA that provides undergraduate, master's, post graduate, graduate, and professional degree programs. | public, university, graduate, post graduate, undergraduate, master's |
is related to: International AMD Genetics Consortium is related to: Clinical and Translational Science Awards Consortium is parent organization of: University of Utah School of Medicine; Utah; USA is parent organization of: ShapeWorks is parent organization of: Pathline is parent organization of: Yandell Lab Portal is parent organization of: University of Utah Labs and Facilities is parent organization of: SLOPE is parent organization of: University of Utah Genetic Science Learning Center - Learn Genetics is parent organization of: Center for Integrative Biomedical Computing is parent organization of: SCIRun is parent organization of: Seg3D is parent organization of: TumorSim is parent organization of: SSU rRNA Modification Database is parent organization of: MMAPPR is parent organization of: MAKER is parent organization of: MAKER Web Annotation Service is parent organization of: Viking Viewer for Connectomics is parent organization of: VisTrails is parent organization of: Mouse Party is parent organization of: Atlases of the Brain is parent organization of: Schmidtea mediterranea Genome Database is parent organization of: Medical Biochemistry Resource is parent organization of: Georgie Project is parent organization of: BioMesh3D is parent organization of: ImageVis3D is parent organization of: map3d is parent organization of: MizBee is parent organization of: GNomEx is parent organization of: University of Utah Microarray and Genomic Analysis Core Facility is parent organization of: University of Utah Flow Cytometry Core Facility is parent organization of: BioPSE is parent organization of: RNA Modification Database is parent organization of: Nornir is parent organization of: ABC (Atlas Based Classification) is parent organization of: DTIProcess ToolKit is parent organization of: SCORE is parent organization of: Neoseg is parent organization of: FluoRender is parent organization of: Ir-tweak is parent organization of: GEMINI is parent organization of: Center for Iron and Heme Disorders at the University of Utah Iron and Heme Core is parent organization of: peddy is parent organization of: ITK-SNAP is parent organization of: University of Utah Cell Imaging Core Facility |
nlx_26775, Wikidata:Q168515, grid.223827.e, ISNI:0000 0001 2193 0096, Crossref funder ID:100007747 | https://ror.org/03r0ha626 | SCR_001003 | University of Utah | 2026-09-05 06:24:28 | 0 | ||||||||
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ROSTLAB Resource Report Resource Website 1+ mentions |
ROSTLAB (RRID:SCR_000792) | group | A lab organization which has bases in Munich, Germany and at Columbia University and focuses its research on protein structure and function using sequence and evolutionary information. They utilize machine learning and statistical methods to analyze genetic material and its gene products. Research goals of the lab involve using protein and DNA sequences along with evolutionary information to predict aspects of the proteins relevant to the advance of biomedical research. | protein, structure, function, dna, rna, gene, machine learning, statistics, analysis, protein, biomedical |
has parent organization: Columbia University; New York; USA is parent organization of: PredictNLS is parent organization of: SNPdbe |
NLM LM007329; NLM GM50291 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-31417 | http://cubic.bioc.columbia.edu/services/disis | SCR_000792 | Rost Group | 2026-09-05 06:24:25 | 1 | ||||||
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Aarhus University; Aarhus; Denmark Resource Report Resource Website |
Aarhus University; Aarhus; Denmark (RRID:SCR_000948) | AU | university | A public university in Denmark that offers degrees at the undergraduate and graduate level in fields such as engineering, nanotechnology, medicine and modern languages. | university, undergraduate, graduate, public, nanotechnology, engineering, medicine, modern languages, archaeology |
is parent organization of: EMI is parent organization of: FaBox is parent organization of: FastGap is parent organization of: Aarhus University Fluorescence Activated Cell Sorting Core Facility is parent organization of: Aarhus University Bioimaging Core Facility |
nlx_156945 | SCR_000948 | Aarhus Universitet, Aarhus University, University of Aarhus | 2026-09-05 06:24:27 | 0 | ||||||||
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Functional Annotation of the Mammalian Genome Resource Report Resource Website 10+ mentions |
Functional Annotation of the Mammalian Genome (RRID:SCR_000788) | FANTOM | consortium, data or information resource, database, organization portal, portal | International collaborative research project and database of annotated mammalian genome. Used to improve estimates of total number of genes and their alternative transcript isoforms in both human and mouse. Consortium to assign functional annotations to full length cDNAs that were collected during Mouse Encyclopedia Project at RIKEN. | mammal, genome, isoform, human, gene, transcriptome, regulatory network, FASEB list |
is related to: CAGE Basic Viewer for Mus musculus is related to: RIKEN integrated database of mammals has parent organization: RIKEN Brain Science Institute |
NIMH MH062261 | PMID:20211142 PMID:33211864 |
nif-0000-30552 | http://fantom.gsc.riken.jp | SCR_000788 | Functional Annotation of the Mammalian Genome, FANTOM, Functional Annotation of the Mammalian Genome (FANTOM) | 2026-09-05 06:24:27 | 43 | |||||
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HapCompass Resource Report Resource Website 1+ mentions |
HapCompass (RRID:SCR_000942) | algorithm | Software that utilizes a fast cycle basis algorithm for the accurate haplotype assembly of sequence data. It is able to create pairwise SNP phasings. | algorithm, haplotype, sequence, genome, dna, rna, snp |
is listed by: OMICtools has parent organization: Brown University; Rhode Island; USA |
NSF 1048831; NSF 1321000 |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00197 | SCR_000942 | 2026-09-05 06:24:27 | 1 | ||||||||
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FAS Center For Systems Biology Resource Report Resource Website 1+ mentions |
FAS Center For Systems Biology (RRID:SCR_000789) | group | A group dedicated to combining a variety of experimental and theoretical approaches to find general principles that explain the structure, behavior and evolution of cells and organisms. The center hosts a variety of fellows and faculty from various backgrounds such as biology, physics, chemistry, mathematics, computer science and engineering. | cell, organism, evolution, biology, physics, chemistry, mathematics, computer science, engineering, hybridization | has parent organization: Harvard University; Cambridge; United States | National Science Foundation DEB 0415718; National Science Foundation DEB 0640512 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30555 | SCR_000789 | FAS Center | 2026-09-05 06:24:25 | 2 | |||||||
|
Macquarie University Labs and Facilities Resource Report Resource Website |
Macquarie University Labs and Facilities (RRID:SCR_000944) | data or information resource, portal, topical portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 23,2023. Set of facilities based out of Macquarie University in New South Wales. Some facilities provide services such as proteome analysis or resources of various academic departments like engineering, biological sciences, and geography. | proteome, analysis, research, university, biological science, engineering, geography |
is listed by: ScienceExchange is related to: MQ Australian Proteome Analysis Facility is related to: MQ Animal Behaviour Laboratory is related to: MQ Ramaciotti Centre for Gene Function Analysis is related to: MQ BioFocus Research Centre is related to: MQ ARC Centre of Excellence for Engineered Quantum Systems is related to: Macquarie University MQ Research Centre in Quantum Science and Technology is related to: MQ Research Centre for Astronomy Astrophysics and Astrophotnics has parent organization: Macquarie University; Sydney; Australia |
THIS RESOURCE IS NO LONGER IN SERVICE | SciEx_9680 | https://www.mq.edu.au/ | SCR_000944 | Macquarie University Labs Facilities | 2026-09-05 06:24:27 | 0 | |||||||
|
cbiNifti: Matlab/Octave Nifti library Resource Report Resource Website 1+ mentions |
cbiNifti: Matlab/Octave Nifti library (RRID:SCR_000860) | cbiNifti | software library, software resource, software toolkit | An I/O library for Matlab/Octave Matlab and Octave library for reading and writing Nifti-1 files. cbiNifti is intended to be a small, self-contained library that makes minimal assumptions about what Nifti files should look like and allow users easy access to the raw data. cbiNifti handles compressed file formats for reading and writing, using Unix pipes for compression and decompression. More information and code examples at: http://www.pc.rhul.ac.uk/staff/J.Larsson/software.html | computed tomography, magnetic resonance, pet, spect, matlab, octave | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_155680 | SCR_000860 | 2026-09-05 06:24:26 | 1 | ||||||||
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National Institute of Health Sciences; Tokyo; Japan Resource Report Resource Website |
National Institute of Health Sciences; Tokyo; Japan (RRID:SCR_000981) | NIHS | government granting agency | Japanese national institute that conducts testing, research, and studies toward the proper evaluation of the quality, safety, and efficacy of pharmaceutical products, foods, and numerous chemicals in the living environment. Its major responsibilities involve extensive testing and research to ensure the quality, efficacy, and safety of chemical substances (including pharmaceuticals and food) that are closely related to people's lives. | nihs, national institute, health science, japan, research, pharmaceutical products, environment, testing, Drugs-Medical Devices, chemicals | nlx_157927 | SCR_000981 | National Institute of Health Sciences - Japan, National Institute of Health Sciences (Japan), National Institute of Health Sciences | 2026-09-05 06:24:27 | 0 | |||||||||
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National Cheng Kung University; Tainan; Taiwan Resource Report Resource Website 1+ mentions |
National Cheng Kung University; Tainan; Taiwan (RRID:SCR_000980) | NCKU | university | National Cheng Kung University is a research-led comprehensive university in Tainan, Taiwan that has undergraduate, master's, and doctoral degree programs. This university has fields of: science, engineering, medicine, management, planning and design. | ncku, national cheng kung university, cheng kung, taiwan university |
is parent organization of: Apo and Holo structures DataBase is parent organization of: CoIN is parent organization of: Tumor Associated Gene database |
nlx_34096 | SCR_000980 | National Cheng Kung University, Guoli Chenggong Daxue, National Cheng Kung University (NCKU), NCKU | 2026-09-05 06:24:27 | 2 | ||||||||
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BrainNetworkConstructionAnalysisPlatform Resource Report Resource Website |
BrainNetworkConstructionAnalysisPlatform (RRID:SCR_000854) | BrainNetworkConstructionAnalysisPlatform | data processing software, data visualization software, software application, software resource | Construct and analyse brain network is a brain network visualization tool, which can help researchers to visualize construct and analyse resting state functional brain networks from different levels in a quick, easy and flexible way. Entrance parameter of construct and analyse brain network is export parameters of dparsf software.It would be greatly appreciated if you have any suggestions about the package or manual. | magnetic resonance | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_155590 | SCR_000854 | 2026-09-05 06:24:26 | 0 | ||||||||
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Liverpool John Moores University; Liverpool; United Kingdom Resource Report Resource Website |
Liverpool John Moores University; Liverpool; United Kingdom (RRID:SCR_000975) | LJMU | university | Liverpool John Moores University provides undergraduate, masters, and doctorate programs. | ljmu, liverpool university, liverpool, university, uk, undergraduate, graduate, doctorate, masters | nlx_158057 | SCR_000975 | Liverpool John Moores University, Liverpool John Moores University (LJMU) | 2026-09-05 06:24:27 | 0 | |||||||||
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Johns Hopkins University School of Medicine; Baltimore, Maryland; USA Resource Report Resource Website |
Johns Hopkins University School of Medicine; Baltimore, Maryland; USA (RRID:SCR_000973) | JHM | university | Johns Hopkins University School of Medicine is a medical graduate institution that provides physician, clinical fellowship and residency programs. | institution, university, baltimore, maryland, usa, medicine, medical school, med school, physician, clinical fellowship, fellowship, residency |
uses: Scizzle has parent organization: Johns Hopkins University; Maryland; USA is parent organization of: SAGE GENIE is parent organization of: Johns Hopkins NIMH Research Center Novel Therapeutics of HIV-associated Cognitive Disorders is parent organization of: Johns Hopkins University Pharmacology is parent organization of: DermAtlas. is parent organization of: DTI White Matter Atlas is parent organization of: Johns Hopkins Laboratory of Brain Anatomical MRI is parent organization of: OMIM is parent organization of: Johns Hopkins University Neuroscience is parent organization of: Johns Hopkins Alzheimer's Disease Research Center is parent organization of: Precursors of Premature Disease and Death is parent organization of: kmer-SVM is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Health and Populations Science Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Gene Editing Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Cell Biology Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center Administrative Core is parent organization of: Johns Hopkins University - University of Maryland Diabetes Research Center is parent organization of: PhenoDB is parent organization of: Johns Hopkins Medical Institute Clinical and Translational Research Laboratory Core Facility is parent organization of: Johns Hopkins University School of Medicine Mass Spectrometry and Proteomics Core Facility is parent organization of: Johns Hopkins Reference Histology Core Facility is parent organization of: Johns Hopkins University School of Medicine Center for Proteomics Discovery CPD Core Facility |
, Wikidata: Q50363516, GRID: grid.469474.c, ISNI: 0000 0000 8617 4175, nlx_76328 | https://ror.org/037zgn354 | SCR_000973 | , Johns Hopkins Medicine, Johns Hopkins University School of Medicine (JHM), Johns Hopkins University School of Medicine | 2026-09-05 06:24:27 | 0 | |||||||
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Max Planck Institute for Marine Microbiology; Bremen; Germany Resource Report Resource Website |
Max Planck Institute for Marine Microbiology; Bremen; Germany (RRID:SCR_000978) | MPI | institution | The Max Planck Institute for Marine Microbiology is an international university that offers the PhD programme International Max-Planck Research School (IMPRS) of Marine Microbiology (Marmic) together with the Alfred Wegener Institute for Polar and Marine Research, the University of Bremen and Jacobs University Bremen. Currently, the institute consists of four departments with several associated research groups: Microbiology, Biogeochemistry, Molecular Ecology, and Symbiosis. | institute, microbiology, marine, marine microbiology, bremen, germany, mpi for marine microbiology, phD program, marmic, imprs, microbiology, biogeochemistry, molecular ecology, ecology, symbiosis |
has parent organization: Max-Planck-Gesellschaft is parent organization of: MeGX is parent organization of: TETRA is parent organization of: TaxSOM is parent organization of: SINA |
ISNI: 0000 0004 0491 3210, nlx_81711, Wikidata: Q876880, grid.419529.2 | https://ror.org/02385fa51 | SCR_000978 | max planck institut fur marine mikrobiologie, Max Planck Institute for Marine Microbiology | 2026-09-05 06:24:27 | 0 | |||||||
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Montana State University Resource Report Resource Website 1+ mentions |
Montana State University (RRID:SCR_000979) | MSU | university | Montana State University is a university institute has programs for undergraduate, master's and doctoral degrees. There are 54 master's degree options, 37 doctoral degree options including one specialist program, and 14 certificate options. | msu, undergraduate, graduate, master's, doctoral, phD, montana, institution, university |
is parent organization of: MSU Subzero Science and Engineering Research Core Facility is parent organization of: MSU Magnetic Resonance Core Laboratory is parent organization of: Montana State University, Department of Cell Biology and Neuroscience is parent organization of: Yogo Data Management System is parent organization of: NeuroSys Data Management System is parent organization of: MSU Paleohistology Core Laboratory is parent organization of: MSU Animal Resource Center is parent organization of: Montana State University Bioinformatics Core Facility is parent organization of: MSU FACS Core Laboratory is parent organization of: Montana State University Functional Genomics Core Facility is parent organization of: MSU Imaging and Chemical Analysis Core Laboratory is parent organization of: MSU Large animal BSL-2 is parent organization of: MSU Metabolomics Core Facility is parent organization of: MSU Microscopy Core Facility is parent organization of: MSU Proteomics Core Laboratory is parent organization of: MSU Research Computing Group is parent organization of: MSU Transmission Electron Microscopy Core Laboratory is parent organization of: MSU X-ray Crystallography Core Laboratory is parent organization of: Montana State University Labs and Facilities is parent organization of: Montana State University Mass Spectrometry Core Facility is parent organization of: Montana State University Research Cyberinfrastructure Core Facility is parent organization of: Montana State University Cellular Analysis Core Facility is parent organization of: Montana State University Social Data Collection and Analysis Services Core Facility is parent organization of: Montana State University Imaging and Chemical Analysis Laboratory Core Facility is parent organization of: Montana State University Cryo-EM Core Facility is parent organization of: Montana State University Nuclear Magnetic Resonance Core Facility is parent organization of: Montana State University Montana Microfabrication Core Facility is parent organization of: Montana State University Geospatial Core Facility is parent organization of: Montana State University Animal Resources Center Core Facility is parent organization of: Montana State University CBE Bioimaging and Analytical Core Facility is parent organization of: Montana State University Biophotonics Core Facility |
nlx_53872, ISNI:0000 0001 2156 6108, grid.41891.35, Crossref funder ID:100009501, Wikidata:Q1861687 | https://ror.org/02w0trx84 | SCR_000979 | Montana State University, Montana State University (MSU), Montana State | 2026-09-05 06:24:27 | 2 | |||||||
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International Institute of Molecular and Cell Biology; Warsaw; Poland Resource Report Resource Website 1+ mentions |
International Institute of Molecular and Cell Biology; Warsaw; Poland (RRID:SCR_000971) | IIMCB | institution | International Institute of Molecular and Cell Biology creates partnerships with research centers within and outside Poland. This organization provides a base of administration, management of finances and resources, sharing space and equipment, grant writing and grant management procedures, etc. They organize workshops, training courses, conferences and other scientific events for researchers of various specialties and nationalities. Additionally, this organization commercializes results to provide biotechnological solutions with regards to the global economy and global research services deals. | poland, warsaw, institution, administration, management, equipment, grant writing, grant management, commercial, biotechnology, global economy, global research, research center, partnership |
is parent organization of: MetaLocGramN is parent organization of: Modomics |
nlx_156957, grid.419362.b | https://ror.org/01y3dkx74 | SCR_000971 | International Institute of Molecular and Cell Biology, International Institute of Molecular and Cell Biology (IIMCB) | 2026-09-05 06:24:27 | 1 | |||||||
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Indian Institute of Science; Bangalore; India Resource Report Resource Website |
Indian Institute of Science; Bangalore; India (RRID:SCR_000969) | IISc | institution | A public research university for science and higher education in India. The university has six main divisions, including the biological sciences, chemical sciences, electrical sciences, mechanical sciences, physical and mathematical sciences, and interdisciplinary research. | university, science institute, higher education |
is parent organization of: SUPFAM is parent organization of: CADB - Conformational Angles DataBase of Proteins is parent organization of: MulPSSM is parent organization of: PALI- Phylogeny and Alignment of homologous protein str |
nlx_73023 | SCR_000969 | Indian Institute of Science | 2026-09-05 06:24:27 | 0 | ||||||||
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European Food Safety Authority Resource Report Resource Website 10+ mentions |
European Food Safety Authority (RRID:SCR_000963) | EFSA | nonprofit organization | A government granting agency which consults with partnered programs through national authorities and food safety agencies. EFSA organizes its annual and multi-annual work program according to priorities agreed with the European Commission and other partners, taking into account available resources. EFSA staff may also produce scientific outputs on behalf of the agency, such as peer reviews of the assessment of active substances in pesticides, or responses to urgent requests for advice. EFSA staff also monitor and analyze information and data on biological hazards, chemical contaminants, food consumption and emerging risks. | european, food safety, grants, granting agency, eu, regional funding resource | Wikidata: Q516521, nlx_157920, ISNI: 0000 0004 1792 4701, grid.483440.f | https://ror.org/056nc1c48 | SCR_000963 | 2026-09-05 06:24:27 | 11 |
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