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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ot-tools Resource Report Resource Website 1+ mentions |
ot-tools (RRID:SCR_017191) | data analysis software, data processing software, software application, software resource | Software tools for analysis of cellular cryo-ET data. | analysis, cellular, cryo-ET, data | Free, Available for download, Freely available | SCR_017191 | 2026-09-03 04:54:29 | 5 | |||||||||||
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Gulbenkian Institute of Science Bioinformatics and Computational Unit Core Facility Resource Report Resource Website |
Gulbenkian Institute of Science Bioinformatics and Computational Unit Core Facility (RRID:SCR_017190) | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource, training service resource | IGC Core in Oeiras, Portugal, promotes use of computational methods in biological research, through training and development of resources and materials, supports biological data analysis using computational methods, conducts research and development in bioinformatics, in particular in data flows, data warehousing and data analyses. | bioinformatics, consulting, data, analysis, management, repository | Open | SCR_017190 | Bioinformatics and Computational Unit, IGC, core facility, Instituto Gulbenkian de Ciencia, Gulbenkian Institute of Science | 2026-09-03 04:54:20 | 0 | ||||||||||
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University of Edinburgh College of Medicine and Veterinary Medicine MRC Institute of Genetics and Molecular Medicine Bioinformatics Analysis Core Facility Resource Report Resource Website |
University of Edinburgh College of Medicine and Veterinary Medicine MRC Institute of Genetics and Molecular Medicine Bioinformatics Analysis Core Facility (RRID:SCR_017194) | MRC Institute of Genetics and Molecular Medicine BAC | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource, software resource, training service resource | Core provides advice, training, provision of computational tools and collaborative expertise to all IGMM researchers. | bioinformatics, data, analysis, sequencing | has parent organization: University of Edinburgh; Scotland; United Kingdom | Restricted | SCR_017194 | The University of Edinburgh, Bioinformatics Analysis, College of Medicine and Veterinary Medicine, College of Medicine & Veterinary Medicine, Core Facility, Institute of Genetics and Molecular Medicine, IGMM, MRC | 2026-09-03 04:54:20 | 0 | ||||||||
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Genome Institute of Singapore Scientific and Research Computing Core Facility Resource Report Resource Website |
Genome Institute of Singapore Scientific and Research Computing Core Facility (RRID:SCR_017193) | GIS Scientific and Research Computing | access service resource, analysis service resource, core facility, data analysis service, production service resource, service resource, software resource | Core provides research computing resources including bioinformatics, application development, data management and IT infrastructure to support next generation sequencing technologies, human genotyping, high throughput screening and computational biology researchers. | bioinformatics, genomic, data, management, next, generation, sequencing, genotyping, analysis | Open | SCR_017193 | Core Facility, GIS, Scientific & Research Computing, Scientific and Research Computing, Genome Institute of Singapore | 2026-09-03 04:54:17 | 0 | |||||||||
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University of Cambridge Centre for Trophoblast Research Bioinformatics Core Facility Resource Report Resource Website |
University of Cambridge Centre for Trophoblast Research Bioinformatics Core Facility (RRID:SCR_017192) | CTR Bioinformatics Core Facility | access service resource, analysis service resource, core facility, data analysis service, production service resource, service resource, training service resource | Core provides assistance with experimental design, RNA sequencing, whole genome and targeted sequencing, methylation sequencing, protein alignment, microscopy image analysis, and training. | bioinformatics, sequencing, RNA, genome, methylation, protein, alignment, data, image, analysis | has parent organization: University of Cambridge; Cambridge; United Kingdom | Restricted | SCR_017192 | Center for Trophoblast Research, Centre for Trophoblast Research, Bioinformatics Core Facility, University of Cambridge | 2026-09-03 04:54:10 | 0 | ||||||||
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University of Malaga Andalusian Platform of Bioinformatics Core Facility Resource Report Resource Website 10+ mentions |
University of Malaga Andalusian Platform of Bioinformatics Core Facility (RRID:SCR_017169) | SCBI, scbi | access service resource, core facility, data or information resource, service resource | Provides assistance in computing, nanotechnology, and biological fields. Provides scientific support and resources to the UMA research groups, public institutions and private companies. | bioinformatics, computing, nanotechnology, biology, data | has parent organization: University of Malaga; Andalusia; Spain | Open | SCR_017169 | Universidad de Malaga, scbi, UMA, Plataforma Andaluza de Bioinformatica, University of Malaga, SCBI, Supercomputing and Bioinnovation Center | 2026-09-03 04:54:28 | 13 | ||||||||
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Mayo Clinic Rochehster Bioinformatics Core Facility Resource Report Resource Website 1+ mentions |
Mayo Clinic Rochehster Bioinformatics Core Facility (RRID:SCR_017161) | Mayo Clinic Bioinformatics Core | access service resource, analysis service resource, core facility, data analysis service, production service resource, service resource | Core assists in genomics, proteomics and metabolomics data acquisition, management, analyses and interpretation to Mayo investigators. Participates in Basic science research, Clinical trials, Population health, and Translational science to execute analytical workflows and manage large omics data sets. Provides support to Mayo Clinic Center for Individualized Medicine and Mayo Clinic Cancer Center. Has its academic home in Department of Health Sciences Research within Division of Biomedical Statistics and Informatics. | bioinformatics, data, acquisition, management, analysis, genomics, proteomics, metabolomics | has parent organization: Mayo Clinic | Restricted | SCR_017161 | Bioinformatics Core, Division of Biomedical Statistics and Informatics, Rochehster, Mayo Clinic, Core Facility | 2026-09-03 04:54:23 | 2 | ||||||||
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Max Planck Institiute of Immunobiology and Epigenetics Bioinformatics Core Facility Resource Report Resource Website |
Max Planck Institiute of Immunobiology and Epigenetics Bioinformatics Core Facility (RRID:SCR_017160) | access service resource, analysis service resource, core facility, data analysis service, production service resource, service resource, software resource | Core provides assistance in primary analysis of sequencing data and other large scale biocomputing. For our internal users we host extensive web services, workflows and customized tools that help with data management, visualizations, standardized analyses and data sharing. | bioinformatics, biocomputing, sequencing, data, omics, analysis, visualization, management | has parent organization: Max Planck Institiute of Immunobiology and Epigenetics; Freiburg; Germany | Restricted | SCR_017160 | , Bioinformatics Facility, Core Facility, Bioinformatics Core Facility, Epigenetics, Max Planck Institiute of Immunobiology | 2026-09-03 04:54:07 | 0 | |||||||||
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University of Michigan School of Medicine Center of Computational Medicine and Bioinformatics Core Facility Resource Report Resource Website |
University of Michigan School of Medicine Center of Computational Medicine and Bioinformatics Core Facility (RRID:SCR_017179) | UM School of Medicine Computational Medicine and Bioinformatics, CCMB, Center of Computational Medicine and Bioinformatics | access service resource, core facility, data or information resource, service resource | University interdisciplinary academic center for bioinformatics, biomedical data science, and translational precision health informatics. Core provides training programs. | Bioinformatics, biomedical, data, translational, informatics | Restricted | SCR_017179 | University of Michigan, CCMB, Computational Medicine and Bioinformatics, UM, School of Medicine | 2026-09-03 04:54:18 | 0 | |||||||||
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IBM® MarketScan® Research Databases Resource Report Resource Website 10+ mentions |
IBM® MarketScan® Research Databases (RRID:SCR_017212) | data or information resource, data set, database | Software suite of proprietary databases that contain one of longest running and largest collection of privately and publicly insured, de identified patient data in USA. Family of data sets that fully integrate many types of data for healthcare research. | Database, dataset, collection, patient, data, healthcare | Available for purchase | SCR_017212 | 2026-09-03 04:54:29 | 39 | |||||||||||
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CytExpert Software Resource Report Resource Website 500+ mentions |
CytExpert Software (RRID:SCR_017217) | data acquisition software, data analysis software, data processing software, software application, software resource | Software program that controls instrument operation, data collection and analysis. Software for CytoFLEX Platform by Beckman Coulter. | control, instrument, data, collection, analysis, CytoFLEX Platform, Beckman Coulter, flow, cytometry |
is listed by: OMICtools works with: Beckman Coulter: CytoFLEX LX Flow Cytometer |
OMICS_30185 | https://www.beckman.fr/flow-cytometry/instruments/cytoflex/software | SCR_017217 | 2026-09-03 04:54:22 | 900 | |||||||||
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PennAI Resource Report Resource Website |
PennAI (RRID:SCR_017215) | data analysis software, data management software, data processing software, data visualization software, software application, software resource | Open source software tool to leverage supervised machine learning techniques to analyze data. Can assist with tasks such as choosing appropriate models for data. Data science assistant for generating results from large and complex data problems. | Supervised, machine, learning, technique, data, mining, storing, analysis, visualizationn, artificial, intelligence | has parent organization: University of Pennsylvania; Philadelphia; USA | Free, Available for download, Freely available | http://pennai.org/, https://epistasislab.github.io/pennai/ | SCR_017215 | Accessible artificial intelligence from University of Pennsylvania | 2026-09-03 04:54:24 | 0 | ||||||||
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University of Oxford Medical Sciences Division Computational Genomics: Analysis and Training Core Facility Resource Report Resource Website |
University of Oxford Medical Sciences Division Computational Genomics: Analysis and Training Core Facility (RRID:SCR_017173) | CGAT | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource, training service resource | Core provides genomics training, as well as assistance in next generation sequencing analyses. | bioinformatics, genomics, next, generation, sequencing, data, analysis | has parent organization: University of Oxford; Oxford; United Kingdom | Restricted | SCR_017173 | Medical Sciences Division, Computational Genomics: Analysis and Training Core Facility, CGAT, University of Oxford, Computational Genomics Analysis and Training Core Facility | 2026-09-03 04:54:16 | 0 | ||||||||
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Montreal Clinical Research Bioinformatics Core Facility Resource Report Resource Website |
Montreal Clinical Research Bioinformatics Core Facility (RRID:SCR_017176) | IRCM BIF, BIF | access service resource, analysis service resource, core facility, data analysis service, data or information resource, production service resource, service resource, training service resource | Core to support scientists within and outside IRCM in analysis of biological and clinical data, in particular high throughput genomic data. Operating on collaborative basis and paid services. Provides assistance with Data analysis for RNA-Seq, ChIP-Seq, RIP-Seq, DNA methylation, DNA-Seq, targeted sequencing of rRNAs, microarrays, customized training courses. | bioinformatics, genomic, omics, data, analysis, RNA-Seq, CHIP-Seq, RIP-Seq, DNA, methylation, DNA-Seq, rRNA, microarray | Restricted | SCR_017176 | , Institute of Clinical Research of Montreal, IRCM, Bioinformatics Core Facility, BIF | 2026-09-03 04:54:23 | 0 | |||||||||
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FoXS Resource Report Resource Website 10+ mentions |
FoXS (RRID:SCR_017269) | analysis service resource, data access protocol, production service resource, service resource, software resource, web service | Web server for computing theoretical scattering profile of structure and fitting of experimental profile. Computes SAXS profile of given atomistic model and fits it to experimental profile. Used for structural modeling applications with small angle X-ray scattering data. | computing, theoretical, scattering, profile, structure, fitting, small, angle, X ray, data | has parent organization: University of California at San Francisco; California; USA | Lawrence Berkeley National Lab IDAT program ; NCRR U54 RR022220; NIGMS P41 GM109824; NIGMS R01 GM083960; NIGMS R01 GM105404; Rinat (Pfizer) Inc. ; Weizmann Institute Advancing Women in Science |
PMID:23972848 PMID:27151198 |
Free, Available for download, Freely available | SCR_017269 | Fast X-Ray Scattering | 2026-09-03 04:54:28 | 24 | |||||||
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Centre for Genome Regulation Bioinformatics Core Facility Resource Report Resource Website |
Centre for Genome Regulation Bioinformatics Core Facility (RRID:SCR_017145) | Biocore CRG | access service resource, core facility, service resource, software resource, training resource | Provides services of consultation and data analysis, with focus on Next Generation Sequencing and other high throughput experiments, software and database development, and training in basic and advanced bioinformatics techniques. Services provided for fee to support collaborative grant funded investigations. | bioinformatics, NGS, consultation, data, analysis, next, generation, sequencing | has parent organization: Centre for Genomic Regulation; Barcelona; Spain | Restricted | SCR_017145 | Bioinformatics Core, , Core Facility, Centre for Genomic Regulation, Biocore, CRG | 2026-09-03 04:54:28 | 0 | ||||||||
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Heuristic Identification of Biological Architectures for simulating Complex Hierarchical Interactions Resource Report Resource Website |
Heuristic Identification of Biological Architectures for simulating Complex Hierarchical Interactions (RRID:SCR_017140) | HIBACHI, hibachi | simulation software, software application, software resource | Software tool that creates data sets with particular characteristics. Method and open source software for simulating complex biological and biomedical data to aid in comparing and evaluating machine learning methods. | data, simulation, dataset, compare, machine, evaluate, learning, method | NIAID AI116794; NIDDK DK112217; NLM LM012601 |
PMID:29218887 | Free, Available for download, Freely available | SCR_017140 | Heuristic Identification of Biological Architectures for simulating Complex Hierarchical Interactions | 2026-09-03 04:54:14 | 0 | |||||||
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miRquant Resource Report Resource Website 1+ mentions |
miRquant (RRID:SCR_017261) | data analysis software, data analytics software, data processing software, software application, software resource | Software tool for accurate annotation and quantification of microRNAs and their isomiRs from small RNA-sequencing data. Provides information on quality of sequencing data, genome mapping statistics, abundance of other types of small RNAs such as tDRs and yDRs, prevalence of post transcriptional modifications. | annotation, quantification, miRNA, smRNA-seq, data, functionally, distinct, isoform, isomiR, quality, sequencing, genome, mapping, statistic, tDR, yDR | PMID:28187421 | Free, Available for download, Freely available | SCR_017261 | miRquant 2.0 | 2026-09-03 04:54:31 | 1 | |||||||||
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OMTools Resource Report Resource Website 1+ mentions |
OMTools (RRID:SCR_017143) | alignment software, data analysis software, data processing software, data visualization software, image analysis software, software application, software resource, software toolkit | Software package for optical mapping data processing, analysis and visualization. Used to handle and explore large scale optical mapping profiles. | optical, mapping, data, processing, analysis, visualization, large, scale, profile, phylogenesis | is listed by: SoftCite | Chinese University of Hong Kong ; Food and Health Bureau of the Hong Kong Special Administrative Region ; HKSAR Research Grants Council ; Lee Hysan Foundation ; Lo Kwee-Seong Biomedical Research Fund |
PMID:28505226 | Free, Available for download, Freely available | SCR_017143 | 2026-09-03 04:54:22 | 2 | ||||||||
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Massachusetts Institute of Technology Koch Institute Bioinformatics and Computing Core Facility Resource Report Resource Website |
Massachusetts Institute of Technology Koch Institute Bioinformatics and Computing Core Facility (RRID:SCR_017155) | core facility, access service resource, service resource | Core provides support, assistance and training in wide range of bioinformatics topics. Maintains high-performance computing resource offering many bioinformatics applications, substantial processing power and secure storage. Provides support for desktop computing and poster printing. Services include Data Analysis, Software Support (access to proprietary bioinformatics resources Ingenuity Pathway Analysis and GeneGO MetaCore, Training sessions covering various bioinformatics topics, Linux compute cluster, data storage. | Bioinformatics, support, training, data, analysis, storage, service, core, ABRF |
is listed by: ABRF CoreMarketplace is related to: USEDit has parent organization: Massachusetts Institute of Technology; Massachusetts; USA was submitted by: Resource Identification Portal |
NCI P30 CA14051 | Restricted | ABRF_769 | https://coremarketplace.org/?FacilityID=769 | SCR_017155 | Barbara K. Ostrom Bioinformatics Facility, The Barbara K. Ostrom (1978) Bioinformatics and Computing Facility | 2026-09-03 04:54:16 | 0 |
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