Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
http://purl.bioontology.org/ontology/CPRO
A uniform core set of data elements (whose formal semantics are captured in OWL) for use in a Computer-Based Patient Record (CPR)
Proper citation: Computer-Based Patient Record Ontology (RRID:SCR_007540) Copy
http://purl.bioontology.org/ontology/SOY
Growth, trait and development ontology for soybean
Proper citation: Soy Ontology (RRID:SCR_007847) Copy
http://purl.bioontology.org/ontology/HCPCS
Ontology for the healthcare common procedure coding system.
Proper citation: Healthcare Common Procedure Coding System (RRID:SCR_007598) Copy
http://purl.bioontology.org/ontology/DIKB
An evidence taxonomy for pharmacologic studies that, when combined with a set of inclusion criteria, enable drug experts to specify what their confidence in a drug mechanism assertion would be if it were supported by a specific set of evidence.
Proper citation: Drug Interaction Knowledge Base Ontology (RRID:SCR_007591) Copy
http://purl.bioontology.org/ontology/CHD
An ontology that describes the Congenital Heart Defects data.
Proper citation: Congenital Heart Defects Ontology (RRID:SCR_007584) Copy
http://purl.bioontology.org/ontology/SSE
Memorial Sloan-Kettering Cancer Center''s ontology of surgical secondary events (adverse events).
Proper citation: Surgical Secondary Events (RRID:SCR_007894) Copy
An ontology of bioinformatics operations (tool, application, or workflow functions), types of data including identifiers, topics (application domains), and data formats. The applications of EDAM are within organizing tools and data, finding suitable tools in catalogues, and integrating them into complex applications or workflows. Semantic annotations with EDAM are applicable to diverse entities such as for example Web services, databases, programmatic libraries, standalone tools and toolkits, interactive applications, data schemas, data sets, or publications within bioinformatics. Annotation with EDAM may also contribute to data provenance, and EDAM terms and synonyms can be used in text mining. EDAM - and in particular the EDAM Data sub-ontology - serves also as a markup vocabulary for bioinformatics data on the Semantic Web.
Proper citation: EDAM Ontology (RRID:SCR_006620) Copy
http://purl.bioontology.org/ontology/BDO
Ontology that provides a comprehensive and formal representation of the different domain concepts involved in documenting the full complexity of the skeletal dysplasia domain. It captures and combines the genetic features that discriminate the bone dysplasias with the multitude of phenotypic characteristics manifested by patients and required to be taken into account in order to support the diagnosis process.
Proper citation: Bone Dysplasia Ontology (RRID:SCR_006588) Copy
http://www.nlm.nih.gov/research/umls/rxnorm/
Ontology that provides a normalized naming system for generic and branded drugs and a tool for supporting semantic interoperation between drug terminologies and pharmacy knowledge base systems. It contains the names of prescription and many over-the-counter drugs available in the United States and links its names to many of the drug vocabularies commonly used in pharmacy management and drug interaction software. It can mediate messages between systems not using the same software and vocabulary. * RxNorm Download Files - contain data consistent with the 2013AB UMLS Metathesaurus Release Files. * RxNorm API - web service for accessing the current RxNorm data set. * RxNorm Browser (RxNav) - a browser for several drug information sources, including RxNorm, RxTerms and National Drug File - Reference Terminology (NDF-RT) . * Current Prescribable Content - subset of currently prescribable drugs found in RxNorm. * RxTerms Drug Interface Terminology - a drug interface terminology derived from RxNorm for prescription writing or medication history recording
Proper citation: RxNorm (RRID:SCR_006645) Copy
https://wiki.nci.nih.gov/display/LexEVS/LexGrid
LexGrid (Lexical Grid) provides support for a distributed network of lexical resources such as terminologies and ontologies via standards-based tools, storage formats, and access/update mechanisms. The Lexical Grid Vision is for a distributed network of terminological resources. It is the foundation of the National Center for Biomedical Ontology BioPortal interface and web-services, and can parse OBO format, as well as other formats such as OWL. Currently, there are many terminologies and ontologies in existence. Just about every terminology has its own format, its own set of tools, and its own update mechanisms. The only thing that most of these pieces have in common with each other is their incompatibility. This makes it very hard to use these resources to their full potential. We have designed the Lexical Grid as a way to bridge terminologies and ontologies with a common set of tools, formats and update mechanisms. The Lexical Grid is: * accessible through a set of common APIs * joined through shared indices * online accessible * downloadable * loosely coupled * locally extendable * globally revised * available in web-space on web-time * cross-linked The realization of this vision requires three interlocking components, which are: * Standards - access methods and formats need to be published and openly available * Tools - standards based tools must be readily available * Content - commonly used terminologies have to be available for access and download Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible
Proper citation: LexGrid (RRID:SCR_006627) Copy
http://purl.bioontology.org/ontology/BSAO
Ontology describing the anatomy and the development of Botryllus schlosseri.
Proper citation: Botryllus schlosseri anatomy and development ontology (RRID:SCR_006602) Copy
http://purl.bioontology.org/ontology/MCBCC
Ontology covering a comprehensive list of cell lines derived from breast tissue, both normal and pathological. The ontology in built in OWL with cross relation to classes- genetic variation, pathological condition, genes, chemicals and drugs. The relations built enable semantic query across different classes
Proper citation: Breast Tissue Cell Lines Ontology (RRID:SCR_006686) Copy
http://purl.bioontology.org/ontology/RPO
A controlled vocabulary of ontology class structures and entities of observed phenotypic terms for primary immunodeficiency diseases (PIDs) that facilitate global sharing and free exchange of PID data with users'' communities
Proper citation: Resource of Asian Primary Immunodeficiency Diseases Phenotype Ontology (RRID:SCR_006776) Copy
http://purl.bioontology.org/ontology/WB-LS
A structured controlled vocabulary of the development of Caenorhabditis elegans.
Proper citation: C. elegans Development Vocabulary (RRID:SCR_006811) Copy
http://purl.bioontology.org/ontology/WB-BT
A structured controlled vocabulary of the anatomy of Caenorhabditis elegans.
Proper citation: C. elegans Gross Anatomy Vocabulary (RRID:SCR_006835) Copy
http://purl.bioontology.org/ontology/IDOBRU
A biomedical ontology in the domain of zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular baterium.
Proper citation: Brucellosis Ontology (RRID:SCR_006795) Copy
http://purl.bioontology.org/ontology/WB-PHENOTYPE
A structured controlled vocabulary of Caenorhabditis elegans phenotypes.
Proper citation: C. elegans Phenotype Vocabulary (RRID:SCR_006924) Copy
http://purl.bioontology.org/ontology/CCON
Ontology of Cerrado wood plant dynamics to represent the set of concepts about the dynamics, that is, changes over time of the wood vegetation structure, of Cerrado. Ccon describes the main parameters used to measure the changes, such as mortality rate and recruitment rate.
Proper citation: Cerrado concepts and plant community dynamics (RRID:SCR_007174) Copy
http://purl.bioontology.org/ontology/EP
Ontology that contains terms describing single-channel electrophysiological experiments and data obtained using voltage-clamp, current clamp and fluorescence imaging techniques applied at the cell level and multi-channel fluorescence imaging techniques applied at the cell, tissue and whole heart levels.
Proper citation: Cardiac Electrophysiology Ontology (RRID:SCR_007065) Copy
http://purl.bioontology.org/ontology/GRO-CPGA
A structured controlled vocabulary for the anatomy of Gramineae. Please note that this ontology has now been superseded by the Plant Ontology, http://bioportal.bioontology.org/ontologies/1587.
Proper citation: Cereal Plant Gross Anatomy Ontology (RRID:SCR_007061) Copy
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
You can save any searches you perform for quick access to later from here.
We recognized your search term and included synonyms and inferred terms along side your term to help get the data you are looking for.
If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the sources that were queried against in your search that you can investigate further.
Here are the categories present within NIF that you can filter your data on
Here are the subcategories present within this category that you can filter your data on
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
