Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
SNPTEST Resource Report Resource Website 100+ mentions |
SNPTEST (RRID:SCR_009406) | software application, software resource | Software program for the analysis of single SNP association in genome-wide studies. The tests implemented can cater for binary (case-control) and quantitative phenotypes, can condition upon an arbitrary set of covariates and properly account for the uncertainty in genotypes. The program is designed to work seamlessly with the output of both the genotype calling program CHIAMO, the genotype imputation program IMPUTE and the program GTOOL. This program was used in the analysis of the 7 genome-wide association studies carried out by the Wellcome Trust Case-Control Consortium (WTCCC). (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154651, biotools:snptest | https://bio.tools/snptest | http://www.stats.ox.ac.uk/~marchini/software/gwas/snptest.html | SCR_009406 | 2026-09-12 01:02:46 | 401 | ||||||||
|
SNPLINK Resource Report Resource Website 1+ mentions |
SNPLINK (RRID:SCR_009403) | software application, software resource | Software application for multipoint linkage analysis of densely distributed SNP data incorporating automated linkage disequilibrium removal. SNPLINK requires these other programs installed on the system: MERLIN (used for nonparametric analysis), ALLEGRO (used for parametric analysis), R and PERL, all are freely available. (entry from Genetic Analysis Software) | gene, genetic, genomic, perl, unix | is listed by: Genetic Analysis Software | nlx_154646 | SCR_009403 | 2026-09-12 01:02:46 | 4 | ||||||||||
|
SNPP Resource Report Resource Website 50+ mentions |
SNPP (RRID:SCR_009404) | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. A dynamic general database management system to manage high-throughput SNP genotyping data. It provides several functions, including data importing with comparison, Mendelian inheritance check within pedigrees, data compiling and exporting. Furthermore, SNPP may generate files for repeat genotyping and transform them into files that can be executed by a liquid handling system. | gene, genetic, genomic, java, windows, linux, solaris, macos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154648 | SCR_009404 | Single Nucleotide Polymorphism Processor | 2026-09-12 01:02:46 | 60 | ||||||||
|
R/LUCA Resource Report Resource Website |
R/LUCA (RRID:SCR_009369) | R/LUCA | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154591 | http://stat-db.stat.sfu.ca:8080/statgen/research/luca/ | SCR_009369 | Likelihood Under Covariate Assumptions | 2026-09-12 01:02:45 | 0 | |||||||
|
SNAP 3 Resource Report Resource Website 1+ mentions |
SNAP 3 (RRID:SCR_009400) | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Software program can be used to generate SNP haplotype sequence data of unrelated individuals and nuclear families with a fixed or random number of children. | gene, genetic, genomic, c, linux, unix, solaris, ms-windows | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154639 | http://capella.uni-kiel.de/snap/snap.htm, | SCR_009400 | Simulation of sNp haplotype data And Phenotypic traits | 2026-09-12 01:02:46 | 1 | |||||||
|
R/GAP Resource Report Resource Website 1+ mentions |
R/GAP (RRID:SCR_009364) | R/GAP | software application, software resource | An integrated software package for genetic data analysis of both population and family data. Currently it contains functions for sample size calculations of both population-based and family-based designs, classic twin ACE/ADE/AE/CE models, probability of familial disease aggregation, kinship calculation, some statistics in linkage analysis, and association analysis involving one or more genetic markers including haplotype analysis with or without environmental covariates (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154583 | SCR_009364 | R/Genetic Analysis Package | 2026-09-12 01:02:45 | 1 | ||||||||
|
R/HAPASSOC Resource Report Resource Website |
R/HAPASSOC (RRID:SCR_009365) | software application, software resource | Software application using a likelihood approach to inference of haplotype and nongenetic effects and their interactions in generalized linear models of disease penetrance, when haplotype phase is unknown for some subjects. Parameter estimates are obtained by use of an expectation-maximization (EM) algorithm and standard errors are calculated using Louis'' formula. (entry from Genetic Analysis Software) | gene, genetic, genomic, r | is listed by: Genetic Analysis Software | nlx_154587, SCR_009219, nlx_154374 | http://stat-db.stat.sfu.ca:8080/statgen/research/hapassoc | SCR_009365 | HAPASSOC | 2026-09-12 01:02:45 | 0 | ||||||||
|
RHMAP Resource Report Resource Website 1+ mentions |
RHMAP (RRID:SCR_009360) | RHMAP | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77 | is listed by: Genetic Analysis Software | nlx_154575 | SCR_009360 | Radiation Hybrid Map | 2026-09-12 01:02:45 | 3 | ||||||||
|
PDT Resource Report Resource Website 1+ mentions |
PDT (RRID:SCR_009319) | PDT | software application, software resource | Software analysis program to evaluate evidence of linkage disequilibrium (LD) in general pedigree data. All family data may be used without nullifying the validity of the association test, even when there is more than one affected in a family. The PDT program performs both allele-specific and genotype-specific LD analysis of individual markers. Version 5.1 adds the ability to perform genotype-specific analysis over marker sets. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, solaris | is listed by: Genetic Analysis Software | nlx_154513 | SCR_009319 | pedigree disequilibrium test | 2026-09-12 01:02:44 | 2 | ||||||||
|
PDA Resource Report Resource Website |
PDA (RRID:SCR_009317) | PDA | software application, software resource | Software tool for analyses of pooled DNA data (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154511 | SCR_009317 | Pooled DNA Analyzer | 2026-09-12 01:02:44 | 0 | ||||||||
|
PDPSYS Resource Report Resource Website |
PDPSYS (RRID:SCR_009318) | PDPSYS | software application, software resource | Software application that is a Windows-based system designed for pedigree data management, providing a graphical interface for pedigree construction and output. (entry from Genetic Analysis Software) | gene, genetic, genomic, visual basic, ms-access, ms-windows, (95) | is listed by: Genetic Analysis Software | nlx_154512 | SCR_009318 | Pedigree Data Processing SYStem | 2026-09-12 01:02:44 | 0 | ||||||||
|
PAWE Resource Report Resource Website 10+ mentions |
PAWE (RRID:SCR_009316) | PAWE | software application, software resource | Software application for power and sample size calculations for genetic case-control association studies allowing for errors (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154510 | SCR_009316 | Power for Association With Error | 2026-09-12 01:02:44 | 11 | ||||||||
|
NUCULAR Resource Report Resource Website |
NUCULAR (RRID:SCR_009311) | NUCULAR | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software program that splits extended pedigrees into nuclear families, with the option of recoding all sibs as half-sibs with distinct mothers of fathers. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154501 | SCR_009311 | 2026-09-12 01:02:44 | 0 | ||||||||
|
Suite of Nucleotide Analysis Programs Resource Report Resource Website 1000+ mentions |
Suite of Nucleotide Analysis Programs (RRID:SCR_009399) | SNAP | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone., documented September 29, 2016. A workbench tool to make existing population genetic software more accessible and to facilitate the integration of new tools for analyzing patterns of DNA sequence variation, within a phylogenetic context. Collectively, SNAP tools can serve as a bridge between theoretical and applied population genetic analysis. The exploration of DNA sequence variation for making inferences on evolutionary processes in populations requires the coordinated implementation of a Suite of Nucleotide Analysis Programs (SNAP), each bound by specific assumptions and limitations. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154637 | http://www.cals.ncsu.edu/plantpath/people/faculty/carbone/snap.html | SCR_009399 | 2026-09-12 01:02:46 | 4485 | |||||||
|
SLINK Resource Report Resource Website 10+ mentions |
SLINK (RRID:SCR_009397) | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, ms-dos |
is listed by: Genetic Analysis Software is related to: FASTSLINK is related to: SUP |
nlx_154635 | SCR_009397 | 2026-09-12 01:02:45 | 22 | ||||||||||
|
SKAT Resource Report Resource Website 100+ mentions |
SKAT (RRID:SCR_009396) | software application, software resource | Software application that is a SNP-set (e.g., a gene or a region) level test for association between a set of rare (or common) variants and dichotomous or quantitative phenotypes. SKAT aggregates individual score test statistics of SNPs in a SNP set and efficiently computes SNP-set level p-values, e.g. a gene or a region level p-value, while adjusting for covariates, such as principal components to account for population stratification. SKAT also allows for power/sample size calculations for designing for sequence association studies. (entry from Genetic Analysis Software) | gene, genetic, genomic, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
nlx_154634, biotools:skat | https://bio.tools/skat | SCR_009396 | SNP-set (Sequence) Kernel Association Test | 2026-09-12 01:02:45 | 287 | ||||||||
|
SIMWALK Resource Report Resource Website 10+ mentions |
SIMWALK (RRID:SCR_009393) | software application, software resource | Software programs for generating optimal haplotype configurations on general pedigrees using a likelihood-based approach to correctly take intermarker recombination fractions into account. simcross ignores untyped parts of the pedigree, and it uses simulated annealing. simwalk combines simulated annealing with random walk method. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77, unix, sunos, solaris | is listed by: Genetic Analysis Software | nlx_154632 | SCR_009393 | SIMWALK/SIMCROSS | 2026-09-12 01:02:45 | 10 | |||||||||
|
START Resource Report Resource Website 500+ mentions |
START (RRID:SCR_009394) | software application, software resource | Software application that finds starting points for MCMC analysis performed on large, complex pedigrees and polymorphic markers. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, solaris, linux | is listed by: Genetic Analysis Software | nlx_154633 | SCR_009394 | 2026-09-12 01:02:45 | 708 | ||||||||||
|
SIMULA Resource Report Resource Website 1+ mentions |
SIMULA (RRID:SCR_009390) | SIMULA | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented September 29, 2016. Simulation program that generates data sets of families for use in linkage and association studies. SIMLA_3.2 is a major upgrade to versions 2.3 and 3.0 that provides the ability to simulate two disease loci and two environmental covariates. Gene-gene and gene-environment interactions may also be simulated which jointly determine the disease risk of all pedigree members. | gene, genetic, genomic, java, r, unix, solaris, linux, ms-windows |
is listed by: Genetic Analysis Software is related to: DE-Sim |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154629 | http://www.chg.duke.edu/research/simla30.html | SCR_009390 | 2026-09-12 01:02:45 | 1 | |||||||
|
MUTAGENESYS Resource Report Resource Website |
MUTAGENESYS (RRID:SCR_009309) | MUTAGENESYS | software application, software resource | Software application that uses genome-wide genotype data to estimate disease susceptibility. Our system integrates three data sources: HapMap, whole-genome marker correlation data, and OMIM database. It accepts SNP data of individuals as query input and delivers disease susceptibility hypotheses even if the original set of typed SNPs is incomplete. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154499 | SCR_009309 | 2026-09-12 01:02:44 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
