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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Lab Streaming Layer Resource Report Resource Website 50+ mentions |
Lab Streaming Layer (RRID:SCR_017631) | LSL | software application, software resource | System for unified collection of measurement time series in research experiments that handles networking, time synchronization, near real time access as well as optionally centralized collection, viewing and disk recording of data. System for synchronizing streaming data for live analysis or recording. | Synchronizing, streaming, data, live, analysis, recording, collection, time, series, EEG | has parent organization: University of California at San Diego; California; USA | Army Research Laboratory ; NINDS R01 NS047293 |
Free, Freely available | SCR_017631 | Lab Streaming Layer | 2026-09-05 06:33:03 | 86 | |||||||
|
scVelo Resource Report Resource Website 100+ mentions |
scVelo (RRID:SCR_018168) | software resource, software toolkit | Software package for estimating and analyzing RNA velocities in single cells using dynamical modeling. RNA Velocity using dynamical modeling. | RNA veloscity, analysis, single cell, dynamic modeling, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:scVelo | https://scvelo.readthedocs.io/, https://bio.tools/scVelo | SCR_018168 | scvelo, single-cell RNA Velocity generalized to transient cell states | 2026-09-05 06:33:04 | 246 | |||||||
|
Scrattch.Hicat Resource Report Resource Website 10+ mentions |
Scrattch.Hicat (RRID:SCR_018099) | data analytics software, software application, software resource | Software R package as hierarchical, iterative clustering for analysis of transcriptomics data.Used for single cell RNA-seq analysis for transcriptomic type characterization from Allen Institute. | Hierarchical, iterative clustering, analysis, transcriptomics, data, single cell RNAseq, Allen Institute | has parent organization: Allen Institute | Free, Available for download, Freely available | SCR_018099 | Scrattch Hierarchical, Iterative Clustering for Analysis of Transcriptomics | 2026-09-05 06:33:03 | 32 | |||||||||
|
QGIS Resource Report Resource Website 100+ mentions |
QGIS (RRID:SCR_018507) | software application, software resource | Open source cross platform desktop geographic information system application that supports viewing, editing, and analysis of geospatial data. Functions as geographic information system software, allowing users to analyze and edit spatial information, in addition to composing and exporting graphical maps. | Geographic information system, viewing, editing, analysis, geospatial data, spatial information analysis, graphical map, bio.tools |
is listed by: Debian is listed by: bio.tools |
Free, Available for download, Freely available | biotools:QGIS | https://bio.tools/QGIS | SCR_018507 | 2026-09-05 06:33:04 | 488 | ||||||||
|
maser Resource Report Resource Website 1+ mentions |
maser (RRID:SCR_023484) | software resource, software toolkit | Software package provides functionalities for downstream analysis, annotation and visualizaton of alternative splicing events. Mapping alternative splicing events to proteins. | Mapping alternative splicing events to proteins, alternative splicing events, analysis, annotation, visualizaton | Free, Available for download, Freely available | https://bioconductor.org/packages/maser/ | SCR_023484 | Mapping Alternative Splicing Events to pRoteins | 2026-09-05 06:33:14 | 7 | |||||||||
|
McGill University Advanced BioImaging Facility (ABIF) Resource Report Resource Website 50+ mentions |
McGill University Advanced BioImaging Facility (ABIF) (RRID:SCR_017697) | ABIF | access service resource, core facility, service resource | Core offers light microscopy platforms providing guidance to researchers with their projects from sample preparation to data analysis, expertise in cellular imaging including live cell imaging, FRAP, Fluorescence Lifetime Imaging Microscopy (FLIM), FRET, FCS, image correlation spectroscopy, TIRF, spectral imaging, lattice lightsheet, stimulated emission depletion (STED), high content screening, cellular image analysis, and custom image analysis, consultations, image processing, image analysis and preparation of data for publication. | Light, microscopy, cellular, imaging, live cell, FRAP, FLIM, FRET, FCS, spectroscopy, TIRF, lattice lightsheet, STED, analysis, data, core, service |
is listed by: ABRF CoreMarketplace has parent organization: McGill University; Montreal; Canada |
ABRF_118, SCR_017719 | SCR_017697 | Advanced BioImaging Facility, McGill University Advanced BioImaging Core Facility | 2026-09-05 06:34:10 | 68 | ||||||||
|
Brown University Transgenic and Gene Targeting Core Facility Resource Report Resource Website |
Brown University Transgenic and Gene Targeting Core Facility (RRID:SCR_017690) | MTGTF | access service resource, core facility, service resource | MTGTF is to support the investigators in using genetically modified mouse models in Brown University, affiliated hospitals and academic institutions in Rhode Island and other states. Provides services of molecular design and generation of transgenic and knock-out mouse models as well as general advice on use and management of such models. Conventional ES cell gene-targeting system is employed to serve as alternative or to fill the limitations of CRISPR/Cas9 system. Routine services include genotype analysis, sperm or embryo cryopreservation and storage, rederivation, in vitro fertilization (IVF). Other services, such as mouse vasectomy, embryo transfer, colony scale-up, intracytoplasmic sperm injection (ICSI) are also available. New services requiring MTGTF resources can be created through request. | Genetically, modified, mouse, model, support, molecular, design, transgenic, knock-out, ES, cell, targeting, system, CRISPR/Cas9, genotype, analysis, sperm, embryo, cryopreservation, storage, fertilization, vasectomy, service, core | NIGMS P30 GM103410 | Open | ABRF_79, SCR_017708 | SCR_017690 | Mouse Transgenic and Gene Targeting Facility | 2026-09-05 06:34:10 | 0 | |||||||
|
16p_resource Code Resource Report Resource Website 1+ mentions |
16p_resource Code (RRID:SCR_016845) | software resource, source code | Software tool as a code to support figure generation for the manuscript by Roth, Muench et al. Used to perform analysis. | code, support, figure, generation, analysis, manuscript, Roth, Muench | Free, Available for download, Freely Available | SCR_016845 | 2026-09-05 06:34:09 | 1 | |||||||||||
|
Emory Epithelial Pathobiology Research Development Center Image Analysis Core Resource Report Resource Website |
Emory Epithelial Pathobiology Research Development Center Image Analysis Core (RRID:SCR_015917) | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 5th, 2023. Core facility for the Emory Epithelial Pathobiology Research Development Center. | epithelial, pathobiology, research, development, image, analysis | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_015917 | 2026-09-05 06:34:09 | 0 | |||||||||||
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Stanford Diabetes Research Center Diabetes Genomics Analysis Core Resource Report Resource Website 1+ mentions |
Stanford Diabetes Research Center Diabetes Genomics Analysis Core (RRID:SCR_016213) | GDAC, SDRC-GDAC, SDRC | access service resource, core facility, service resource | Core facility that offers library preparation and sequencing services on a variety of platforms - Illumina HiSeq 4000, MiSeq, HiSeq 2500 and PacBio Sequel - as well as bioinformatics analysis. It can sequence a variety of commercial sample preparation kits as well as custom workflows. DGAC provides access to high throughput sequencing and analysis to researchers at the Stanford Diabetes Research Center. | library, sequence, workflow, bioinformatic, gene, analysis, sequencing |
is related to: Stanford Diabetes Research Center Diabetes Immune Monitoring Core is related to: Stanford Diabetes Research Center Stanford Islet Research Core is related to: Stanford Diabetes Research Center Diabetes Clinical and Translational Core has parent organization: Stanford University; Stanford; California is organization facet of: Stanford Diabetes Research Center |
NIDDK P30 DK116074 | Available to external user | SCR_016213 | SDRC, Genomics Analysis Core, Diabetes Genomics Analysis Core | 2026-09-05 06:34:09 | 1 | |||||||
|
Massachusetts University Medical School Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Massachusetts University Medical School Bioinformatics Core Facility (RRID:SCR_017701) | BioCore | access service resource, core facility, service resource | Core to evaluate, select, and implement computational solutions for analysis of biological data. | Bioinformatics, core, analysis, genomic, data | Restricted | ABRF_129, SCR_017716 | SCR_017701 | Bioinformatics Core | 2026-09-05 06:34:11 | 5 | ||||||||
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University of Cambridge Bioinformatics and Computational Biology Services Core Facility Resource Report Resource Website |
University of Cambridge Bioinformatics and Computational Biology Services Core Facility (RRID:SCR_017154) | access service resource, core facility, service resource | Provides assistance in characterization and analysis of genomic variants, next generation sequencing data processing and analysis, computational systems biology, HPC and big data software development for genome scale data analysis, machine learning and data mining, cloud based solutions to process and manage large amounts of data, databases and genome scale data visualization. | bioinformatics, NGS, data, mining, machine, learning, computation, service, analysis | has parent organization: University of Cambridge; Cambridge; United Kingdom | Restricted | SCR_017154 | Computational Biology, Computational Biology Services, Core Facility, Services, Bioinformatics, University of Cambridge | 2026-09-05 06:34:10 | 0 | |||||||||
|
University of Illinois at Chicago Electron Microscopy Core Facility Resource Report Resource Website |
University of Illinois at Chicago Electron Microscopy Core Facility (RRID:SCR_017763) | RRC EMC | access service resource, core facility, service resource | Core provides electron microscopy imaging and analytical characterization, surface analysis by XPS or Raman, access to instrumentation, training, and service for using scanning (SEM), transmission (TEM) and scanning transmission (STEM) electron microscopy, surface analysis and vibrational spectroscopy, specimen preparation. | Electron, microscopy, imaging, analytical, characterization, surface, analysis, training, vibrational, spectroscopy, speciment, preparation, service, core | Open | ABRF_295 | SCR_017763 | Electron Microscopy Core | 2026-09-05 06:34:12 | 0 | ||||||||
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Northwestern University Mary Beth Donnelley Clinical Pharmacology Core Facility Resource Report Resource Website |
Northwestern University Mary Beth Donnelley Clinical Pharmacology Core Facility (RRID:SCR_017768) | access service resource, core facility, service resource | Core provides quantitative mass spectrometry based support for in vitro studies and both preclinical and clinical studies of variety of small molecules, including cancer chemotherapeutic agents, analgesics, and antidepressants. Expertise includes optimizing design, conduct, analysis, interpretation, and reportage of pharmacokinetic studies. Helps with biological sample preparation, quantitative mass spectrometric drug concentration measurement, and drug concentration versus time data modeling. Small molecule concentrations in plasma and other body fluids are measured using Sciex 6500 QTrap with UPLC and nano LC or an Agilent HPLC system linked to Applied Biosystems API 3000 triple quadrupole mass spectrometer after sample preparation by, for example, solid-phase extraction. Drug concentration versus time relationships are fitted to various compartmental pharmacokinetic models using commercially available and specialized software. | Clinical, pre clinical, pharmacology, quantitative, mass, spectrometry, cancer, chemotherapeutic, agent, analgesic, antidepressant, design, analysis, pharmacokinetic, study, drug, concentratiion, measure, sample, preparation, service, core | NIH Office of the Director S10 OD021786 | Restricted | ABRF_326 | SCR_017768 | Mary Beth Donnelley Clinical Pharmacology Core Facility | 2026-09-05 06:34:12 | 0 | ||||||||
|
Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility Resource Report Resource Website 100+ mentions |
Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility (RRID:SCR_017801) | access service resource, core facility, service resource | Core mass spec and proteomic services include open access lab for trained users with GC/MS, LC/MS, high resolution LC/MS, and MALDI-TOF instruments, help with intact protein analysis, targeted quantitation, drug discovery support, pathway analysis, protein interactions, FFPE tissue analysis, both labeled and label-free proteomics, and more. Please contact SUMS to discuss these and other custom projects including new application development. | Mass, spectrometry, proteomics, training, analysis, targeted, quantitation, drug, discovery, pathway, protein, interaction, service, USEDit, ABRF |
uses: Waters: SQD2 LC/MS system uses: Waters: Select Series Cyclic IMS uses: Thermo Fisher: Exactive Orbitrap LC/MS system uses: Thermo Fisher: LTQ XL LC/MS system uses: Thermo Fisher: Orbitrap Fusion nanoLC/MS system uses: Thermo Fisher: QE-HFX mass spectrometer uses: Thermo Fisher: Vantage LC/MS mass spectrometer uses: Stanford Sciex 7500+ Triple Quadrupole LC/MS system uses: Waters: Quattro Premier LC/MS system uses: Stanford Shimadzu 8030 LC/MS mass spectrometer uses: Bruker: Scion TQ GC/MS mass spectrometer uses: Bruker: micrOTOF-Q II LC/MS system uses: Agilent: 7890/5975 GC/MS system uses: Thermo Fisher: Orbitrap Eclipse nanoLC/MS system uses: Thermo Fisher: Exploris 480 nanoLC/MS system uses: Thermo Fisher: Exploris 240 LC/MS system uses: Waters: Andrew Pipetting Robot uses: Agilent: 6495 Triple Quadrupole LC/MS uses: Waters: Select Series MRT uses: Stanford Bruker timsTOF Ultra nanoLC/MS uses: Thermo Fisher: LTQ-Orbitrap Elite nano LC/MS system uses: Bruker: Microflex MALDI TOF mass spectrometer uses: Waters: Xevo TQ-XS mass spectrometer is listed by: ABRF CoreMarketplace has parent organization: Stanford University; Stanford; California |
NCI CA124435; NIH S10 OD026962; NIH S10 RR027425; Vincent and Stella Coates |
Open | ABRF_489 | https://coremarketplace.org/?FacilityID=489 | SCR_017801 | Vincent Coates Foundation Mass Spectrometry Laboratory | 2026-09-05 06:34:12 | 117 | ||||||
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Northwestern University Biological Imaging Core Facility Resource Report Resource Website 50+ mentions |
Northwestern University Biological Imaging Core Facility (RRID:SCR_017767) | BIF | access service resource, core facility, service resource | Shared use and training facility. Servies include Confocal Laser Scanning Microscopy, DIC (Differential Interference Contrast Microscopy), FCS (Fluorescence Correlation Spectroscopy), FLIP (Fluorescence-Loss-In-Photobleaching), FRAP (Fluorescence Recovery After Photobleaching),FRET (Fluorescence/ Forster Resonance Energy Transfer),Live-cell Imaging,Phase Contrast Microscopy,Widefield Fluorescence Microscopy,Image Processing and Analysis. Services include poster printing, and specimen preparation. Provides training for most instruments. Instruments include Leica DM6B Fluorescent Microscope (Hogan 5-112), Leica TCS SP8 Confocal Microscope (Hogan 5-128),Leica SP5 II Confocal Microscope (Hogan 5-114),Leica Spinning Disk Confocal Microscope (Hogan 5-113),DeltaVision Deconvolution Microscope (Hogan 5-111),Olympus IX83 Inverted Fluorescent Microscope (Silverman Hall 1-567),Olympus IX53 Inverted Color Microscope (Silverman Hall 1-567), LionHeart Automated Microscope BioTeck (Hogan 5-110). | Imaging, training, speciment, preparation, poster, printing, microscopy, image, analysis, light, confocal, fluorescent, microsope, service, core, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Northwestern University; Illinois; USA |
Open | SCR_017875, SCR_018269, ABRF_725, ABRF_306, ABRF_855 | https://coremarketplace.org/?FacilityID=855 | SCR_017767 | Northwestern University Biological Imaging Facility, Advanced Molecular Imaging Facility | 2026-09-05 06:34:12 | 77 | ||||||
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Nebraska University Medical Center Epigenomics Core Facility Resource Report Resource Website |
Nebraska University Medical Center Epigenomics Core Facility (RRID:SCR_017800) | ECF | access service resource, core facility, service resource | Core assists with epigenetic analysis including DNA Methylation, Chromatin Immunoprecipitation and Real Time Quantitative PCR gene expression analysis. Services include DNA Methylation Analysis, Specific Genomic Location Analysis:Methylation Specific PCR,Bisulfite Sequencing,Bisulfite Pyrosequencing,Qiagen PyroMark Pyrosequencer Instrumentation;Genome Wide Analysis:High Throughput Sequencing Methylation Analysis, Methyl-Sensitive Cut Counting (MSCC),Methyl CpG Binding Domain - Isolated Genome Sequencing (MiGS);Chromatin Immunoprecipitation Analysis (ChIP):Analysis of Histone Modifications,DNA-Protein Interactions,Chromatin Positions analyzed using:Quantitative PCR Analysis (Real-Time QPCR),High Throughput Sequencing Analysis (ChIP-Seq);Gene Expression Analysis (QPCR):Real-Time Quantitative PCR Gene Expression. | Epigenetic, analysis, DNA, methylation, ChIP, RT PCR, gene, expression, service, core | Open | ABRF_458 | SCR_017800 | Epigenomics Core Facility | 2026-09-05 06:34:12 | 0 | ||||||||
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Northwestern University Cancer Center Flow Cytometry Core Facility Resource Report Resource Website |
Northwestern University Cancer Center Flow Cytometry Core Facility (RRID:SCR_017766) | access service resource, core facility, service resource | Provides 6 cell sorters and 5 benchtop analyzers. Helps investigators to define their projects in the early stages of development to make optimal and efficient use of flow cytometry. Educates ALL users (faculty and staff) in the science and technology of flow cytometry. | Flow, cytometry, analysis, training, service, core | NCI CA060553; NIH Office of the Director S10 OD011996 |
Restricted | ABRF_315 | SCR_017766 | Robert H. Lurie Comprehensive Cancer Center Flow Cytometry Core Facility | 2026-09-05 06:34:12 | 0 | ||||||||
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Northwestern University School of Medicine Lurie Cancer Center Pathology Core Facility Resource Report Resource Website 1+ mentions |
Northwestern University School of Medicine Lurie Cancer Center Pathology Core Facility (RRID:SCR_017769) | PCF | access service resource, core facility, service resource | Centralized, comprehensive, core laboratory providing histology, immunohistochemistry, molecular analysis and extraction and microscopic evaluation services for human tissue-based studies. Serves integral marker studies that require biomarker-based treatment arm assignment. Performs procurement of fresh biospecimens for clinical trials and biobanking. | Pathology, histology, immunohistochemistry, molecular, analysis, extraction, microscopic, evaluation, human, tissue, biobanking, service, core | NCI CA060553 | ABRF_333 | SCR_017769 | Pathology Core Facility | 2026-09-05 06:34:12 | 3 | ||||||||
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Hunter College Digital Bio-Imaging Core Facility Resource Report Resource Website |
Hunter College Digital Bio-Imaging Core Facility (RRID:SCR_017774) | access service resource, core facility, service resource | Core provides access to instruments, ranging from simple white light wide field microscopes to fluorescent multidimensional super resolution and confocal imaging systems. Provides expertise in areas of microscopy including laser scanning confocal microscopy, super resolution microscopy, two photon microscopy. Helps with image analysis software packages, including, Imaris, Volocity, Autoquant, MetaMorph, and NIS-Elements. | Bioimaging, microscopy, image, analysis, service, core | NIMHHD MD007599 | Restricted | ABRF_347 | SCR_017774 | BioImaging Facility | 2026-09-05 06:34:12 | 0 |
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