Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hapmix Resource Report Resource Website 50+ mentions |
Hapmix (RRID:SCR_004203) | HAPMIX | software application, software resource, source code | Software application that uses genotyping data from SNP arrays for accurately inferring chromosomal segments of distinct continental ancestry in admixed populations, using dense genetic data. (entry from Genetic Analysis Software) | gene, genetic, genomic, admixed, population, genotype, single nucleotide polymorphism, ancestry, chromosomal segment, snp array |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: Harvard Medical School; Massachusetts; USA |
NHGRI U01-HG004168; NHLBI R01-HL087699 |
PMID:19543370 | Restricted | nlx_22768, OMICS_02082 | http://www.hsph.harvard.edu/faculty/alkes-price/software/, http://www.stats.ox.ac.uk/~myers/software.html, https://reich.hms.harvard.edu/software | http://genetics.med.harvard.edu/reich/Reich_Lab/Software.html | SCR_004203 | 2026-09-19 12:56:42 | 52 | ||||
|
Hungarian Neurological-Psychiatric Biobank Resource Report Resource Website |
Hungarian Neurological-Psychiatric Biobank (RRID:SCR_003715) | NEPSYBANK | biomaterial supply resource, material resource, tissue bank | The Hungarian Society of Clinical Neurgenetics established a nationwide collaboration for prospective collection of human biological materials and databases from patient with neurological and psychiatric diseases. The basic triangle of the NEPSYBANK is the sample, the information and the study management. The present participants of the NEPSYBANK are the Department of Neurology and Psychiatry of the four Medical Universities (in Budapest, Debrecen, Pecs, Szeged) and the National Institute of Psychiatry and Neurology in Budapest. The NEPSYBANK is a disease based biobank collecting both phenotypical and environmental data and biological materials such as DNA/RNA, whole blood, plasma, cerebral spinal fluid, muscle / nerve / skin biopsy, brain, and fibroblast. The target of the diseases is presently (Phase I): stroke syndromes, dementias, movement disorders, motoneuron diseases, epilepsy, multiple sclerosis, schizophrenia, alcohol addiction. In the near future (Phase II.) it is planned to enlarge the scale with headaches, disorders of the peripheral nerves, disorders of neuromuscular transmission, disorders of skeletal muscle, depression, anxiety. DNA/RNA is usually extracted from whole blood, but occasionally different tissues such as muscle, brain etc. can be used as well. The extracting procedures differ among the institutes, but in all cases the concentration and the quality of the DNA/RNA must be registered in the database. Participating institutional biobanks have committed themselves to follow common quality standards, which provide access to samples after prioritization on scientific grounds only. In every case the following data are registered. 1. General data: main bank categories, age, sex, ethnicity, body height, body weight, economic stats, education, type of place of living, marital status, birth complications, alcohol, drugs, smoking. 2. Sample properties (sample ID, type of sample, date of extraction, concentration, and level of purity). General patient data as blood pressure, heart rate, internal medical status, ECG, additional diseases. Disease specific question e.g. in schizophrenia the diagnosis after DSMIV and ICD 10, detailed diagnostic questions after both classification, detailed psychiatric and neurological status, laboratory findings, rating scales, data of neuroimaging, genetic tests, applied medication (with generic name, dose, duration), adverse drug effects and other treatments. The Biobank Information Management System (BIMS) is responsible for linkage of databases containing information on the individual sample donors. If you want to have samples from the NEPSYBANK an application must be submitted containing the following information: short research plan including aims and study design, ethic application with a positive decision, specific demands regarding the right of disposition, agreements with grant organizations which regulate immaterial property, information about financing (academic grants, support from industry). All participants have the right to withdraw their samples through a simple order. | neurology, psychiatry, genomic, gene, genetic, disease, phenotype, clinical data, environment, dna, rna, whole blood, plasma, cerebral spinal fluid, muscle, biopsy, nerve, skin, brain, fibroblast, tissue, blood, frozen, liquid nitrogen, neurological disease, psychiatric disease, stroke, dementia, movement disorder, motor neuron disease, epilepsy, multiple sclerosis, schizophrenia, alcohol, addiction, alcohol addiction, headache, peripheral nerve disorder, neuromuscular transmission disorder, skeletal muscle disorder, depressive disorder, anxiety | is listed by: One Mind Biospecimen Bank Listing | Neurological disease, Psychiatric disease, Stroke, Dementia, Movement disorder, Motor Neuron Disease, Epilepsy, Multiple Sclerosis, Schizophrenia, Alcohol addiction, Headache, Peripheral nerve disorder, Neuromuscular transmission disorder, Skeletal muscle disorder, Depressive Disorder, Anxiety | PMID:17448454 | Public: if you want to have samples from the NEPSYBANK an application must be submitted. | nlx_13478 | SCR_003715 | Hungarian Neurological - Psychiatric Biobank, Hungarian Neurological - Psychiatric Biobank - NEPSYBANK | 2026-09-19 12:56:41 | 0 | |||||
|
Wiring the Brain Resource Report Resource Website |
Wiring the Brain (RRID:SCR_005528) | Wiring the Brain | blog, data or information resource, narrative resource | This blog highlights and comments on current research and hypotheses relating to how the brain wires itself up during development, how the end result can vary in different people and what happens when it goes wrong. It includes discussions of the genetic and neurodevelopmental bases of traits such as intelligence and personality characteristics, as well as of conditions such as schizophrenia, autism, dyslexia, epilepsy, synaesthesia and others. | research, brain, development, genetic, wiring, neurodevelopment, trait, intelligence, personality, schizophrenia, autism, dyslexia, epilepsy, synaesthesia | Schizophrenia, Autism, Dyslexia, Epilepsy, Synaesthesia, Etc. | nlx_144622 | SCR_005528 | 2026-09-19 12:56:51 | 0 | |||||||||
|
Stroke Patient Recovery Research Database (SPReD) Resource Report Resource Website |
Stroke Patient Recovery Research Database (SPReD) (RRID:SCR_005508) | SPReD | data or information resource, database, image | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 28,2025. The Stroke Patient Recovery Research Database (SPReD) initiative creates the infrastructure needed for the collection of a wide range of data related to stroke risk factors and to stroke recovery. It also promotes the analysis and management of large brain and vessel images. A major goal is to create a comprehensive electronic database Stroke Patient Recovery Research Database or SPReD and populate it with patient data, including demographic, biomarker, genetic and proteomic data and imaging data. SPReD will enable us to combine descriptions of our stroke patients from multiple projects that are geographically distributed. We will do this in a uniform fashion in order to enhance our ability to document rates of recovery; to study the effects of vascular risk factors and inflammatory biomarkers; and to use these data to improve their physical and cognitive recovery through innovative intervention programs. This comprehensive database will provide an integrated repository of data with which our researchers will investigate and test original ideas, ultimately leading to knowledge that can be applied clinically to benefit stroke survivors. | stroke, demographic, biomarker, genetic, proteomic, imaging, clinical, brain, vessel, risk factor, recovery | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144609 | SCR_005508 | Stroke Patient Recovery Research Database | 2026-09-19 12:56:51 | 0 | ||||||||
|
NKI-RS Enhanced Sample Resource Report Resource Website 50+ mentions |
NKI-RS Enhanced Sample (RRID:SCR_010461) | Enhanced NKI-RS | data or information resource, data set | Dataset of 1000 characterized community-ascertained participants using state-of-the-art multiband imaging-based resting state fMRI (R-fMRI) and diffusion tensor imaging (DTI), genetics, and a deep phenotyping protocol from a large cross-sectional sample of brain development, maturation and aging (ages 6 - 85 yrs). The Center for Magnetic Resonance Research (CMRR), University of Minnesota, provided the NKI-RS effort with the latest version of the Multiband EPI sequence (Xu et al. 2012) and associated image reconstruction algorithms, enabling the acquisition of state-of-the-art imaging datasets for this large-scale imaging effort. The enhanced NKI-RS expands upon the phenotypic protocol of the original NKI-RS and captures a broad range of behavioral and cognitive phenomenology relevant to psychiatric health and illness. The validity and value of assessments were evaluated by consulting leaders in the field of psychiatric phenotyping. | demographic, multiband imaging, resting state fmri, diffusion tensor imaging, breath hold scan, eye movement calibration scan, visual stimulation scan, brain development, maturation, young human, late adult human, child, adolescent, adult human, image collection, pediatric, geriatric, behavior, cognitive, phentoyping, neuroimaging, dicom, nifti, multiband echo planar imaging, multiband resting state fmri, multiband diffusion tensor imaging, lifespan, physiological assessment, psychological assessment, genetic |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: NKI/Rockland Sample is related to: NKI-RS Multiband Imaging Test-Retest Pilot Dataset is related to: Mind Research Network - COINS is related to: NIMH Repository and Genomics Resources has parent organization: Nathan S. Kline Institute for Psychiatric Research; New York; USA |
Aging | New York State Office of Mental Health and Research Foundation for Mental Hygiene ; Child Mind Institute 1FDN2012-1; NIMH R01MH094639-01; NIMH R01MH081218; NIMH R01MH083246; NIMH R21MH084126 |
Public, Data Usage Agreement | nlx_157649 | SCR_010461 | Enhanced Nathan Kline Institute - Rockland Sample | 2026-09-19 12:58:56 | 97 | |||||
|
UPR Sabana Seca Field Station Caribbean Primate Research Center Resource Report Resource Website |
UPR Sabana Seca Field Station Caribbean Primate Research Center (RRID:SCR_010134) | CPRC SSF, SSF CPRC | access service resource, core facility, service resource | Core facility that provides the following services: Necropsy. The Sabana Seca Field Station (SSFS) is the administrative headquarters for the Caribbean Primate Research Center, or CPRC. This area contains offices, a clinic, and laboratories for reproductive biology and bone densitometry, necropsy and maintenance buildings. It houses rhesus monkeys from the CS colony or from the CS genetic line. | autopsy, rhesus, monkey, primate, genetic, necropsy, bone, reproduction, colony |
is listed by: Eagle I has parent organization: University of Puerto Rico; Puerto Rico; USA |
NIH Office of the Director U42 OD021458 | nlx_156612 | SCR_010134 | University of Puerto Rico Caribbean Primate Research Center, Sabana Seca CPRC, CPRC Sabana Seca Field Station | 2026-09-19 12:58:53 | 0 | |||||||
|
MUGA Resource Report Resource Website 100+ mentions |
MUGA (RRID:SCR_014072) | data or information resource, data set | MUGA genotypes for 458 samples from the developing CC lines described in the February 2012 issue of Genetics. Genotypes for 168 reference strains that include biological and technical replicates for the the 8 CC founder strains and their F1 crosses are also provided. Genotype calls are those reported by Illumina. All results are provided as comma separated files with one row per marker. Each marker is identified by a probe name and its genomic position in NCBI Build 37. | genetic, genotype, reference strain, cc line |
is affiliated with: Mutant Mouse Resource and Research Center has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
PMID:22345608 | SCR_014072 | 2026-09-19 12:59:14 | 267 | ||||||||||
|
Vermont University Genetics Network Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Vermont University Genetics Network Bioinformatics Core Facility (RRID:SCR_017686) | access service resource, core facility, service resource | Core provides expertise in biostatistics, microarray data analysis, proteome informatics, next generation sequencing data analysis, functional analysis, database development and information technology, including data storage infrastructure and high performance computing. Working closely with VGN Proteomics Facility, offers investigators experimental design consultations, comprehensive data analysis, data management and publishing, and manuscript and grant support. Core personnel also engage in teaching and training activities for data analysis and compute resources necessary for VGN network investigators. Our goal is to provide network researchers with bioinformatics expertise. | Vermont, genetic, network, bioinformatic, core, data, analysis, microarray, proteome, next, generation, sequencing, functional, database, core | Open | SCR_017707, ABRF_8 | SCR_017686 | Vermont Genetics Network Bioinformatics Core | 2026-09-19 12:59:28 | 1 | |||||||||
|
Steve and Cindy Rasmussen Institute for Genomic Medicine Clinical Laboratory Core Facility at Nationwide Children�s Hospital Resource Report Resource Website 1+ mentions |
Steve and Cindy Rasmussen Institute for Genomic Medicine Clinical Laboratory Core Facility at Nationwide Children�s Hospital (RRID:SCR_017840) | IGM | access service resource, core facility, service resource | Core performs and analyzes integrated clinical genomic, molecular, microarray, FISH, and cytogenetic analyses to diagnose broad range of inherited diseases and cancer. Serves as centralized clinical testing laboratory for Children Oncology Group leukemia, Wilms tumor, medulloblastoma, and rhabdomyosarcoma studies. Emphasizes collaborative interactions between clinicians, physician-scientists, and basic science investigators to quickly transition cutting edge research results into cutting edge diagnostics, using technology platforms. Services include Whole Exome Sequencing (WES),cytogenetic chromosome analysis,Fluorescence in situ Hybridization,Chromosomal microarray analysis,Molecular Genetic Testing - Inherited Diseases,Molecular Genetic Testing - Cancer. | Clinical, genomic, molecular, microarray, FISH, cytogenetic, inherited, disease, cancer, testing, children, oncology, leukemia, medulloblastoma, rhadomyosarcoma, diagnosis, whole, exome, sequencing, chromosomal, microarray, analysis, molecular, genetic, service, core, ABRF | is listed by: ABRF CoreMarketplace | Restricted | ABRF_631 | SCR_017840 | Institute for Genomic Medicine Clinical Laboratory | 2026-09-19 12:59:32 | 8 | |||||||
|
Albert Einstein College of Medicine Molecular Cytogenetics Core Facility Resource Report Resource Website |
Albert Einstein College of Medicine Molecular Cytogenetics Core Facility (RRID:SCR_017815) | MC | access service resource, core facility, service resource | Core provides tools for preparation of human and murine samples suitable for molecular genetic and cytogenetic analysis of entire genome. These tools include establishment of EBV transformed cell lines; isolation of DNA and mRNA from variety of tissue culture samples as well as primary biopsies; preparation of metaphase chromosomes suitable for fluorescence in situ hybridization (FISH) and Spectral Karyotyping (SKY) or whole chromosome paints for human and mouse genome. Core personnel is trained to hybridize commercial probes and to designed locus specific probes for regions of interest to investigators. All probes are custom designed and in house generated. | Molecular, cytogenetic, preparation, human, murine, sample, genetic, analysis, genome, DNA, mRNA, isolation, metaphase, chromosome, fluorescence, in situ, hybridization, spectra, kayotyping, commercial, design, locus, specific, probe, service, core, ABRF | is listed by: ABRF CoreMarketplace | Open | ABRF_580 | SCR_017815 | Molecular Cytogenetics Core Albert Einstein College of Medicine | 2026-09-19 12:59:31 | 0 | |||||||
|
Northwestern University High Throughput Analysis Laboratory Core Facility Resource Report Resource Website 1+ mentions |
Northwestern University High Throughput Analysis Laboratory Core Facility (RRID:SCR_017879) | NU-HTA | access service resource, core facility, service resource | Core provides expertise and resources for large scale biology. Helps to set up, run, gather data and perform analysis in drug discovery research, biochemistry, cell and organismal biology, functional genomic screening, and synthetic genetic. Works with proteins, nucleic acids, small model organisms, and microbial strains. Provides tissue culture,produces and uses lentivirus particles, screens compound libraries, does experiments for investigators,generates preliminary data to figure out if idea is workable, discusses project development. Services include Macromolecular binding, biochemical, and cell-based assays,High content screening with widefield or confocal optics,Nanoliter liquid handling up to 1536-well density,Whole-plate kinetic assays (ion currents, GPCR signaling),Compound library screening,CRISPR/Cas9 screening (multiplexed libraries),Analysis of large data sets,Fluorescence Thermal Shift assay (measures protein melting),Complex liquid handling work flows. | Collect, perform, analysis, drug, discovery, biochemistry, cell, organisational, biology, functional, genomic, screening, synthetitc, genetic, data, assay, library, CRISPR, Cas9, kinetic, fluorescence, shift, protein, melting, core, service |
is listed by: ABRF CoreMarketplace has parent organization: Northwestern University; Illinois; USA |
Open | SCR_017771, ABRF_724 | https://coremarketplace.org/?FacilityID=724&citation=1 | SCR_017879 | Northwestern Highthroughput Analysis Laboratory | 2026-09-19 12:59:33 | 3 | ||||||
|
coloc Resource Report Resource Website 50+ mentions |
coloc (RRID:SCR_026041) | software resource, software toolkit, source code | Software package to perform genetic colocalisation analysis of two potentially related phenotypes, to ask whether they share common genetic causal variant(s) in a given region.Colocalisation Tests of Two Genetic Traits. | Colocalisation tests, two genetic traits, genetic colocalisation analysis, genetic, colocalisation, two potentially related phenotypes, share common genetic causal variant, | Free, Available for download, Freely available, | https://CRAN.R-project.org/package=coloc | SCR_026041 | , coloc v5.2.3 | 2026-09-19 01:00:40 | 85 | |||||||||
|
Columbia University Zuckerman Institute Molecular Tools Core Facility Resource Report Resource Website 1+ mentions |
Columbia University Zuckerman Institute Molecular Tools Core Facility (RRID:SCR_026201) | access service resource, core facility, service resource | Full service viral vector production core that provides investigators access to vector technology for preclinical studies and other basic research applications. Staff will provide expert consultation services for advanced study design, safe use of viral vector technologies and viral construction services for multiple viral vector types. | Virology, antibodies, genetic, access tool, viral vector production, viral construction services, multiple viral vector types, | Open | SCR_026201 | The Zuckerman Institute Molecular Tools Core, , Antibodies and Genetic Access Tools, Zuckerman Institute: Molecular Tools - Virology | 2026-09-19 01:00:44 | 2 | ||||||||||
|
Cell Model Passports Resource Report Resource Website 10+ mentions |
Cell Model Passports (RRID:SCR_027682) | catalog, data or information resource, database | Hub for clinical, genetic and functional datasets of preclinical cancer models.Provides details of cell model relationships, patient and clinical information, as well as access to associated genetic and functional datasets. Passports database contains curated details and standardized annotation for cell models, including cancer organoid cultures. Users can navigate database via tissue, cancer-type, genetic feature and data availability to select model. REST-API provides programmatic data access and exploration. | clinical, genetic, functional, datasets, preclinical cancer models, | has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom | Wellcome Sanger Institute ; Wellcome Trust |
PMID:30260411 | Free, Freely available | SCR_027682 | 2026-09-19 01:01:15 | 15 | ||||||||
|
PacGenomics Resource Report Resource Website |
PacGenomics (RRID:SCR_027700) | commercial organization, service resource | Company provides medical laboratory services, specializing in genetic and genomic testing. | genetic, genomic, testing services, | SCR_027700 | 2026-09-19 01:01:16 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
