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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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iASeq Resource Report Resource Website |
iASeq (RRID:SCR_000420) | software resource | Software that uses a Bayesian hierarchical mixture model to learn correlation patterns of allele-specificity among multiple proteins. | software package, unix/linux, mac os x, windows, r, chip-seq, rna-seq, snp |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:23194258 | Free, Available for download, Freely available | OMICS_05505 | SCR_000420 | iASeq: integrating multiple sequencing datasets for detecting allele-specific events | 2026-09-05 06:24:19 | 0 | |||||||
|
University of Massachusetts; Massachusetts; USA Resource Report Resource Website 1+ mentions |
University of Massachusetts; Massachusetts; USA (RRID:SCR_000379) | UMass | university | A five-campus public university system in Massachusetts. The system includes four universities, a medical school, and a satellite campus. | public, university, system, boston, massachusetts, medicine |
is related to: Beta Cell Biology Consortium is parent organization of: University of Massachusetts Amherst; Massachusetts; USA is parent organization of: University of Massachusetts Lowell; Massachusetts; USA is parent organization of: University of Massachusetts Medical School; Massachusetts; USA is parent organization of: University of Massachusetts Chan Medical School Metabolomics Core Facility is parent organization of: University of Massachusetts Flow Cytometry Core Facility is parent organization of: University of Massachusetts Chan Medical School BioImage Data Management and Sharing Core Facility |
GRID grid.266684.8, ISNI 0000 0001 2184 9220, nlx_18192, Wikidata Q1061122 | https://ror.org/0260j1g46 | SCR_000379 | University of Massachusetts System, UMass, University of Massachusetts | 2026-09-05 06:24:19 | 2 | |||||||
|
Local Binary Pattern Analysis Tools for MR Brain Images Resource Report Resource Website 1+ mentions |
Local Binary Pattern Analysis Tools for MR Brain Images (RRID:SCR_000412) | LBP Analysis Tools for MR Brain Images | data processing software, image analysis software, image processing software, software application, software resource | The packaged tools perform Local Binary Pattern on Three Orthogonal Planes (LBP-TOP) analysis on MR brain images. One can use them to extract LBP texture features for machine learning applications or other advance analysis. Bash scripts performing simple preprocessing with FSL and AFNI as well as LBP mapping programs written by Java are both including in this package. The output is the histogram describing the brain morphology. | free for non-commercial use only, mr | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | Free, Available for download, Freely available | nlx_155652 | SCR_000412 | 2026-09-05 06:24:19 | 1 | ||||||||
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PSCBS Resource Report Resource Website |
PSCBS (RRID:SCR_000417) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software R package for segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported. | abnormal copy number regions detection, allele specific DNA copy number data segmentation, |
is listed by: OMICtools is listed by: Debian is related to: CRAN has parent organization: University of California at San Francisco; California; USA |
PMID:21666266 DOI:10.1093/bioinformatics/btr329 |
Free, Available for download, Freely available | OMICS_05545 | https://sources.debian.org/src/r-cran-pscbs/ | SCR_000417 | PSCBS: Analysis of Parent-Specific DNA Copy Numbers | 2026-09-05 06:24:19 | 0 | ||||||
|
Open Colleges Resource Report Resource Website |
Open Colleges (RRID:SCR_000418) | Open Colleges | online course, training resource | A resource for online accredited courses in a wide variety of areas, including accounting, animal care, beauty, building and construction, business, education, design and writing. This resource is based in Australia. | open source, accredited, accounting, beauty, animal care, writing, journalism, education, business, building, real estate |
is parent organization of: Open Colleges Interactive Brain is parent organization of: Open Colleges Group |
nlx_155866 | SCR_000418 | 2026-09-05 06:24:19 | 0 | |||||||||
|
uManager Resource Report Resource Website 100+ mentions |
uManager (RRID:SCR_000415) | data acquisition software, data processing software, software application, software resource, software toolkit | Software package for control of automated microscopes. Cross-platform desktop application, to control motorized microscopes, scientific cameras, stages, illuminators, and other microscope accessories. | microscopy, plugin, data acquisition, automated microscope control, |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: ImageJ has parent organization: University of California at San Francisco; California; USA |
Free, Available for download, Freely available | SCR_016865, nlx_155812 | https://micro-manager.org/wiki/Download_Micro-Manager_Latest_Release, https://sources.debian.org/src/micromanager/, http://www.nitrc.org/projects/micromanager | SCR_000415 | Micro-Manager, Micro Manager | 2026-09-05 06:24:20 | 285 | |||||||
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NICHD Developmental Neuroethology - Laboratory of Comparative Ethology Resource Report Resource Website |
NICHD Developmental Neuroethology - Laboratory of Comparative Ethology (RRID:SCR_000416) | NICHD Laboratory of Comparative Ethology | data or information resource, laboratory portal, organization portal, portal | Understanding the mechanisms underlying the expression and perception of auditory communication in nonhuman primates provides important insights for understanding the neural systems that mediate nonverbal auditory communication in humans. Our research is devoted to understanding the changes in vocal behavior that are associated with maturation and social experience under normative conditions, and to investigating neural systems to define their roles in auditory communication. The anterior cingulate gyrus, in the frontal cerebral cortex, is an essential neural system for the expression of the primate isolation call, a structural and functional equivalent of the cry sounds of humans. Bilateral removal of this structure in adult squirrel monkeys resulted in a long-lasting inability to emit isolation calls. Partial recovery, often over many weeks, initially took the form of production of short, faint and uninflected versions of the typical isolation call. Humans suffering infarct damage to this region likewise show an initial recovery in the form of short, faint, monosyllabic sounds, suggesting that the anterior cingulate gyrus of nonhuman primates is the evolutionary precursor of a neural structure involved in human affective expression and speech. Our working model of isolation call production is that the anterior cingulate gyrus is the site where the command to produce this vocalization is initiated. Since the anterior cingulate region also has reciprocal connections with temporal lobe auditory cortex, a presumptive feedback pathway exists for registering commands to initiate vocalization with the temporal lobe cortex, which plays a major role in perceiving and decoding the acoustic details of species-specific vocalizations. At present, we do not know the role of the anterior cingulate gyrus in the production of infant vocalizations. However, we have found that neonatal removal of the amygdala, an important forebrain component of the limbic system, or portions of the inferotemporal gyrus, which sends projections to the amygdala, result in significant changes in the vocal behavior of infant rhesus macaques. Vocal development is a dynamic process, and a pattern shared by several nonhuman primates has emerged regarding the nature of this process. Infants are highly vocal during periods of brief separation from their caregiver, and we take advantage of this to document the range of vocalizations produced by infants of different ages. In the neonatal period, infants of 3 species of nonhuman primate (rhesus macaque, squirrel monkey and common marmoset) all produce sounds that vary widely in their acoustic structure. Many of these bear a striking similarity to sounds used in a variety of social settings by adults, suggesting that neural systems responsible for generating adult vocalizations are already in place during early infancy. As infants mature, their vocal behavior during brief periods of social separation becomes much more stereotyped. It isn't until much later in development, as individuals engage in a variety of social interactions with peers and adults, that the sounds expressed in early infancy begin to re-appear in adult contexts. The role of individual experience during development is currently being explored to determine the mechanisms leading to the acquisition of adult vocal skills. | behavior, ethology, development, auditory communication, nonverbal auditory communication, vocal behavior, maturation, social experience, neural system, vocal development, vocal skill, development, infant, amygdala, anterior cingulate gyrus, voice, sound, adult, neuroethology, primate behavior, functional neuroanatomy, atlas |
has parent organization: National Institute of Child Health and Human Development is parent organization of: Brain atlas of the common marmoset |
NICHD | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00398 | SCR_000416 | Developmental Neuroethology - Laboratory of Comparative Ethology | 2026-09-05 06:24:19 | 0 | ||||||
|
Tianjin University; Tianjin; China Resource Report Resource Website |
Tianjin University; Tianjin; China (RRID:SCR_000372) | TJU | university | A national university in China with degree programs that include engineering, economics, humanities, law and art at the undergraduate, graduate and doctoral level. | china, national university, engineering, economics, law, humanities, doctoral, undergraduate, graduate |
is parent organization of: DEG - Database of Essential Genes is parent organization of: Greglist is parent organization of: QTLbase |
grid.33763.32, Crossref funder ID:501100004517, Wikidata:Q2031560, nlx_28979, ISNI:0000 0004 1761 2484 | https://ror.org/012tb2g32 | http://www.tju.edu.cn/english/ | SCR_000372 | TJU | 2026-09-05 06:24:18 | 0 | ||||||
|
Tuskegee University; Alabama; USA Resource Report Resource Website |
Tuskegee University; Alabama; USA (RRID:SCR_000373) | university | A private, historically black university that offers degree programs at the undergraduate, graduate, doctoral and professional levels. The university has programs that include veterinarian studies, allied health, nursing, education | tuskegee, alabama, private, historically black, doctoral, professional, veterinarian |
is parent organization of: Tuskegee Center for Biomedical Research - Digital Imaging is parent organization of: Tuskegee Center for Biomedical Research Shared Instrumentation Core is parent organization of: Tuskegee University Computational Biology and Bioinformatics - Biomedical Information Management Services |
nlx_156108, ISNI:0000 0001 0707 9354, Wikidata:Q1682329, grid.265253.5 | https://ror.org/0137n4m74 | SCR_000373 | Tuskegee University | 2026-09-05 06:24:19 | 0 | ||||||||
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London School of Economics and Political Science; London; United Kingdom Resource Report Resource Website |
London School of Economics and Political Science; London; United Kingdom (RRID:SCR_000370) | LSE | university | A public research university in London with an emphasis in social science degree programs such as law, mathematics, public affairs and international history. The university offers degrees at the undergraduate, graduate and doctoral level. | social science, humanities, economics, undergraduate, graduate, postdoctoral, research | nlx_158056 | SCR_000370 | London School of Economics and Political Science, London School of Economics | 2026-09-05 06:24:19 | 0 | |||||||||
|
Tel Aviv University; Ramat Aviv; Israel Resource Report Resource Website |
Tel Aviv University; Ramat Aviv; Israel (RRID:SCR_000371) | university | A public university in Israel with degree programs in areas such as arts, engineering, humanities, the law and medicine at the undergraduate and graduate level. The university has affiliated but independent schools that focus on specific areas such as music, environmental studies, dentistry, social work, education and neuroscience. | israel, public, engineering, law, humanities, dentistry, social work, education, neuroscience, environment, music, medicine |
is related to: AgedBrainSYSBIO is parent organization of: MODENT - A Tool For Reconstructing Gene Regulatory Networks is parent organization of: ConSurf Database is parent organization of: HYDEN is parent organization of: TranspoGene is parent organization of: FlexProt: flexible protein alignment is parent organization of: Network-based Prediction of Human Tissue-specific Metabolism is parent organization of: ConSurf Database is parent organization of: RsiteDB- RNA binding sites database is parent organization of: Cross-Sectional and Longitudinal Aging Study is parent organization of: SPIKE |
nlx_45243 | SCR_000371 | TAU | 2026-09-05 06:24:18 | 0 | |||||||||
|
Lonza Resource Report Resource Website 500+ mentions |
Lonza (RRID:SCR_000377) | Lonza | commercial organization | A supplier of various biochemical products for research in pharmacy and biotechnology as well as the specialty ingredients market. Examples of products include active pharmaceutical ingredients, stem cell therapies, drinking water sanitizers and agriculture services and products. | supplier, biomaterial, biochemical, pharmacy, stem cell, agriculture |
is listed by: ScienceExchange is parent organization of: Lonza Viral Based Therapeutics |
grid.473847.b, ISNI: 0000 0004 4691 9813, SciEx_4981 | https://ror.org/00yqk5t74 | http://www.scienceexchange.com/facilities/lonza | SCR_000377 | 2026-09-05 06:24:18 | 966 | |||||||
|
University of Southern Queensland; Queensland; Australia Resource Report Resource Website |
University of Southern Queensland; Queensland; Australia (RRID:SCR_000374) | university | A public university in Australia that offers degree programs in business, law and education as well as health, engineering and the sciences at the undergraduate level. The university also does research at three research institutes and seven research centers which focus on a wide range of business, agricultural, scientific, environmental, and technological issues. | public, business, law, education, health, engineering, sciences, research, agriculture, technology, environment |
is parent organization of: Australian Digital Futures Institute is parent organization of: Fascinator is parent organization of: Integrated Content Environment |
ISNI:0000 0004 0473 0844, Wikidata:Q978124, nlx_46605, grid.1048.d, Crossref funder ID:501100001795 | https://ror.org/04sjbnx57 | SCR_000374 | USQ | 2026-09-05 06:24:18 | 0 | ||||||||
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rTANDEM Resource Report Resource Website |
rTANDEM (RRID:SCR_000409) | software resource | An R/Bioconductor package that interfaces the X!Tandem protein identification algorithm. | standalone software, mac os x, unix/linux, windows, r, mass spectrometry, proteomics |
is used by: shinyTANDEM is listed by: OMICtools has parent organization: Bioconductor |
PMID:24700319 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_03516 | SCR_000409 | rTANDEM - Interfaces the tandem protein identification algorithm in R | 2026-09-05 06:24:19 | 0 | |||||||
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Allegheny College; Pennsylvania; USA Resource Report Resource Website |
Allegheny College; Pennsylvania; USA (RRID:SCR_000369) | university | A private liberal arts college that offers degrees in social sciences, humanities and natural sciences at the undergraduate level. | private, liberal arts, social science, humanities, natural sciences, undergraduate | is parent organization of: Allegheny College Neuroscience | nlx_40570 | SCR_000369 | 2026-09-05 06:24:18 | 0 | ||||||||||
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NucleoFinder Resource Report Resource Website 1+ mentions |
NucleoFinder (RRID:SCR_000368) | NucleoFinder | software resource | A software for a statistical approach for the detection of nucleosome positions in a cell population. The software identifies important features of nucleosome organization such as the spacing downstream of active promoters and the enrichment and depletion of GC/AT dinucleotides of in vitro nucleosomes. | nucleusome, position, promoter, analysis, downstream, nucleotide, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
PMID:23297036 | THIS RESOURCE IS NO LONGER IN SERVICE | biotools:nucleofinder, OMICS_00510 | https://omictools.com/nucleofinder-tool, https://bio.tools/nucleofinder | SCR_000368 | 2026-09-05 06:24:18 | 1 | ||||||
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flowPeaks Resource Report Resource Website |
flowPeaks (RRID:SCR_000407) | software resource | Software for fast and automatic clustering to classify the cells into subpopulations based on finding the peaks from the overall density function generated by K-means. | software package, mac os x, unix/linux, windows, r, clustering, flow cytometry, gating, bio.tools |
is listed by: OMICtools is listed by: GitHub is listed by: bio.tools is listed by: Debian has parent organization: Bioconductor |
PMID:22595209 | Free, Available for download, Freely available | biotools:flowpeaks, OMICS_05604 | http://www.bioconductor.org/packages/devel/bioc/html/flowPeaks.html, https://bio.tools/flowpeaks | SCR_000407 | 2026-09-05 06:24:20 | 0 | |||||||
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TNO-DECO Resource Report Resource Website |
TNO-DECO (RRID:SCR_000440) | software resource | Matlab code for preprocessing gas chromatography mass spectrometry data. | matlab, mass spectrometry | is listed by: OMICtools | Free, Available for download, Freely available | OMICS_02660 | SCR_000440 | 2026-09-05 06:24:19 | 0 | |||||||||
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MiRdup Resource Report Resource Website 1+ mentions |
MiRdup (RRID:SCR_000316) | software resource | A software used for the validation of pre-miRNAs predictions as well as predict the final structure of mature miRNA. | pre-miRNA, miRNA, mRNA, splicing, predictions |
is listed by: OMICtools has parent organization: McGill University; Montreal; Canada |
PMID:23748953 | Free, Available for download, Freely available | OMICS_00404 | https://www.cs.mcgill.ca/~blanchem/mirdup/ | http://This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or any later version. | SCR_000316 | 2026-09-05 06:24:16 | 1 | ||||||
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WILEY Interdisciplinary Reviews Resource Report Resource Website |
WILEY Interdisciplinary Reviews (RRID:SCR_000392) | WIREs | data or information resource, portal, topical portal | Wiley Interdisciplinary Reviews series combines features of encyclopedic reference works and review journals in innovative online format. They are designed to promote cross-disciplinary research ethos while maintaining the highest scientific and presentational standards, but should be viewed first and foremost as evolving online databases of cutting-edge reviews. | encyclopedic reference works, review journals, databases of reviews, | nif-0000-10668 | http://www.wiley.com/WileyCDA/Section/id-370078.html | SCR_000392 | Wiley Interdisciplinary Reviews series | 2026-09-05 06:24:20 | 0 |
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