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http://www.bioconductor.org/packages/release/bioc/html/iASeq.html

Software that uses a Bayesian hierarchical mixture model to learn correlation patterns of allele-specificity among multiple proteins.

Proper citation: iASeq (RRID:SCR_000420) Copy   

•   Source: SciCrunch Registry

http://www.massachusetts.edu/index.html

A five-campus public university system in Massachusetts. The system includes four universities, a medical school, and a satellite campus.

Proper citation: University of Massachusetts; Massachusetts; USA (RRID:SCR_000379) Copy   

•   Source: SciCrunch Registry

http://www.nitrc.org/projects/mri_lbptop/

The packaged tools perform Local Binary Pattern on Three Orthogonal Planes (LBP-TOP) analysis on MR brain images. One can use them to extract LBP texture features for machine learning applications or other advance analysis. Bash scripts performing simple preprocessing with FSL and AFNI as well as LBP mapping programs written by Java are both including in this package. The output is the histogram describing the brain morphology.

Proper citation: Local Binary Pattern Analysis Tools for MR Brain Images (RRID:SCR_000412) Copy   

•   Source: SciCrunch Registry

http://cran.r-project.org/web/packages/PSCBS/

Software R package for segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.

Proper citation: PSCBS (RRID:SCR_000417) Copy   

•   Source: SciCrunch Registry

http://www.opencolleges.edu.au/

A resource for online accredited courses in a wide variety of areas, including accounting, animal care, beauty, building and construction, business, education, design and writing. This resource is based in Australia.

Proper citation: Open Colleges (RRID:SCR_000418) Copy   

•   Source: SciCrunch Registry

http://micro-manager.org

Software package for control of automated microscopes. Cross-platform desktop application, to control motorized microscopes, scientific cameras, stages, illuminators, and other microscope accessories.

Proper citation: uManager (RRID:SCR_000415) Copy   

•   Source: SciCrunch Registry

http://udn.nichd.nih.gov/

Understanding the mechanisms underlying the expression and perception of auditory communication in nonhuman primates provides important insights for understanding the neural systems that mediate nonverbal auditory communication in humans. Our research is devoted to understanding the changes in vocal behavior that are associated with maturation and social experience under normative conditions, and to investigating neural systems to define their roles in auditory communication. The anterior cingulate gyrus, in the frontal cerebral cortex, is an essential neural system for the expression of the primate isolation call, a structural and functional equivalent of the cry sounds of humans. Bilateral removal of this structure in adult squirrel monkeys resulted in a long-lasting inability to emit isolation calls. Partial recovery, often over many weeks, initially took the form of production of short, faint and uninflected versions of the typical isolation call. Humans suffering infarct damage to this region likewise show an initial recovery in the form of short, faint, monosyllabic sounds, suggesting that the anterior cingulate gyrus of nonhuman primates is the evolutionary precursor of a neural structure involved in human affective expression and speech. Our working model of isolation call production is that the anterior cingulate gyrus is the site where the command to produce this vocalization is initiated. Since the anterior cingulate region also has reciprocal connections with temporal lobe auditory cortex, a presumptive feedback pathway exists for registering commands to initiate vocalization with the temporal lobe cortex, which plays a major role in perceiving and decoding the acoustic details of species-specific vocalizations. At present, we do not know the role of the anterior cingulate gyrus in the production of infant vocalizations. However, we have found that neonatal removal of the amygdala, an important forebrain component of the limbic system, or portions of the inferotemporal gyrus, which sends projections to the amygdala, result in significant changes in the vocal behavior of infant rhesus macaques. Vocal development is a dynamic process, and a pattern shared by several nonhuman primates has emerged regarding the nature of this process. Infants are highly vocal during periods of brief separation from their caregiver, and we take advantage of this to document the range of vocalizations produced by infants of different ages. In the neonatal period, infants of 3 species of nonhuman primate (rhesus macaque, squirrel monkey and common marmoset) all produce sounds that vary widely in their acoustic structure. Many of these bear a striking similarity to sounds used in a variety of social settings by adults, suggesting that neural systems responsible for generating adult vocalizations are already in place during early infancy. As infants mature, their vocal behavior during brief periods of social separation becomes much more stereotyped. It isn't until much later in development, as individuals engage in a variety of social interactions with peers and adults, that the sounds expressed in early infancy begin to re-appear in adult contexts. The role of individual experience during development is currently being explored to determine the mechanisms leading to the acquisition of adult vocal skills.

Proper citation: NICHD Developmental Neuroethology - Laboratory of Comparative Ethology (RRID:SCR_000416) Copy   

•   Source: SciCrunch Registry

http://www.tju.edu.cn/

A national university in China with degree programs that include engineering, economics, humanities, law and art at the undergraduate, graduate and doctoral level.

Proper citation: Tianjin University; Tianjin; China (RRID:SCR_000372) Copy   

•   Source: SciCrunch Registry

http://www.tuskegee.edu/

A private, historically black university that offers degree programs at the undergraduate, graduate, doctoral and professional levels. The university has programs that include veterinarian studies, allied health, nursing, education

Proper citation: Tuskegee University; Alabama; USA (RRID:SCR_000373) Copy   

•   Source: SciCrunch Registry

http://www.lse.ac.uk/

A public research university in London with an emphasis in social science degree programs such as law, mathematics, public affairs and international history. The university offers degrees at the undergraduate, graduate and doctoral level.

Proper citation: London School of Economics and Political Science; London; United Kingdom (RRID:SCR_000370) Copy   

•   Source: SciCrunch Registry

http://international.tau.ac.il/

A public university in Israel with degree programs in areas such as arts, engineering, humanities, the law and medicine at the undergraduate and graduate level. The university has affiliated but independent schools that focus on specific areas such as music, environmental studies, dentistry, social work, education and neuroscience.

Proper citation: Tel Aviv University; Ramat Aviv; Israel (RRID:SCR_000371) Copy   

•   Source: SciCrunch Registry

http://www.lonza.com/

A supplier of various biochemical products for research in pharmacy and biotechnology as well as the specialty ingredients market. Examples of products include active pharmaceutical ingredients, stem cell therapies, drinking water sanitizers and agriculture services and products.

Proper citation: Lonza (RRID:SCR_000377) Copy   

•   Source: SciCrunch Registry

http://www.usq.edu.au/

A public university in Australia that offers degree programs in business, law and education as well as health, engineering and the sciences at the undergraduate level. The university also does research at three research institutes and seven research centers which focus on a wide range of business, agricultural, scientific, environmental, and technological issues.

Proper citation: University of Southern Queensland; Queensland; Australia (RRID:SCR_000374) Copy   

•   Source: SciCrunch Registry

http://www.bioconductor.org/packages/release/bioc/html/rTANDEM.html

An R/Bioconductor package that interfaces the X!Tandem protein identification algorithm.

Proper citation: rTANDEM (RRID:SCR_000409) Copy   

•   Source: SciCrunch Registry

http://www.allegheny.edu/

A private liberal arts college that offers degrees in social sciences, humanities and natural sciences at the undergraduate level.

Proper citation: Allegheny College; Pennsylvania; USA (RRID:SCR_000369) Copy   

•   Source: SciCrunch Registry

https://sites.google.com/site/beckerjeremie/home/nucleofinder

A software for a statistical approach for the detection of nucleosome positions in a cell population. The software identifies important features of nucleosome organization such as the spacing downstream of active promoters and the enrichment and depletion of GC/AT dinucleotides of in vitro nucleosomes.

Proper citation: NucleoFinder (RRID:SCR_000368) Copy   

•   Source: SciCrunch Registry

https://github.com/yongchao/flowPeaks

Software for fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means.

Proper citation: flowPeaks (RRID:SCR_000407) Copy   

•   Source: SciCrunch Registry

https://github.com/NetherlandsMetabolomicsCentre/TNO-DECO

Matlab code for preprocessing gas chromatography mass spectrometry data.

Proper citation: TNO-DECO (RRID:SCR_000440) Copy   

•   Source: SciCrunch Registry

https://github.com/mickaelleclercq/mirdup

A software used for the validation of pre-miRNAs predictions as well as predict the final structure of mature miRNA.

Proper citation: MiRdup (RRID:SCR_000316) Copy   

•   Source: SciCrunch Registry

http://onlinelibrary.wiley.com/journal/10.1002/%28ISSN%291757-7012

Wiley Interdisciplinary Reviews series combines features of encyclopedic reference works and review journals in innovative online format. They are designed to promote cross-disciplinary research ethos while maintaining the highest scientific and presentational standards, but should be viewed first and foremost as evolving online databases of cutting-edge reviews.

Proper citation: WILEY Interdisciplinary Reviews (RRID:SCR_000392) Copy   

•   Source: SciCrunch Registry