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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Redivis Resource Report Resource Website 10+ mentions |
Redivis (RRID:SCR_023111) | Redivis | data repository, service resource, software repository, software resource, storage service resource | Commercial collaborative research platform for hosting and analyzing datasets.Data platform for academic research. Redivis provides organizations with central hub where researchers can easily discover, access, and analyze their data. | Data platform, central hub, discover, access, analyze, data, academic research, hosting datasets, analyzing datasets | is related to: DataCite | Restricted | r3d100014398, 10.57761, SCR_024550 | https://search.datacite.org/repositories/sul.swbvyu, https://doi.org/10.57761/, https://dx.doi.org/10.57761, https://doi.org/10.17616/R31NJNLQ | SCR_023111 | Red Vis | 2026-09-05 06:30:20 | 14 | ||||||
|
MetaboAnalyst Resource Report Resource Website 10000+ mentions |
MetaboAnalyst (RRID:SCR_015539) | analysis service resource, data access protocol, data analysis service, production service resource, service resource, software resource, web service | Web server for statistical, functional and integrative analysis of metabolomics data. Web based tool suite used for metabolomic data processing, normalization, multivariate statistical analysis, and data annotation, biomarker discovery and classification. | statistical, functional, integrative, analysis, metabolomics, data, processing, annotation, biomarker, discovery |
is listed by: SoftCite has parent organization: McGill University; Montreal; Canada has parent organization: University of Alberta; Alberta; Canada |
Alberta Ingenuity Fund ; Alberta Life Sciences Institute ; Canada Research Chairs Program ; Canadian Institutes for Health Research ; Genome Alberta ; Genome Canada ; McGill University ; Natural Sciences and Engineering Research Council of Canada |
PMID:29762782 | Free, Available for download, Freely available, Tutorial available, Acknowledgement requested | SCR_016717 | http://old.metaboanalyst.ca/MetaboAnalyst/ | SCR_015539 | MetaboAnalyst 4.0, MetaboAnalyst 3.0 | 2026-09-05 06:27:56 | 13689 | |||||
|
Autogrid Resource Report Resource Website 1000+ mentions |
Autogrid (RRID:SCR_015982) | data analysis software, data processing software, simulation software, software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on February 23,2023.Software for automated docking analysis to precalculate the set of grids describing the target protein. It is a part of automated molecular modeling simulation software AutoDock. | software, automated, docking, analysis, tool, precalculate, set, grid, ligand, protein, target, molecular, simulation, modeling, protein-ligand interaction, data |
is listed by: SoftCite is related to: AutoDock has parent organization: The Scripps Research Institute Labs and Facilities |
The Scripps Research Institute ; San Diego ; California |
PMID:16862531 | THIS RESOURCE IS NO LONGER IN SERVICE | http://mgl.scripps.edu/forum | SCR_015982 | Autogrid toolkit, Autogrid: automated grid | 2026-09-05 06:28:01 | 1261 | ||||||
|
Bamtools Resource Report Resource Website 100+ mentions |
Bamtools (RRID:SCR_015987) | data analysis software, data management software, data processing software, software application, software resource, software toolkit | Software that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating genome sequence alignment files in the BAM and SAM formats. It is used for research analysis and management of data produced by sequencing technologies. | c++, api, sam, bam genome, sequence, alignment, data, analysis, management, command, manipulation, binary, map, bio.tools |
is listed by: Debian is listed by: bio.tools is listed by: OMICtools |
NHGRI R01 HG004719; NHGRI RC2 HG005552 |
PMID:21493652 DOI:10.1093/bioinformatics/btr174 |
biotools:bamtools, OMICS_11315 | https://bio.tools/bamtools, https://sources.debian.org/src/bamtools/ | SCR_015987 | API:Application Programming Interface, BAM:Binary Alignment Map, SAM:Sequence Alignment Map | 2026-09-05 06:28:02 | 344 | ||||||
|
Blixem Resource Report Resource Website 1+ mentions |
Blixem (RRID:SCR_015994) | alignment software, data processing software, image analysis software, software application, software resource | Software for sequence alignments that displays multiple match sequences aligned against a single genomic reference sequence. It can be used for manipulation, display and annotation of genomic data, to check the quality of an alignment, to find missing/misaligned sequence, and to identify splice sites and polyA sites. | software, sequence, alignment, annotation, genomic, reference, data, display, manipulation, DNA |
is related to: SEQtools has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
NHGRI U54 HG00455; Wellcome Trust Grant 098051 |
PMID:26801397 | Free, Available for download | SCR_015994 | SEQtools Blixem | 2026-09-05 06:28:02 | 2 | |||||||
|
auto-scoring Resource Report Resource Website |
auto-scoring (RRID:SCR_016015) | data processing software, data visualization software, software application, software resource | Visualization software that calculates derived scores for the electronic record system REDCap (Research Electronic Data Capture) to build and manage online surveys and databases. Used in the ABCD-STUDY (Adolescent Brain Cognitive Development - STUDY) report framework. | visual, data, processing, calculate, derived, score, electronic, record, system, data, capture, research | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016015 | 2026-09-05 06:28:02 | 0 | |||||||||
|
little-man-task Resource Report Resource Website |
little-man-task (RRID:SCR_016018) | data management software, data processing software, data transfer software, software application, software resource | Software tool to manage data and derived results. It is used for import of derived measures into REDCap (Research Electronic Data Capture). | capture, data, manage, derive, measure, abcd, study | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016018 | 2026-09-05 06:28:02 | 0 | |||||||||
|
redcap-completion Resource Report Resource Website |
redcap-completion (RRID:SCR_016019) | data management software, software application, software resource | Software to measure item level completion in a large REDCap project. It provides a web-interface to review data and it is used in the ABCD project to assess data collection sites for the reached level of completion. | measure, item, level, completion, large, electronic, data, capture, research, review, data, collection |
is related to: University of California at San Diego; California; USA works with: REDCap |
NIDA U24 DA041123 | Free, Available for download | SCR_016019 | 2026-09-05 06:28:02 | 0 | |||||||||
|
aux-file-upload Resource Report Resource Website |
aux-file-upload (RRID:SCR_016026) | data management software, data processing software, data transfer software, software application, software resource | Software application to upload functional MR imaging runs produce auxilary data that can be collected centrally. Connects to a subject database research electronic data capture (REDCap). | upload, data, transmitted, addition, basic, calculation, subject, database, research, electronic, capture, imaging, session, abcd |
is related to: University of California at San Diego; California; USA works with: ABCD Study works with: REDCap |
NIDA U24 DA041123 | Free, Available for download | SCR_016026 | 2026-09-05 06:28:02 | 0 | |||||||||
|
FIONA-QC-PHANTOM Resource Report Resource Website 1+ mentions |
FIONA-QC-PHANTOM (RRID:SCR_016024) | data analysis software, data processing software, software application, software resource | Software for online quality control operations performed on Phantom MRI data. It checks the accuracy and reproducibility of data. | application, quality, control, operation, phantom, MRI, data, accurate, reproducible, online, qc |
is related to: University of California at San Diego; California; USA is related to: ABCD Study works with: Diffusion MRI - In-vivo and Phantom Data |
NIDA U24 DA041123 | Free, Available for download | SCR_016024 | 2026-09-05 06:28:02 | 1 | |||||||||
|
nih-ipad-app-end-point Resource Report Resource Website |
nih-ipad-app-end-point (RRID:SCR_016029) | data acquisition software, data processing software, data storage software, software application, software resource | Data collection software for centrally and securely storing data from the NIH iPad application. It allows users to capture results from multiple iPads at a central location. | abcd, collect, tool, central, storing, data, NIH, iPad, application, secure, capture, result, multiple, location | is related to: University of California at San Diego; California; USA | NIDA U24 DA041123 | Free, Available for download | SCR_016029 | 2026-09-05 06:28:02 | 0 | |||||||||
|
DIAMOND Resource Report Resource Website 100+ mentions |
DIAMOND (RRID:SCR_016071) | data analysis software, data processing software, sequence analysis software, software application, software resource | Software that performs sequence alignment for protein and translated DNA searches and functions. Used for high performance analysis of big sequence data, protein-protein search, and DNA-protein search. | sequence, aligner, high, performance, analysis, big, data, protein, DNA, bio.tools |
is listed by: bio.tools is listed by: Debian is listed by: OMICtools has parent organization: University of Tubingen; Tubingen; Germany |
PMID:25402007 DOI:10.1038/nmeth.3176 |
Free, Available for download | OMICS_08011, biotools:diamond | https://bio.tools/diamond, https://sources.debian.org/src/diamond-aligner/ | SCR_016071 | 2026-09-05 06:28:03 | 489 | |||||||
|
Datamash Resource Report Resource Website 1+ mentions |
Datamash (RRID:SCR_016067) | data analysis software, data processing software, software application, software resource | Software for a command-line interface which performs basic numeric, textual and statistical operations on input textual data files. It is designed to aid researchers in automating analysis pipelines, without writing code or short scripts. | command-line, interface, basic, numerical, textual, statistical, operation, input, data, files, automate, analysis, pipelines | is listed by: Debian | Free Software Foundation (FSF) | Free, Available for download | https://sources.debian.org/src/datamash/ | SCR_016067 | GNU Datamash | 2026-09-05 06:28:03 | 4 | |||||||
|
GARLI Resource Report Resource Website 100+ mentions |
GARLI (RRID:SCR_016117) | GARLI | data analysis software, data processing software, software application, software resource | Software application for inferring phylogenetic trees and analysis of molecular sequence data using the maximum-likelihood criterion. It implements nucleotide, amino acid and codon-based models of sequence evolution. | inference, phylogenetic, tree, analysis, molecular, sequence, data, maximum, likelihood, criterion, nucleotide, amino acid, codon, model, evolution |
is listed by: Debian is listed by: OMICtools |
Free, Available for download, Freely available | OMICS_04234 | https://code.google.com/archive/p/garli/, https://sources.debian.org/src/garli/ | SCR_016117 | Genetic Algorithm for Rapid Likelihood Inference | 2026-09-05 06:28:04 | 280 | ||||||
|
gdpc Resource Report Resource Website |
gdpc (RRID:SCR_016119) | data processing software, data visualization software, software application, software resource | Software application for visualizing output data from molecular dynamics simulations. It can be customized to read almost any input file format, animate it, and output images of each frame. | visualizing, output, data, molecular, dynamic, simulation, animation, visualization |
is listed by: Debian is listed by: OMICtools |
Free, Available for download, Freely available | OMICS_19946 | https://sources.debian.org/src/gdpc/ | http://www.frantz.fi/software/gdpc.php, https://directory.fsf.org/wiki/Gdpc | SCR_016119 | 2026-09-05 06:28:04 | 0 | |||||||
|
bioSyntax Resource Report Resource Website 1+ mentions |
bioSyntax (RRID:SCR_016207) | data management software, software application, software resource | Software for syntax highlighting for computational biology. | computation, syntax, language, code, scientific, data, workflow, bio.tools |
is listed by: bio.tools is listed by: Debian is listed by: OMICtools |
DOI:10.1186/s12859-018-2315-y | Free, Available for download | biotools:biosyntax, OMICS_25594 | https://github.com/bioSyntax/bioSyntax, https://bio.tools/biosyntax, https://sources.debian.org/src/biosyntax/ | SCR_016207 | 2026-09-05 06:28:05 | 2 | |||||||
|
PhonBank Resource Report Resource Website 1+ mentions |
PhonBank (RRID:SCR_016312) | data repository, service resource, storage service resource | Database for study of early phonological development using Phon program. Child phonology component of TalkBank system. | Data, early, phonological, development, Phon, program, child |
is recommended by: National Library of Medicine is related to: TalkBank |
NICHD R01 HD051698 | Free, Freely available | SCR_016312 | 2026-09-05 06:28:06 | 2 | |||||||||
|
National Children's Study (NCS) Archive Resource Report Resource Website |
National Children's Study (NCS) Archive (RRID:SCR_016311) | NCS Archive | data repository, service resource, storage service resource | Data and sample repository for National Children's Study. Provides access to data and samples collected from over 5,600 U.S. birth families to study environmental influences on child health and development. Data and biological and environmental samples are freely available, with approved request, for scientific research. | data, repository, children, child, family, study, research, health, pediatric, growth, development | is recommended by: National Library of Medicine | NICHD | Restricted | https://ncsarchive.s-3.net/ | SCR_016311 | National Children's Study, National Children's Study Archive | 2026-09-05 06:28:06 | 0 | ||||||
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cOMet Resource Report Resource Website 1+ mentions |
cOMet (RRID:SCR_016276) | data management software, software application, software resource | Software for error correction of optical mapping data. | optical, mapping, error, correction, data, visual, image | Free, Available for download | SCR_016276 | 2026-09-05 06:28:06 | 3 | |||||||||||
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NeuroXM Brain Science Suite Resource Report Resource Website |
NeuroXM Brain Science Suite (RRID:SCR_016372) | data analysis software, data processing software, data visualization software, software application, software resource, software toolkit | Software toolkit for semantic integration of multi-modal brain data. It is used to collect, structure, connect, analyze and re-use brain data. | semantic, data, graph, neuroscience, neuroanatomy, ontology, circuitry, pathway, multimodal, brain | Commercially available | SCR_016372 | Brain Science Suite, NeuroXM, NeuroXM Suite | 2026-09-05 06:28:07 | 0 |
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