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https://edspace.american.edu/openbehavior/project/openfeeder/
Project related to studying reward and feeding behavior. Provides open source automatic feeding system that can be customized for food types from seeds to pellets.System integrates plexiglass tubes, Arduino Uno, motor driver, and piezo sensor to reliably deliver accurate amounts of food, and can also be built using 3D printed parts.
Proper citation: OpenFeeder (RRID:SCR_021552) Copy
Project related to auditory behavioral task data collection.Provided high throughput operant conditioning in mouse homecage system was developed by University of Maryland,College Park, scientists.Automated system for training up to hundreds of mice in auditory behavioral task features custom Matlab GUI running on desktop which connects to Raspberry Pi to administer auditory stimuli from USB soundcard and collects auditory data as well as licking data from water spout with commercially available capacitive sensors. Parts list and build instructions are readily available from paper and associated GitHub repository.
Proper citation: ToneBox (RRID:SCR_021548) Copy
https://github.com/ratcave/ratcave
Software 3D graphics python package for cognitive psychology experiments. Open source, cross platform Python library that adds 3D stimulus support to all OpenGL-based 2D Python stimulus libraries. These libraries include VisionEgg, Psychopy, Pyglet, and PyGam.
Proper citation: Ratcave (RRID:SCR_021599) Copy
https://github.com/mne-tools/mne-cpp
Software tool for real time processing of electrophysiological data.
Proper citation: MNE Scan (RRID:SCR_021530) Copy
https://github.com/yorambenshaul/optimouse
Software tool for analysis of mouse position data.Open source software to analyze positions of individual mice, specifically their nose positions, in behavioral arena with the goal of minimizing error.
Proper citation: Optimouse (RRID:SCR_021527) Copy
https://edspace.american.edu/openbehavior/project/optimouse/
Project related to individual mice positions analysis, specifically their nose positions. Includes software tool for analysis of mouse position data designed by Hebrew University scientists. Provides open source software to analyze positions of individual mice, specifically their nose positions, in behavioral arena with the goal of minimizing error.
Proper citation: Optimouse project (RRID:SCR_021463) Copy
https://edspace.american.edu/openbehavior/project/mousetrap/
Project related to mouse tracking and analysis of mouse movements during computerized lab experiments. Provides open source software plugin to record and analyze mouse movements.
Proper citation: Mousetrap project (RRID:SCR_021456) Copy
https://edspace.american.edu/openbehavior/project/medparse/
Project related to saving precise times of behavioral events.Provides software tool to read MedPC data into Python and Matlab.
Proper citation: MedParse project (RRID:SCR_021455) Copy
https://edspace.american.edu/openbehavior/project/offline-behavior-video-analysis/
Project related to visualizing and quantifying movement from pre-recorded videos. Provides software toolbox for visualizing and quantifying movement.Used for summarizing animal movement data as single image ( spectral time lapse algorithm) as well as automate analysis of animal movement data.
Proper citation: Quantifying Animal Movement from Pre-recorded Videos project (RRID:SCR_021436) Copy
https://edspace.american.edu/openbehavior/project/boris/
Project related to computer based review of previously recorded videos or live observations. Related to study of animal and human behavior. Provides open source, multiplatform standalone program that allows user specific coding environment for computer based review of previously recorded videos or live observations.Developed by scientists from University of Turin.
Proper citation: Behavioral Observation Research Interactive Software project (RRID:SCR_021434) Copy
https://edspace.american.edu/openbehavior/project/m-track/
Project related to tracking movement of labelled paws in grooming and freely behaving mice. Provides software toolbox for automated detection of forepaw trajectories in mice.
Proper citation: M-Track project (RRID:SCR_021433) Copy
https://edspace.american.edu/openbehavior/project/pathfinder/
Project to detect spatial navigation behavior in animals.Provides open source software for analyzing spatial navigation search strategies developed by University of British Columbia scientists.
Proper citation: Pathfinder project (RRID:SCR_021447) Copy
https://edspace.american.edu/openbehavior/project/autopilot/
Project related to behavioral experiments.Provides software Python framework for running behavioral experiments designed by University of Oregon scientists.
Proper citation: AutoPilot project (RRID:SCR_021448) Copy
https://edspace.american.edu/openbehavior/project/bonsai/
Project related to composing reactive and asynchronous data streams coming from video cameras, microphones, electrophysiology systems or data acquisition boards. Provides open source software tool as visual language for reactive programming.
Proper citation: Bonsai project (RRID:SCR_021443) Copy
https://edspace.american.edu/openbehavior/project/deepbehavior/
Project related to behavior tracking and analysis. Provides deep learning toolbox that automates taking high speed quality video to track behavior in rodents and humans.
Proper citation: DeepBehavior project (RRID:SCR_021387) Copy
https://edspace.american.edu/openbehavior/project/worm-behavior-platform/
Project related to sharing worm tracking data and analysis routines.Open access repository for storing, accessing, filtering data and analysis.
Proper citation: Worm Behavior Platform project (RRID:SCR_021420) Copy
https://edspace.american.edu/openbehavior/project/sleap/
Collection of tools to do video analysis in behavioral neuroscience applications.Offers open source software tools including SLEAP, LEAP and MotionMapper.
Proper citation: SLEAP, LEAP and MotionMapper project (RRID:SCR_021383) Copy
Project related to tracking individual animals in large collective groups.Provides algorithm and software for tracking individuals in large collectives of unmarked animals.Tracks animal identification and tracks when animals touch or cross paths in front of one another.
Proper citation: idtracker.ai project (RRID:SCR_021417) Copy
https://edspace.american.edu/openbehavior/project/cave/
Project related to calcium imaging.Provide open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data.
Proper citation: Calcium ActiVity Explorer project (RRID:SCR_021419) Copy
https://edspace.american.edu/openbehavior/project/toxtrac/
Project related to high speed tracking of animals.Provides software tool for tracking organisms.Can handle one or several animals in one or several environments.Used for fish, insects, rodents, etc.
Proper citation: ToxTrac project (RRID:SCR_021424) Copy
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