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http://purl.bioontology.org/ontology/TEO
Ontology for representing events, time, and their relationships.
Proper citation: Time Event Ontology (RRID:SCR_000310) Copy
http://purl.bioontology.org/ontology/VARIO
An ontology for standardized, systematic description of effects, consequences and mechanisms of variations.
Proper citation: Variation Ontology (RRID:SCR_000311) Copy
Open source and enterprise ready professional software for R statistical computing environment. Integrated development environment for R. Includes console, syntax highlighting editor that supports direct code execution, as well as tools for plotting, history, debugging and workspace management. Available in open source and commercial editions and runs on desktop Windows, Mac, and Linux or in browser connected to RStudio Server or RStudio Server Pro (Debian/Ubuntu, RedHat/CentOS, and SUSE Linux).
Proper citation: RStudio (RRID:SCR_000432) Copy
http://purl.bioontology.org/ontology/SEDI
An ontology for DICOM as used in the SeDI project.
Proper citation: Semantic DICOM Ontology (RRID:SCR_000309) Copy
http://www.bioconductor.org/packages/release/bioc/html/QUALIFIER.html
Software that provides quality control and quality assessment tools for gated flow cytometry data.
Proper citation: QUALIFIER (RRID:SCR_000389) Copy
http://www.nitrc.org/projects/scribe/
Scribe encodes papers to populate the BrainMap Database
Proper citation: Scribe (RRID:SCR_000423) Copy
A commercial graphing software company that offers scientific software for statistical analyses, curve fitting and data analysis. It offers four programs: Prism, InStat, StatMate and QuickCalcs.
Proper citation: GraphPad (RRID:SCR_000306) Copy
http://www.altmetric.com/bookmarklet.php
Free bookmarklet for Chrome, Firefox and Safari that allows you to instantly get article level metrics for any recent paper. Simply drag the button below to your bookmarks bar, navigate to a journal article page, and hit Altmetric it!
Proper citation: Altmetric Bookmarklet (RRID:SCR_000427) Copy
Private research university in Greater St. Louis with its main campus mostly in unincorporated St. Louis County, Missouri and Clayton, Missouri.
Proper citation: Washington University in St. Louis; Missouri; USA (RRID:SCR_000343) Copy
http://wzar.unizar.es/servicios/ingles/prese.htm
An undergraduate and postgraduate university which is located in Zaragoza, Spain.
Proper citation: University of Zaragoza; Zaragoza; Spain (RRID:SCR_000341) Copy
University located in Zürich, Switzerland was founded in 1833. Has faculties in Philosophy, Human Medicine, Economic Sciences, Law, Mathematics and Natural Sciences, Theology and Veterinary Medicine. Offers the widest range of subjects and courses of any Swiss higher education institution. As of October 2018, 23 Nobel laureates and 1 Turing Award winner have been affiliated with University of Zurich as alumni, faculty or researchers.
Proper citation: University of Zurich; Zurich; Switzerland (RRID:SCR_000342) Copy
Reference-free ddRADseq analysis software tools. The pipeline script generates reference-sorted, indexed BAM from uniqued reads from radtag sequencing lanes.
Proper citation: rtd (RRID:SCR_000337) Copy
An university in Utah which provides opportunities in teaching, research and clinical experience for developing physicians. This organization provides MD degrees, physician training, residency, fellowship specialty training and degrees in public health or research.
Proper citation: University of Utah School of Medicine; Utah; USA (RRID:SCR_000339) Copy
https://www.infoquant.com/oneclickcgh
Platform-independent array copy number analysis software that provides straightforward yet comprehensive detection and reporting of copy number changes.
Proper citation: oneClickCGH (RRID:SCR_000294) Copy
http://sourceforge.net/projects/fqzcomp/
A basic fastq compressor, designed primarily for high performance.
Proper citation: fqzcomp (RRID:SCR_000299) Copy
A military affiliated research institute which focuses on funding and approving new and ongoing programs while ensuring a balanced investment portfolio. This organization is mainly concerned with making investments in technologies that can be used for national security.
Proper citation: Defense Advanced Research Projects Agency (RRID:SCR_000330) Copy
A database of job listings
Proper citation: Indeed (RRID:SCR_000292) Copy
http://www.wavemetrics.com/products/igorpro/igorpro.htm
Software used for visualizing and graphing data, image processing, and programming. It is designed for use by scientists and engineers and supports large data sets, evenly spaced data, and various data import formats. The software includes a suite of image processing operations for image filtering, manipulation, and quantification and is completely programmable.
Proper citation: IGOR Pro (RRID:SCR_000325) Copy
A biotech company that commercializes its patented Red/ET recombination worldwide as licenses and supplies several products for the pharmaceutical and biotech industry as well as academia. It operates from the Technologie Park in Heidelberg and provides customized in-house DNA modification of any kind. Recombineering with Red/ET allows cloning, subcloning and modification of DNA at any chosen position. It permits precise engineering of DNA molecules of any size, including very large ones such as BACs or the E.coli chromosome.
Proper citation: Gene Bridges (RRID:SCR_000483) Copy
http://sourceforge.net/projects/mirprimer/
Software tool for automatic design of primers for PCR amplification of microRNAs using the method miR-specific RT-qPCR (Balcells, I., Cirera, S., and Busk, P.K. (2011). Specific and sensitive quantitative RT-PCR of miRNAs with DNA primers. BMC Biotechnol. 11, 70).
Proper citation: miRprimer (RRID:SCR_000480) Copy
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