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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ETDT Resource Report Resource Website 1+ mentions |
ETDT (RRID:SCR_007576) | ETDT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application for TDT test on markers with more than two alleles using a logistic regression analysis. (entry from Genetic Analysis Software). | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154303 | SCR_007576 | SciCrunch Registry | extended transmission/disequilibrium test | 2026-10-17 01:35:46 | 2 | |||||||
|
TRANSMIT Resource Report Resource Website 50+ mentions |
TRANSMIT (RRID:SCR_007571) | TRANSMIT | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Software application that tests for association between genetic marker and disease by examining the transmission of markers from parents to affected offspring. The main features which differ from other similar programs are: (1) It can deal with transmission of multi-locus haplotypes, even if phase is unknown, and (2) Parental genotypes may be unknown. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154100 | SCR_007571 | SciCrunch Registry | 2026-10-17 01:33:55 | 51 | ||||||||
|
LINKAGE - CEPH Resource Report Resource Website |
LINKAGE - CEPH (RRID:SCR_007048) | LINKAGE - CEPH | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, ms-dos, os2, unix, vms | is listed by: Genetic Analysis Software | nlx_154429 | SCR_007048 | SciCrunch Registry | three-generation pedigrees, FASTLINK | 2026-10-17 01:33:54 | 0 | ||||||||
|
MULTIMAP Resource Report Resource Website 10+ mentions |
MULTIMAP (RRID:SCR_007168) | MULTIMAP | software application, software resource | Software program for automated construction of genetic maps (entry from Genetic Analysis Software) | gene, genetic, genomic, lisp, unix, (sun/compaq-alpha/hp..), bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:multimap, nlx_154013 | https://bio.tools/multimap | http://compgen.rutgers.edu/Multimap/ | SCR_007168 | SciCrunch Registry | 2026-10-17 01:35:46 | 31 | |||||||
|
MAPMAKER/SIBS Resource Report Resource Website 1+ mentions |
MAPMAKER/SIBS (RRID:SCR_008012) | MAPMAKER/SIBS | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Data analysis software for complete multipoint analysis. | gene, genetic, genomic, c, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154465 | https://dsgweb.wustl.edu/aldi/software/manuals/mapmaker_sibs/mapmaker_sibs.pdf | ftp://ftp-genome.wi.mit.edu/distribution/software/sibs | SCR_008012 | SciCrunch Registry | GENEHUNTER | 2026-10-17 01:33:55 | 6 | |||||
|
MORGAN Resource Report Resource Website 100+ mentions |
MORGAN (RRID:SCR_006906) | MORGAN | software application, software resource | Software programs for segregation and linkage analysis, using a variety of Markov chain Monte Carlo (MCMC) methods. Includes MCMC methods for multilocus gene identity by descent (including homozygosity mapping) and Monte Carlo Lod scores. Also, other programs for EM analysis of quantitative traits. | gene, genetic, genomic, c, unix, compaq-alpha, solaris, linux, linkage disequilibrium, gl_lods, ibd_haplo, identity by descent, segregation, linkage analysis, markov chain monte carlo |
is listed by: OMICtools is listed by: Genetic Analysis Software has parent organization: University of Washington; Seattle; USA |
NIGMS GM-46255 | PMID:22298700 | nlx_154201, OMICS_00205 | SCR_006906 | SciCrunch Registry | MOnte caRlo Genetic ANalysis PANGAEA | 2026-10-17 01:34:33 | 319 | ||||||
|
FAMOZ Resource Report Resource Website 1+ mentions |
FAMOZ (RRID:SCR_007477) | FAMOZ | software application, software resource | Software application that uses likelihood calculation and simulation to perform parentage studies with codominant, dominant, cytoplasmic markers or combinations of the different types (entry from Genetic Analysis Software) | gene, genetic, genomic, c, tcl/tk, unix, solaris, linux, ms-windows | is listed by: Genetic Analysis Software | nlx_154086 | SCR_007477 | SciCrunch Registry | FAther/MOther | 2026-10-17 01:34:33 | 6 | ||||||||
|
CLUMP Resource Report Resource Website 100+ mentions |
CLUMP (RRID:SCR_007476) | CLUMP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application that uses Monte Carlo method for assessing significance of a case-control association study with multi-allelic marker. (entry from Genetic Analysis Software). | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154028 | SCR_007476 | SciCrunch Registry | 2026-10-17 01:33:58 | 104 | ||||||||
|
TREESCAN Resource Report Resource Website 10+ mentions |
TREESCAN (RRID:SCR_007108) | TREESCAN | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Software application that is intended to provide p-values for the hypothesis of association between evolutionary clades and continuous traits, using haplotype trees. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, ms-windows, ms-dos, macos, (x) | is listed by: Genetic Analysis Software | PMID:15681571 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154011 | SCR_007108 | SciCrunch Registry | 2026-10-17 01:33:58 | 12 | |||||||
|
Whap Resource Report Resource Website 1+ mentions |
Whap (RRID:SCR_007103) | Whap | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 24, 2015. This package is no longer supported. The majority of the functionality for conditional haplotype tests in population-based samples has been implemented in PLINK, with a better interface and more robust, faster computation: please use that from now on. Software tool to perform haplotype-based association analysis, for quantitative and qualitative traits, in population and family samples, using single nucleotide polymorphism or multiallelic marker data. What whap can do: * Analyze quantitative and qualitative traits * Handle unrelated individuals and/or parent-offspring trio data * Perform a regression-based haplotype association test for SNP data * Perform a secondary test based on pairwise haplotype similarity * Phase genotype data using a standard E-M approach, and handle ambiguity in E-M inferred haplotypes * Include covariates and moderator variables * Flexibly constrain effects across haplotypes to tested nested models * Perform a robust within-family test when parental genotypes are present * Analyze multiallelic markers (new) * Use dominant or recessive (new) genetic models (new) | gene, genetic, genomic, c, c++, unix, ms-windows, ms-dos, linux |
is listed by: Genetic Analysis Software is related to: PLINK |
MRC G9901258; NEI EY-12562 |
PMID:17118959 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-31900 | SCR_007103 | SciCrunch Registry | 2026-10-17 01:35:46 | 9 | ||||||
|
GC/GCF Resource Report Resource Website 1+ mentions |
GC/GCF (RRID:SCR_009075) | software application, software resource | Software application where GC implements the genomic control models. GCF implements the basic Genomic Control approach, but adjusts the p-values for uncertainty in the estimated effect of substructure. This approach is preferable if a large number of tests will be evaluated because it provides a more accurrate assessment of the significance level for small p-values. (entry from Genetic Analysis Software) | gene, genetic, genomic, r, linux | is listed by: Genetic Analysis Software | SCR_000846, nlx_154072, nlx_154584 | SCR_009075 | SciCrunch Registry | R/GCF, R/GC, Genomic Control | 2026-10-17 01:33:28 | 1 | |||||||||
|
COVIBD Resource Report Resource Website |
COVIBD (RRID:SCR_009155) | software application, software resource | Software application that refines linkage analysis of affected sibpairs by considering attributes or environmental exposures thought to affect disease liability. This refinement utilizes a mixture model in which a disease mutation segregates in only a fraction of the sibships, with the rest of the sibships unlinked. Covariate information is used to predict membership within the two groups corresponding to the linked and unlinked sibships. The pre-clustering model uses covariate information to first form two probabilistic clusters and then tests for excess IBD-sharing in the clusters. The Cov-IBD model determines probabilistic group membership by joint consideration of covariate and IBD values. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154207, SCR_009109, nlx_154275 | SCR_009155 | SciCrunch Registry | R/COVIBD | 2026-10-17 01:34:52 | 0 | |||||||||
|
MGA-MAPF2 Resource Report Resource Website |
MGA-MAPF2 (RRID:SCR_008108) | MGA-MAPF2 | software application, software resource | Software application that map QTLs in F-2 intercross in model organisms (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran, ms-dos, ms-windows, (95/98/nt) | is listed by: Genetic Analysis Software | nlx_154478 | SCR_008108 | SciCrunch Registry | 2026-10-17 01:35:47 | 0 | |||||||||
|
R/SPECTRAL-GEM Resource Report Resource Website 10+ mentions |
R/SPECTRAL-GEM (RRID:SCR_007414) | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154600, nlx_154655, SCR_009408 | SCR_007414 | SciCrunch Registry | SPECTRAL graph approach for GEnetic Matching, SPECTRAL-GEM | 2026-10-17 01:35:46 | 10 | |||||||||
|
ILR Resource Report Resource Website |
ILR (RRID:SCR_007895) | ILR | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application for calculation of the restricted likelihood-ratio affected sib-pair test for linkage allowing for imprinting (entry from Genetic Analysis Software) | gene, genetic, genomic, sas macro | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_007895 | SciCrunch Registry | Imprinting Likelihood Ratio | 2026-10-17 01:33:59 | 0 | ||||||||
|
SIBMED Resource Report Resource Website 1+ mentions |
SIBMED (RRID:SCR_007495) | SIBMED | software application, software resource | Software application that identifies likely genotyping errors and mutations for a sib pair in the context of multipoint mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran 77, ms-windows, unix, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:sibmed, nlx_154043 | https://bio.tools/sibmed | SCR_007495 | SciCrunch Registry | SIBling Mutation and Error Detection | 2026-10-17 01:35:46 | 1 | |||||||
|
MAP MANAGER QT Resource Report Resource Website |
MAP MANAGER QT (RRID:SCR_008101) | MAP MANAGER QT | software application, software resource | A graphic, interactive program to map quantitative trait loci by regression methods; MAP MANAGER CLASSIC enhanced by quantitative trait mapping. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, macos | is listed by: Genetic Analysis Software | nlx_154466 | SCR_008101 | SciCrunch Registry | 2026-10-17 01:33:55 | 0 | |||||||||
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S Resource Report Resource Website |
S (RRID:SCR_007646) | S | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented September 15, 2017. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154605 | SCR_007646 | SciCrunch Registry | 2026-10-17 01:34:34 | 0 | ||||||||
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LDA Resource Report Resource Website |
LDA (RRID:SCR_007527) | LDA | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. A Java program for analyzing the pairwise linkage disequilibrium. | gene, genetic, genomic, java, ms-windows, linux, macos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154088 | SCR_007527 | SciCrunch Registry | Linkage Disequilibrium Analyzer | 2026-10-17 01:33:59 | 0 | |||||||
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RVTESTS Resource Report Resource Website 50+ mentions |
RVTESTS (RRID:SCR_007639) | RVTESTS | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, c++ | is listed by: Genetic Analysis Software | nlx_154603 | SCR_007639 | SciCrunch Registry | Rare Variants TESTS | 2026-10-17 01:33:59 | 90 |
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