Tools   Select Another Resource Report Type

https://github.com/anaphaze/ot-tools

Software tools for analysis of cellular cryo-ET data.

Proper citation: ot-tools (RRID:SCR_017191) Copy   

•   Source: SciCrunch Registry

http://www.igc.gulbenkian.pt/facilities/bioinformatics

IGC Core in Oeiras, Portugal, promotes use of computational methods in biological research, through training and development of resources and materials, supports biological data analysis using computational methods, conducts research and development in bioinformatics, in particular in data flows, data warehousing and data analyses.

Proper citation: Gulbenkian Institute of Science Bioinformatics and Computational Unit Core Facility (RRID:SCR_017190) Copy   

•   Source: SciCrunch Registry

https://www.ed.ac.uk/igmm/facilities/bioinformatics-analysis-core

Core provides advice, training, provision of computational tools and collaborative expertise to all IGMM researchers.

Proper citation: University of Edinburgh College of Medicine and Veterinary Medicine MRC Institute of Genetics and Molecular Medicine Bioinformatics Analysis Core Facility (RRID:SCR_017194) Copy   

•   Source: SciCrunch Registry

https://www.a-star.edu.sg/gis/Our-Science/Technology-Platforms/Scientific-and-Research-Computing

Core provides research computing resources including bioinformatics, application development, data management and IT infrastructure to support next generation sequencing technologies, human genotyping, high throughput screening and computational biology researchers.

Proper citation: Genome Institute of Singapore Scientific and Research Computing Core Facility (RRID:SCR_017193) Copy   

•   Source: SciCrunch Registry

https://www.trophoblast.cam.ac.uk/Resources/BioInformatics

Core provides assistance with experimental design, RNA sequencing, whole genome and targeted sequencing, methylation sequencing, protein alignment, microscopy image analysis, and training.

Proper citation: University of Cambridge Centre for Trophoblast Research Bioinformatics Core Facility (RRID:SCR_017192) Copy   

•   Source: SciCrunch Registry

https://www.keyence.co.jp/products/microscope/fluorescence-microscope/bz-8100/models/bz-h1a/

Software tool as analysis application BZ-H1A by Keyence, Japan for fluorescence microscope BZ-8100 series.

Proper citation: BZ Analyzer software (RRID:SCR_017205) Copy   

•   Source: SciCrunch Registry

http://mayoresearch.mayo.edu/mayo/research/biostat/index.cfm

Core assists in genomics, proteomics and metabolomics data acquisition, management, analyses and interpretation to Mayo investigators. Participates in Basic science research, Clinical trials, Population health, and Translational science to execute analytical workflows and manage large omics data sets. Provides support to Mayo Clinic Center for Individualized Medicine and Mayo Clinic Cancer Center. Has its academic home in Department of Health Sciences Research within Division of Biomedical Statistics and Informatics.

Proper citation: Mayo Clinic Rochehster Bioinformatics Core Facility (RRID:SCR_017161) Copy   

•   Source: SciCrunch Registry

https://www.ie-freiburg.mpg.de/bioinformaticsfac

Core provides assistance in primary analysis of sequencing data and other large scale biocomputing. For our internal users we host extensive web services, workflows and customized tools that help with data management, visualizations, standardized analyses and data sharing.

Proper citation: Max Planck Institiute of Immunobiology and Epigenetics Bioinformatics Core Facility (RRID:SCR_017160) Copy   

•   Source: SciCrunch Registry

https://www.beckman.it/flow-cytometry/research-flow-cytometers/cytoflex/software

Software program that controls instrument operation, data collection and analysis. Software for CytoFLEX Platform by Beckman Coulter.

Proper citation: CytExpert Software (RRID:SCR_017217) Copy   

•   Source: SciCrunch Registry

https://github.com/EpistasisLab/pennai

Open source software tool to leverage supervised machine learning techniques to analyze data. Can assist with tasks such as choosing appropriate models for data. Data science assistant for generating results from large and complex data problems.

Proper citation: PennAI (RRID:SCR_017215) Copy   

•   Source: SciCrunch Registry

https://www.medsci.ox.ac.uk/research/labtalk/labtalk

Core provides genomics training, as well as assistance in next generation sequencing analyses.

Proper citation: University of Oxford Medical Sciences Division Computational Genomics: Analysis and Training Core Facility (RRID:SCR_017173) Copy   

•   Source: SciCrunch Registry

https://ircm.qc.ca/en/technological-services/bioinformatics

Core to support scientists within and outside IRCM in analysis of biological and clinical data, in particular high throughput genomic data. Operating on collaborative basis and paid services. Provides assistance with Data analysis for RNA-Seq, ChIP-Seq, RIP-Seq, DNA methylation, DNA-Seq, targeted sequencing of rRNAs, microarrays, customized training courses.

Proper citation: Montreal Clinical Research Bioinformatics Core Facility (RRID:SCR_017176) Copy   

•   Source: SciCrunch Registry

https://biocore.crg.eu/wiki/Main_Page

Provides services of consultation and data analysis, with focus on Next Generation Sequencing and other high throughput experiments, software and database development, and training in basic and advanced bioinformatics techniques. Services provided for fee to support collaborative grant funded investigations.

Proper citation: Centre for Genome Regulation Bioinformatics Core Facility (RRID:SCR_017145) Copy   

•   Source: SciCrunch Registry

https://github.com/aldenleung/OMTools

Software package for optical mapping data processing, analysis and visualization. Used to handle and explore large scale optical mapping profiles.

Proper citation: OMTools (RRID:SCR_017143) Copy   

•   Source: SciCrunch Registry

http://cleversysinc.com/CleverSysInc/?csi_products=topscan-suite

Software suite as top view based behavior analysis system by CleverSys Inc. Uses animal body parts to provide behavior analysis results. Used in experiments with animal tracking task.

Proper citation: TopScan (RRID:SCR_017141) Copy   

•   Source: SciCrunch Registry

http://www.bioisis.net

Software JAVA based application for basic analysis of Small Angle X-ray Scattering datasets.

Proper citation: SCÅTTER (RRID:SCR_017271) Copy   

•   Source: SciCrunch Registry

https://proxl-ms.org/

Web application and database designed for sharing, visualizing, and analyzing protein cross-linking mass spectrometry data with emphasis on structural analysis and quality control. Includes public and private data sharing capabilities, project based interface designed to ensure security and facilitate collaboration among multiple researchers. Used for private collaboration and public data dissemination.

Proper citation: Protein Cross-Linking Database (RRID:SCR_021027) Copy   

•   Source: SciCrunch Registry

http://dichroweb.cryst.bbk.ac.uk/html/home.shtml

Web server for analysis of protein circular dichroism spectra. Provides access to circular dichroism secondary structure calculation algorithms and reference databases. Used in analysis of protein secondary structures.

Proper citation: DichroWeb (RRID:SCR_018125) Copy   

•   Source: SciCrunch Registry

https://www.ebi.ac.uk/covid-19

EMBL-EBI portal to enable researchers to upload, access and analyse COVID-19 related reference data and specialist datasets submitted to EMBL-EBI and other major centers for biomedical data. Used to facilitate data sharing and analysis to accelerate coronavirus research. The aim of the COVID-19 Data Portal is to facilitate data sharing and analysis, and to accelerate coronavirus research. EMBL-EBI and partners have set up the COVID-19 Data Portal, which will bring together relevant datasets submitted to EMBL-EBI and other major centres for biomedical data. The aim is to facilitate data sharing and analysis, and to accelerate coronavirus research. The COVID-19 Data Portal will enable researchers to upload, access and analyse COVID-19 related reference data and specialist datasets. The COVID-19 Data Portal will be the primary entry point into the functions of a wider project, the European COVID-19 Data Platform.

Proper citation: EMBL-EBI COVID-19 Portal (RRID:SCR_018337) Copy   

•   Source: SciCrunch Registry

https://viewer.cytosplore.org/

Web based interactive visual analysis system for exploration of single cell data published in Allen Cell Types Database and for number of single cell data resources of Brain Initiative Single Cell Network. Allows interactive exploration of hierarchies of cell types, visualization of transcriptome wide gene expression in combination with metadata of individual cells, performing differential analyses and statistics between manual selections of cells, or between pre-defined clusters throughout cellular hierarchy and more.

Proper citation: Cytosplore Viewer (RRID:SCR_018330) Copy   

•   Source: SciCrunch Registry