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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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SIBSIM Resource Report Resource Website |
SIBSIM (RRID:SCR_009113) | SIBSIM | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that simulates either genotype and/or quantitative phenotype data in family structures in a modern, easy to use and highly scalable way. It is based on XML, completely written in C++ and published under the GNU General Public License. | gene, genetic, genomic, c++, xml, unix | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154212 | SCR_009113 | 2026-09-05 06:32:44 | 0 | ||||||||
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IGG Resource Report Resource Website 1+ mentions |
IGG (RRID:SCR_009114) | IGG | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. | gene, genetic, genomic, java, web-based | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154214 | http://bioinfo.hku.hk:13080/iggweb/ | SCR_009114 | Integrate Genotypes for genome-wide Genetic studies | 2026-09-05 06:32:44 | 2 | ||||||
|
QTLNetwork Resource Report Resource Website 50+ mentions |
QTLNetwork (RRID:SCR_009078) | software application, software resource | Software package for mapping and visualizing the genetic architecture underlying complex traits for experimental populations derived from a cross between two inbred lines. (entry from Genetic Analysis Software). QTLNetwork-2.0 for mapping quantitative trait loci (QTL) with epistatic effects and QE interaction effects in DH, RI, BC, F2, IF2 and BxFy populations, and for graphical presentation of QTL mapping results. | gene, genetic, genomic | is listed by: Genetic Analysis Software | PMID:18202029 PMID:20593516 |
nlx_154076 | SCR_009078 | , QTLNetwork, QTL network 2, QTLNetwork 2.0 | 2026-09-05 06:32:43 | 50 | ||||||||
|
TREELD Resource Report Resource Website |
TREELD (RRID:SCR_009111) | TREELD | software application, software resource | Free software tool for mapping complex trait loci. TreeLD performs a multipoint LD-analysis by inferring the ancestry of a genomic region and analyzing this ancestry for signals of disease mutations. The generated likelihoods can be used to test for the presence of a disease locus and to fine-map its location, providing a point estimate and a credible region. Furthermore, the package provides a novel way of visualizing the association signal in a sample. TreeLD is designed for high-density SNP haplotypes and can be applied to case-control data, TDT trio data and quantitative trait data. (entry from Genetic Analysis Software) | gene, genetic, genomic, unix, solaris, linux, ms-windows, (95/98/nt/2000/xp) | is listed by: Genetic Analysis Software | Free | nlx_154210 | SCR_009111 | 2026-09-05 06:32:43 | 0 | ||||||||
|
MIXSCORE Resource Report Resource Website 1+ mentions |
MIXSCORE (RRID:SCR_009076) | MIXSCORE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application using a method for combining SNP association and admixture association statistics to increase power in GWAS in admixed populations. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154074 | SCR_009076 | 2026-09-05 06:32:43 | 6 | ||||||||
|
POWQ Resource Report Resource Website |
POWQ (RRID:SCR_009077) | POWQ | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 9, 2023. A user-friendly, graphical package for power evaluation and enhancement planning through variance component linkage analysis in a multipoint framework. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | PMID:16585065 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154075 | SCR_009077 | 2026-09-05 06:32:43 | 0 | |||||||
|
STRAT Resource Report Resource Website 10+ mentions |
STRAT (RRID:SCR_009110) | STRAT | software application, software resource | Software application that is a companion program to STRUCTURE that is a structured association method, for use in association mapping, enabling valid case-control studies even in the presence of population structure. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-dos, ms-windows, unix, solaris, linux |
is listed by: Genetic Analysis Software is related to: STRUCTURE is related to: STRUCTURE |
nlx_154208 | SCR_009110 | 2026-09-05 06:32:43 | 12 | |||||||||
|
HARDY Resource Report Resource Website 5000+ mentions |
HARDY (RRID:SCR_009107) | HARDY | software application, software resource | Markov chain Monte Carlo program for association in two-dimensional contingency tables, and for testing Hardy-Weinberg equilibrium. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, unix, (dec-unix/..) | is listed by: Genetic Analysis Software | nlx_154205 | SCR_009107 | PANGAEA | 2026-09-05 06:32:44 | 7340 | ||||||||
|
PBAT Resource Report Resource Website 50+ mentions |
PBAT (RRID:SCR_009105) | PBAT | software application, software resource | An interactive software package that provides tools for the design and the data analysis of family-based association studies. (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154203 | SCR_009105 | Power calculation of family-Based Association Tests FBAT | 2026-09-05 06:32:43 | 77 | ||||||||
|
FINESSE Resource Report Resource Website |
FINESSE (RRID:SCR_009100) | FINESSE | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application to incorporate regressive models into the VITESSE likelihood engine. | gene, genetic, genomic, linux, unix, solaris | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154193 | SCR_009100 | VITESSE | 2026-09-05 06:32:43 | 0 | |||||||
|
GDA Resource Report Resource Website 10+ mentions |
GDA (RRID:SCR_009187) | GDA | software application, software resource | Software application designed to accompany the second edition of Bruce Weir''s book Genetic Data Analysis (1996. Sinauer Associates) (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-windows, (3.1/95/nt), macos, (10.2.8/10.3) | is listed by: Genetic Analysis Software | nlx_154326 | SCR_009187 | Genetic Data Analysis | 2026-09-05 06:32:46 | 18 | ||||||||
|
GAS Resource Report Resource Website 10+ mentions |
GAS (RRID:SCR_009184) | GAS | software application, software resource | Software application for statistical analysis of genetic linkage data, sib-pair analysis, association studies (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-dos, unix, (sunos/solaris/aix/osf1/ultrix/sgi-irix), vms | is listed by: Genetic Analysis Software | nlx_154322 | SCR_009184 | Genetic Analysis System | 2026-09-05 06:32:46 | 43 | ||||||||
|
GAIA Resource Report Resource Website 100+ mentions |
GAIA (RRID:SCR_009182) | GAIA | software application, software resource | Web-based application for testing for locus-locus interaction using genetic association. It is based upon the case-control study design and is designed so that non-specialists may routinely apply tests for interaction. GAIA allows simple testing of both additive and additive plus dominance interaction models and includes permutation testing to appropriately correct for multiple testing. The application is useful for both candidate gene based studies and genome-wide association studies. For large scale studies GAIA includes a screening approach which prioritizes loci for further interaction analysis. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic, perl, r, web-based | is listed by: Genetic Analysis Software | DOI:10.1186/1471-2350-7-34 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154320 | http://www.bbu.cf.ac.uk/html/research/biostats.htm | SCR_009182 | Genetic Association Interaction Analysis | 2026-09-05 06:32:46 | 182 | |||||
|
FIRSTORD Resource Report Resource Website 1+ mentions |
FIRSTORD (RRID:SCR_009180) | FIRSTORD | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application for demonstration of method for preliminary ordering of loci based on two-point lod scores. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154317 | SCR_009180 | 2026-09-05 06:32:46 | 2 | ||||||||
|
FISHER Resource Report Resource Website 10000+ mentions |
FISHER (RRID:SCR_009181) | FISHER | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented on February 1st, 2022. Software application for genetic analysis of classical biometric traits like blood pressure or height that are caused by a combination of polygenic inheritance and complex environmental forces. (entry from Genetic Analysis Software) | gene, genetic, genomic, fortran77 | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154318 | SCR_009181 | 2026-09-05 06:32:46 | 40379 | ||||||||
|
BOOSTRAPPER Resource Report Resource Website 1+ mentions |
BOOSTRAPPER (RRID:SCR_009135) | BOOSTRAPPER | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Robust haploblock border reliability estimation tool implemented for LD based haploblock detection method. The most important new features are bootstrapping and overlapping block borders. (entry from Genetic Analysis Software) | gene, genetic, genomic, ms-window, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154250 | SCR_009135 | 2026-09-05 06:32:44 | 2 | ||||||||
|
BOOLD Resource Report Resource Website |
BOOLD (RRID:SCR_009134) | BOOLD | software application, software resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. A set of programs for calculations under different linkage disequilibrium (LD) distribution models (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, fortran 77, perl, unix, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154248 | SCR_009134 | 2026-09-05 06:32:44 | 0 | ||||||||
|
BIOLAD-DB Resource Report Resource Website 1+ mentions |
BIOLAD-DB (RRID:SCR_009131) | BIOLAD-DB | software application, software resource | Software application that is a research bioinformatics system for inputting, validating, organizing, archiving, analyzing, and processing of complex clinical and genetic data. The database schema employs design principles for handling complex clinical information, such as response items in genetic questionnaires. Data access and validation is provided by the BiolAD-DB client application, which features a data validation engine tightly coupled to a graphical user interface. Data integrity is provided by the password protected BiolAD-DB SQL compliant server database. BiolAD-DB tools further provide functionalities for generating customized reports and views. (entry from Genetic Analysis Software) | gene, genetic, genomic, python, ms-windows | is listed by: Genetic Analysis Software | nlx_154244 | SCR_009131 | 2026-09-05 06:32:44 | 1 | |||||||||
|
BIOIDE Resource Report Resource Website |
BIOIDE (RRID:SCR_009130) | BIOIDE | software application, software resource | Collection of data analysis tools and interrelated biomedical information in a single easy-to-use software package that includes a component-based software/data integration platform that can quickly transform fragmented enterprise legacy data and software into an integrated suite of tools and knowledge base to achieve maximal usability, interoperability, scalability, and extensibility. (entry from Genetic Analysis Software), THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154243 | SCR_009130 | BIOmedical Integrated Discovery Environment | 2026-09-05 06:32:44 | 0 | |||||||
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HAPLOWSER Resource Report Resource Website |
HAPLOWSER (RRID:SCR_009095) | HAPLOWSER | software application, software resource | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | nlx_154113 | SCR_009095 | HAPLotype brOWSER | 2026-09-05 06:32:43 | 0 |
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