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http://i122server.vu-wien.ac.at/CANGS1.1/
A user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies.
Proper citation: CANGS (RRID:SCR_011837) Copy
http://www.utexas.edu/pharmacy/
The College of Pharmacy at The University of Texas at Austin is one of the premier institutions of pharmaceutical education and research in the country. Our college is a national leader in pharmacy education with a curriculum designed to prepare pharmacy graduates for lifelong learning and leadership capabilities as drug therapy managers in the nation's healthcare system. The pharmacist of the 21st century has significant responsibility for managing drug therapy, counseling patients on proper use of medications, and monitoring drug therapy outcomes.
Proper citation: University of Texas at Austin College of Pharmacy (RRID:SCR_011717) Copy
http://code.google.com/p/condetri/
Software tool as content dependent read trimmer for Illumina data. Content dependent read trimming software for Illumina/Solexa sequencing data.
Proper citation: ConDeTri (RRID:SCR_011838) Copy
UTEP officially opened in the fall of 1914 and is the second oldest institution in The University of Texas System.
Proper citation: University of Texas at El Paso (RRID:SCR_011718) Copy
http://www.cbcb.umd.edu/software/quake/
A software package to correct substitution sequencing errors in experiments with deep coverage (e.g. >15X), specifically intended for Illumina sequencing reads.
Proper citation: Quake (RRID:SCR_011839) Copy
Public research university in San Antonio, Texas.
Proper citation: University of Texas at San Antonio; Texas; USA (RRID:SCR_011719) Copy
Software providing a framework for collecting, storing, and accessing data produced by a wide variety of experiments.
Proper citation: SBEAMS (RRID:SCR_011830) Copy
A software package for visualizing data and information. It visualizes data in a circular layout - this makes Circos ideal for exploring relationships between objects or positions.
Proper citation: Circos (RRID:SCR_011798) Copy
http://www.bioinformatics.babraham.ac.uk/projects/sierra/
Web based Laboratory Information Management System (LIMS) system which can be used to track samples and distribute results within small sequencing facility. Provides simple way to track samples within facility and return sequencing, mapping and QC results to users.
Proper citation: Babraham Sierra (RRID:SCR_011831) Copy
Public research university located in Sydney, Australia.
Proper citation: University of Technology at Sydney; New South Wales; Australia (RRID:SCR_011711) Copy
http://www.h-invitational.jp/g-compass/
It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome alignments pursuing higher coverage.
Proper citation: G-compass (RRID:SCR_011799) Copy
https://code.google.com/p/discovering-cse/
Software for discovering motifs that induce sequencing errors.
Proper citation: discovering-cse (RRID:SCR_011832) Copy
University of Tennessee System is comprised of campuses at Knoxville, Chattanooga, Pulaski and Martin; Health Science Center at Memphis; Space Institute at Tullahoma; and statewide Institute of Agriculture and Institute for Public Service.
Proper citation: University of Tennessee; Tennessee; USA (RRID:SCR_011712) Copy
https://sites.google.com/site/moleculetagtoolbox/
A software package for building accurate ConSeqs from tagged reads.
Proper citation: MT-Toolbox (RRID:SCR_011833) Copy
http://ftp://ftp.pasteur.fr/pub/gensoft/projects/AlienTrimmer/
Allows detecting and removing multiple alien sequences in both ends of sequence reads.
Proper citation: AlienTrimmer (RRID:SCR_011835) Copy
http://www.usciences.edu/academics/collegesDepts/pcp.aspx
Pharmaceutical education began at Philadelphia College of Pharmacy (PCP), the first such institution in North America. With nearly two centuries of experience in pharmacy and science and thousands of alumni working in the healthcare industry, the world turns to PCP graduates for advice. From undergraduate majors to graduate degrees to our esteemed PharmD program, you can learn where the founders (alumni such as McNeil, Lilly, Rorer, Wyeth, Warner, Burroughs, and Wellcome) of six of the top pharmaceutical companies in the world got their education. Since 1821, they have been preparing professionals in pharmacy practice, science, and health care. There is no better place than PCP to prepare you for a lifelong career in the healthcare industry.
Proper citation: University of the Sciences in Philadelphia College of Pharmacy (RRID:SCR_011728) Copy
Public university in Tyler, Texas. Founded in 1971, it is a part of the University of Texas System.
Proper citation: University of Texas at Tyler; Texas; USA (RRID:SCR_011720) Copy
http://hiv.sanbi.ac.za/software/qtrim
A next generation sequence quality trimming tool.
Proper citation: QTrim (RRID:SCR_011842) Copy
https://github.com/najoshi/sabre
Software tool to demultiplex barcoded reads into separate files. Works on both single-end and paired-end data in fastq format. Used in next generation sequencing to analyze a broad range of data.
Proper citation: sabre (RRID:SCR_011843) Copy
https://github.com/vsbuffalo/scythe
Scythe uses a Naive Bayesian approach to classify contaminant substrings in sequence reads.
Proper citation: Scythe (RRID:SCR_011844) Copy
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