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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Benaroya Research Institute Cell and Tissue Analysis Group Core Facility Resource Report Resource Website 1+ mentions |
Benaroya Research Institute Cell and Tissue Analysis Group Core Facility (RRID:SCR_026327) | CATA | access service resource, core facility, service resource | Core offers flow cytometry, imaging, and histology resources.Provides expertise in the fields of imaging, histology, and flow cytometry, physical space and instruments, critical support through the whole process, from hands-on training to experiment design and data analysis. | ABRF, flow cytometry, imaging, histology resources, |
is listed by: ABRF CoreMarketplace has parent organization: Benaroya Research Institute |
Open | ABRF_3011 | https://coremarketplace.org/?FacilityID=3011&citation=1 | SCR_026327 | Benaroya Research Institute Cell and Tissue Analysis Group, , Cell and Tissue Analysis Group | 2026-09-05 06:35:19 | 4 | ||||||
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University Health Network Krembil Discovery Tower Flow Cytometry Core Facility Resource Report Resource Website |
University Health Network Krembil Discovery Tower Flow Cytometry Core Facility (RRID:SCR_027529) | access service resource, core facility, service resource | Core offers cell sorting and flow cytometry services. Provided instruments include BD FACS Canto II, Beckman Cytoflex LX, BD FACS ARIA III, AutoMacs Cell Separator. | ABRF, cell sorting, flow cytometry |
is listed by: ABRF CoreMarketplace has parent organization: University Health Network |
Open | ABRF_5435 | https://coremarketplace.org/RRID:SCR_027529/?citation=1 | SCR_027529 | Krembil Discovery Tower (KDT) Flow Cytometry Core Facility | 2026-09-05 06:35:50 | 0 | |||||||
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University Health Network Princess Margaret Cancer Centre Integrative Immune Analysis Core Facility Resource Report Resource Website |
University Health Network Princess Margaret Cancer Centre Integrative Immune Analysis Core Facility (RRID:SCR_028046) | access service resource, core facility, service resource | Core provides specialized, high-dimensional immune profiling for clinical and translational studies. It enables researchers to analyze immune responses using advanced flow cytometry, CyTOF, genomics, and cytokine analysis, helping to improve cancer treatments and patient outcomes. | ABRF, immune profiling for clinical and translational studies, flow cytometry, CyTOF, genomics, cytokine analysis, |
is listed by: ABRF CoreMarketplace has parent organization: University Health Network |
Open | ABRF_5795 | https://coremarketplace.org/RRID:SCR_028046/?citation=1 | SCR_028046 | , Princess Margaret Cancer Centre Centre for Integrative Immune Analysis | 2026-09-05 06:36:05 | 0 | |||||||
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Medical College of Wisconsin Children's Research Institute Flow Cytometry Core Facility Resource Report Resource Website |
Medical College of Wisconsin Children's Research Institute Flow Cytometry Core Facility (RRID:SCR_028480) | access service resource, core facility, service resource | Core provides access to analytical cytometers and cell sorters for trained users and operator-assisted cell sorting by appointment during business hours. Assists with protocol and assay development, including sample preparation, selection of antibodies and fluorochromes, proper staining and compensation controls, and selection of appropriate buffers. Offers assistance with data analysis using FlowJo, FCS Express, DIVA and SpectroFlo software is also available by appointment. | ABRF, analytical services, cytometers and cell sorters, flow cytometry, data analysis, |
is listed by: ABRF CoreMarketplace has parent organization: Medical College of Wisconsin; Wisconsin; USA |
Open | ABRF_5964 | https://https://coremarketplace.org/?FacilityID=5964&citation=1 | SCR_028480 | Children's Research Institute Flow Cytometry Core | 2026-09-05 06:36:13 | 0 | |||||||
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University of Mississippi Medical Center Pharmacology Clinical Research Core Facility Resource Report Resource Website |
University of Mississippi Medical Center Pharmacology Clinical Research Core Facility (RRID:SCR_028576) | access service resource, core facility, service resource | Facility promotes and facilitates faculty and student research in biomedical bench science. Provides supports for clinical research, expertise and resources to clinical and translational scientists and trainees. Offers services of clinical research coordinators and BSL2 facilities for the processing, storage or molecular experimentation of human biological samples. In addition, equipment and technical assistance for performing ELISAs, cell proliferation assays, autoantibody assays, nitric oxide (NO) measurements, reactive oxygen species (ROS) determination, proteomics, mitochondrial function, flow cytometry, Western immunoblotting, and cell cytokine secretion profiling are available. | ABRF, clinical and translational biomedical bench services, human biological sample, ELISAs, cell proliferation assays, autoantibody assays, nitric oxide (NO) measurements, reactive oxygen species (ROS) determination, proteomics, mitochondrial function, flow cytometry, Western immunoblotting, cell cytokine secretion profiling, |
is listed by: ABRF CoreMarketplace has parent organization: University of Mississippi; Mississippi; USA |
ABRF_5997 | https://coremarketplace.org/RRID:SCR_028576/?citation=1 | SCR_028576 | , UMMC Pharmacology Clinical Research Core, Pharmacology Clinical Research Core (PCRC) | 2026-09-05 06:36:15 | 0 | ||||||||
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University of Oklahoma Health Sciences Center Ocular Immunobiology Core Facility Resource Report Resource Website |
University of Oklahoma Health Sciences Center Ocular Immunobiology Core Facility (RRID:SCR_028864) | OIC | access service resource, core facility, service resource | Core provides instrumentation and expertise for single-cell analysis in models of ocular development, degeneration, infection, and inflammation. Instrumentation includes a Cytek Aurora full-spectrum flow cytometer, a Cytek Aurora CS cell sorter, and a Luminex 200 multiplex suspension array system, together with an Agilent wound scratch tool, an Agilent Lionheart XL plate imager, and a CellZScope for real-time barrier physiology. Services include assisted and independent instrument use, training, panel and experiment design, sample preparation, and data analysis, with particular expertise in high-autofluorescence ocular tissues. | ABRF, ocular services, flow cytometry, spectral cytometry, cell sorting, multiplex immunoassay, Luminex, Cytek Aurora, ocular immunology, |
is listed by: ABRF CoreMarketplace has parent organization: University of Oklahoma; Oklahoma; USA |
NEI P30EY021725 | https://coremarketplace.org/RRID:SCR_028864/?citation=1 | ABRF_6146 | SCR_028864 | , DMEI Ocular Immunobiology Core, OIC, OUHSC Ocular Immunobiology Core | 2026-09-05 06:36:21 | 0 | ||||||
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flowFP Resource Report Resource Website 1+ mentions |
flowFP (RRID:SCR_001537) | software resource | A Bioconductor software package for fingerprint generation of flow cytometry data, used to facilitate the application of machine learning and datamining tools for flow cytometry. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, clustering, visualization |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:19956416 | Free, Available for download, Freely available | OMICS_05599 | SCR_001537 | flowFP - Fingerprinting for Flow Cytometry | 2026-09-05 06:24:35 | 4 | |||||||
|
plateCore Resource Report Resource Website |
plateCore (RRID:SCR_001743) | data or information resource, database, software resource | Software that provides basic S4 data structures and routines for analyzing plate based flow cytometry data. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, infrastructure |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:19956418 | Free, Available for download, Freely available | OMICS_05641 | http://www.bioconductor.org/packages/release/bioc/html/plateCore.html | SCR_001743 | plateCore - Statistical tools and data structures for plate-based flow cytometry | 2026-09-05 06:24:38 | 0 | ||||||
|
flowClust Resource Report Resource Website 10+ mentions |
flowClust (RRID:SCR_001807) | software resource | A Bioconductor software package for automated gating of flow cytometry data that implements a robust model-based clustering approach based on multivariate t mixture models with the Box-Cox transformation. | software package, mac os x, unix/linux, windows, r, clustering, flow cytometry, visualization |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:19442304 | Artistic License, v2 | OMICS_05595 | SCR_001807 | flowClust - Clustering for Flow Cytometry | 2026-09-05 06:24:39 | 15 | |||||||
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COMPASS Resource Report Resource Website 1+ mentions |
COMPASS (RRID:SCR_001801) | software resource | Software for combinatorial polyfunctionality analysis of single cells. It is a statistical framework that enables unbiased analysis of antigen-specific T-cell subsets. It uses a Bayesian hierarchical framework to model all observed cell-subsets and select the most likely to be antigen-specific while regularizing the small cell counts that often arise in multi-parameter space. The model provides a posterior probability of specificity for each cell subset and each sample, which can be used to profile a subject's immune response to external stimuli such as infection or vaccination. | software package, mac os x, unix/linux, windows, r, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:26006008 | Free, Available for download, Freely available | OMICS_05640 | SCR_001801 | Combinatorial Polyfunctionality Analysis of Single Cells, COMPASS - Combinatorial Polyfunctionality Analysis of Single Cells, COMPASS: Combinatorial Polyfunctionality Analysis of Single Cells | 2026-09-05 06:24:39 | 2 | |||||||
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flowUtils Resource Report Resource Website 1+ mentions |
flowUtils (RRID:SCR_001879) | software resource | Software that provides utilities for flow cytometry data. | software package, mac os x, unix/linux, windows, r, cell based assay, flow cytometry, decision tree, infrastructure |
is listed by: OMICtools has parent organization: Bioconductor |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_05614 | SCR_001879 | flowUtils - Utilities for flow cytometry | 2026-09-05 06:24:41 | 7 | ||||||||
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flowTrans Resource Report Resource Website 1+ mentions |
flowTrans (RRID:SCR_002093) | software resource | Software for profile maximum likelihood estimation of parameters for flow cytometry data transformations. | software package, mac os x, unix/linux, windows, r, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:21050468 | Free, Available for download, Freely available | OMICS_05612 | SCR_002093 | flowTrans - Parameter Optimization for Flow Cytometry Data Transformation | 2026-09-05 06:24:44 | 5 | |||||||
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flowMap Resource Report Resource Website 1+ mentions |
flowMap (RRID:SCR_002269) | software resource | Software package that quantifies the similarity of cell populations across multiple flow cytometry samples using a nonparametric multivariate statistical test. The algorithm allows the users to specify a reference sample for comparison or to construct a reference sample from the available data. The output of the algorithm is a set of text files where the cell population labels are replaced by a metaset of population labels, generated from the matching process. | software package, mac os x, unix/linux, windows, r, flow cytometry, multiple comparison |
is listed by: OMICtools has parent organization: Bioconductor |
GNU General Public License, v2 or greater | OMICS_05600 | SCR_002269 | flowMap - A probabilistic algorithm for matching and comparing multiple flow cytometry samples | 2026-09-05 06:24:46 | 5 | ||||||||
|
flowMatch Resource Report Resource Website 1+ mentions |
flowMatch (RRID:SCR_002283) | software resource | Software for matching cell populations and building meta-clusters and templates from a collection of flow cytometry (FC) samples. | software package, mac os x, unix/linux, windows, r, clustering, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:22536861 | Free, Available for download, Freely available | OMICS_05602 | SCR_002283 | flowMatch - Matching and meta-clustering in flow cytometry | 2026-09-05 06:24:46 | 1 | |||||||
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flowMeans Resource Report Resource Website 1+ mentions |
flowMeans (RRID:SCR_002275) | software resource | Software that identifies cell populations in Flow Cytometry data using non-parametric clustering and segmented-regression-based change point detection. | software package, mac os x, unix/linux, windows, r, cell biology, clustering, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor is a plug in for: FlowJo |
PMID:21182178 | Artistic License, v2 | OMICS_05603 | SCR_002275 | flowMeans: Non-parametric Flow Cytometry Data Gating, flowMeans - Non-parametric Flow Cytometry Data Gating | 2026-09-05 06:24:46 | 7 | |||||||
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flowMerge Resource Report Resource Website 1+ mentions |
flowMerge (RRID:SCR_002224) | software resource | Software for merging of mixture components for model-based automated gating of flow cytometry data using the flowClust framework. | software package, mac os x, unix/linux, windows, r, clustering, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:20049161 | Free, Available for download, Freely available | OMICS_05605 | SCR_002224 | flowMerge - Cluster Merging for Flow Cytometry Data | 2026-09-05 06:24:45 | 2 | |||||||
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flowPhyto Resource Report Resource Website |
flowPhyto (RRID:SCR_002183) | software resource | An R package that performs aggregate statistics on virtually unlimited collections of raw flow cytometry files and provides a memory efficient, parallelized solution for analyzing high-throughput flow cytometric data. | software package, mac os x, unix/linux, windows, r, classification, clustering, data import, flow cytometry, quality control, visualization |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:21208987 | Free, Available for download, Freely available | OMICS_05606 | http://www.bioconductor.org/packages/release/bioc/html/flowPhyto.html | SCR_002183 | flowPhyto - Methods for Continuous Flow Cytometry | 2026-09-05 06:24:45 | 0 | ||||||
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PRECISESADS Resource Report Resource Website 10+ mentions |
PRECISESADS (RRID:SCR_003882) | PRECISESADS | organization | A project that will study 2,500 people with various systemic autoimmune diseases (SADs), gathering data on the molecular causes of their disease as well as their clinical symptoms, enabling them to pave the way for a new classification of these diseases. The goal is to use OMICs and bioinformatics to identify new classifications for diseases known to share common pathophysiological mechanisms. Results will be shared to deliver a new molecular taxonomy of systemic autoimmune diseases. In order to achieve this, PRECISEADS is informing on a regular basis on the project implementation and results, and involving stakeholders from Europe in its activities in order to broaden the project impact and increase opportunities for cooperation. | biomarker, diagnostic, basic research, clinical, genomics, transcriptomics, epigenomics, flow cytometry, cellular separations, pre-clinical model, proteomics, metabolomics, serology, tissue, taxonomy, imaging, biosample, sample collection, biobanking, blood, urine |
is listed by: Consortia-pedia is related to: Centre for Genomics and Oncological Research is related to: Progress and Health Foundation; Seville; Spain is related to: Spanish National Research Council; Madrid; Spain is related to: August Pi i Sunyer Biomedical Research Institute; Barcelona; Spain is related to: German Rheumatism Research Centre Berlin; Berlin; Germany is related to: Bellvitge Biomedical Research Institute is related to: Karolinska Institute; Stockholm; Sweden is related to: Hannover Medical School; Lower Saxony; Germany is related to: Medical University of Vienna; Vienna; Austria is related to: Cyprus Institute of Neurology and Genetics; Nicosia; Cyprus is related to: University of Granada; Granada; Spain is related to: University of Milan; Milan; Italy is related to: Catholic University of Louvain; Louvain-la-Neuve; Belgium is related to: University of Western Brittany; Brest; France is related to: University of Geneva; Geneva; Switzerland is related to: University of Szeged; Szeged; Hungary is related to: Althia is related to: Quartz Bio is related to: Catholic University of Leuven; Flemish Brabant; Belgium has parent organization: Progress and Health Foundation; Seville; Spain has parent organization: Centre for Genomics and Oncological Research |
Innovative Medicines Initiative ; EFPIA |
nlx_158209 | SCR_003882 | PRECISESADS - Molecular reclassification to find clinically useful biomarkers for systemic autoimmune diseases | 2026-09-05 06:25:10 | 19 | |||||||
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flowFlowJo Resource Report Resource Website 10+ mentions |
flowFlowJo (RRID:SCR_000410) | software resource | A Bioconductor package that can import gates defined by the commercial package FlowJo and work with them in a manner consistent with the other flow packages in Bioconductor. FlowJo is a commercial GUI based software package from TreeStar Inc. for the visualization and analysis of flow cytometry data. One of the FlowJo standard export file types is the FlowJo Workspace. This is an XML document that describes files and manipulations that have been performed in the FlowJo GUI environment. This package can take apart the FlowJo workspace and deliver the data into R in the flowCore paradigm. | software package, mac os x, unix/linux, windows, r, flow cytometry |
is listed by: OMICtools has parent organization: Bioconductor |
PMID:19956421 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_05598 | SCR_000410 | flowFlowJo - Tools for extracting information from a FlowJo workspace and working with the data in the flowCore paradigm | 2026-09-05 06:24:19 | 21 | |||||||
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BD Biosciences: FACSCalibur Flow Cytometry System Resource Report Resource Website 100+ mentions |
BD Biosciences: FACSCalibur Flow Cytometry System (RRID:SCR_000401) | BD FACSCalibur system | instrument resource | Automated benchtop flow cytometry system. It allows measuring four fluorochrome-conjugates, forward and side scatter., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | flow cytometry, hardware, instrument, equipment | has parent organization: BD Biosciences | THIS RESOURCE IS NO LONGER IN SERVICE | https://drive.google.com/file/d/1v6yeGl7IxHS0_Ezn35dZ9qzu27jIBh52/view?usp=drivesdk | SciRes_000153 | https://www.bdbiosciences.com/content/dam/bdb/marketing-documents/BD_FACSCalibur_instructions.pdf | SCR_000401 | FACSCalibur flow cytometer | 2026-09-05 06:24:18 | 411 |
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